View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11860_low_10 (Length: 395)

Name: NF11860_low_10
Description: NF11860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11860_low_10
NF11860_low_10
[»] chr1 (7 HSPs)
chr1 (16-381)||(26530350-26530722)
chr1 (20-360)||(36574808-36575163)
chr1 (168-239)||(26529508-26529579)
chr1 (163-241)||(36575525-36575603)
chr1 (168-241)||(26531078-26531151)
chr1 (166-239)||(36573960-36574033)
chr1 (171-233)||(1748096-1748158)
[»] chr2 (8 HSPs)
chr2 (16-365)||(31620961-31621326)
chr2 (16-381)||(36666637-36667010)
chr2 (30-107)||(40893928-40894005)
chr2 (167-238)||(35306100-35306171)
chr2 (168-241)||(31620525-31620598)
chr2 (168-233)||(35298556-35298621)
chr2 (167-233)||(31622101-31622167)
chr2 (168-229)||(40894871-40894932)
[»] chr8 (4 HSPs)
chr8 (168-381)||(12887552-12887786)
chr8 (168-233)||(5005708-5005773)
chr8 (168-233)||(5014820-5014885)
chr8 (168-211)||(17863466-17863509)
[»] chr3 (7 HSPs)
chr3 (268-381)||(11138444-11138555)
chr3 (168-233)||(18912548-18912613)
chr3 (166-211)||(36164594-36164639)
chr3 (168-212)||(9099560-9099604)
chr3 (168-212)||(18939871-18939915)
chr3 (168-212)||(20997633-20997677)
chr3 (168-211)||(36163383-36163426)
[»] chr6 (4 HSPs)
chr6 (164-241)||(9448754-9448831)
chr6 (166-211)||(18193023-18193068)
chr6 (164-211)||(226117-226164)
chr6 (168-211)||(11020406-11020449)
[»] chr7 (5 HSPs)
chr7 (168-241)||(38516620-38516693)
chr7 (168-241)||(45291941-45292014)
chr7 (168-241)||(45296066-45296139)
chr7 (167-211)||(40600710-40600754)
chr7 (169-211)||(40601840-40601882)
[»] chr4 (5 HSPs)
chr4 (168-233)||(41774644-41774709)
chr4 (168-233)||(41780249-41780314)
chr4 (167-211)||(52189185-52189229)
chr4 (165-199)||(30829924-30829958)
chr4 (166-211)||(52190387-52190432)
[»] scaffold0115 (2 HSPs)
scaffold0115 (168-211)||(6098-6141)
scaffold0115 (168-211)||(13838-13881)
[»] chr5 (1 HSPs)
chr5 (169-211)||(16727813-16727855)


Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 381
Target Start/End: Original strand, 26530350 - 26530722
Alignment:
Q  16 agacaacaagtaaacctccaatctgaaattcaatttagaaatgaagatgggtgagtgaatggggggacgatagttccttcagtcagctcaaatccacaaa 115  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26530350 agacaacaagcaaacctccaatccgaaattcaatttagaaatgaagatgggtgagtgaatggggggacgatagttccttcagtcggctcaaatccacaaa 26530449  T
Q  116 accctcattttcaaacccccaccaagctccatttttggtaccagaaacaaaagagtaaaccttcatttgggtccctgaaagtgtacctctctatcaaata 215  Q
    ||||||||||| ||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  26530450 accctcattttgaaacccccaccaagctctaattttggtactagaaacaaaagagtaaaccttcatttgggtccctgaaagtgtacctcgctatcaaaca 26530549  T
Q  216 tgtccctggatcaagaaatcgaaccatcatcatctttctcaaaactaaacat---caacaacaccattatcttctttctg-aaaaccaacaacatcaact 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||| || ||||||||||||| |||||    
T  26530550 tgtccctggatcaagaaatcgaaccatcatcatctttctcaaaactaaacatcaacaacaacaccattatcttctttatgaaaaaccaacaacaccaact 26530649  T
Q  312 ctcatacgtaggg---ttcattttcttcgtcgtgtatgtgattgtggtgtttgtgttgttggtgcttattgat 381  Q
    |||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26530650 ctcatacgtagggttcttcattttcttcgtcgtgtatgtgattgtggtgtttgtgttgttggtgtttattgat 26530722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 360
Target Start/End: Original strand, 36574808 - 36575163
Alignment:
Q  20 aacaagtaaacctccaatctgaaattcaatttagaaatgaagatgggtgagtgaatggggggacgatagttccttcagtcagctcaaatccacaaaaccc 119  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36574808 aacaagtaaacctctaatccgaaattcaatttagaaatgaagatgggtgagtgaatggggggacggtagttccttcagtcagctcaaatccacaaaaccc 36574907  T
Q  120 tcattttcaaacccccaccaagctccatttttggtaccagaaacaaaagagtaaaccttcatttgggtccctgaaagtgtacctctctatcaaatatgtc 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||    
T  36574908 tcattttcaaacccccaccaagctccatttttggtaccagaaacaaaagagtaaactttcatttgggtccctgaaagtgtacctcgctatcaaacatgtc 36575007  T
Q  220 cctggatcaagaaatcgaaccatcatcatctttctcaaaactaaacat------------caacaacaccattatcttctttctgaaaaccaacaacatc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||            |||||||| |||||||||||||||||||||||||||||||    
T  36575008 cctggatcaagaaatcgaaccatcatcatctttctcaaaactaaacatcaacaacatcaacaacaacatcattatcttctttctgaaaaccaacaacatc 36575107  T
Q  308 aactctcatacgtaggg---ttcattttcttcgtcgtgtatgtgattgtggtgttt 360  Q
    |||||||||| ||||||   ||||||||||||||||||||||||||||||||||||    
T  36575108 aactctcatatgtagggttcttcattttcttcgtcgtgtatgtgattgtggtgttt 36575163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 26529508 - 26529579
Alignment:
Q  168 gagtaaaccttcatttgggtccctgaaagtgtacctctctatcaaatatgtccctggatcaagaaatcgaac 239  Q
    ||||||||| ||||||||||||||||||||||||||| |||||| | | ||||||| ||||||||| |||||    
T  26529508 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacacgtccctgaatcaagaaaacgaac 26529579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 36575603 - 36575525
Alignment:
Q  163 caaaagagtaaaccttcatttgggtccctgaaagtgtacctctctatcaaatatgtccctggatcaagaaatcgaacca 241  Q
    |||||||||||||| ||||||| ||||||||||||||||||| |||||| | | |||| |  ||||||||| |||||||    
T  36575603 caaaagagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagacacgtccttaaatcaagaaaacgaacca 36575525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 26531151 - 26531078
Alignment:
Q  168 gagtaaaccttcatttgggtccctgaaagtgtacctctctatcaaatatgtccctggatcaagaaatcgaacca 241  Q
    ||||||||| |||||| |||||||||||||||||||| |||| | | | ||||||| ||||||||| |||||||    
T  26531151 gagtaaaccctcattttggtccctgaaagtgtacctcgctattagacacgtccctgaatcaagaaaacgaacca 26531078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 36573960 - 36574033
Alignment:
Q  166 aagagtaaaccttcatttgggtccctgaaagtgtacctctctatcaaatatgtccctggatcaagaaatcgaac 239  Q
    ||||||||||  |||||| |||||||||||||||||||| |||||||  | ||||||| ||||||||| |||||    
T  36573960 aagagtaaacactcatttaggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaaacgaac 36574033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 1748158 - 1748096
Alignment:
Q  171 taaaccttcatttgggtccctgaaagtgtacctctctatcaaatatgtccctggatcaagaaa 233  Q
    ||||||||| |||| ||||||||||||||||| | |||| | | |||||||||||||||||||    
T  1748158 taaaccttcgtttgagtccctgaaagtgtaccacgctattagacatgtccctggatcaagaaa 1748096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 365
Target Start/End: Complemental strand, 31621326 - 31620961
Alignment:
Q  16 agacaacaagtaaacctccaatctgaaattcaatttagaaatgaagatgggtgagtgaatggggggacgatagttccttcagtcagctcaaatccacaaa 115  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  31621326 agacaacaagtaaacctccaatccgaaattcaatttagaaatgaagatgggtgagtgaatggggggacggtagttccttcagtcagctcaaatccacaaa 31621227  T
Q  116 accctcattttcaaaccccc-accaagctccatttttggtaccagaaacaaaagagtaaaccttcatttgggtccctgaaagtgtacctctctatcaaat 214  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||     
T  31621226 accctcattttcaaaccccccaccaagctccatttttggtaccagaaacaaaagagtaaaccttcatttgggtccctaaaagtgtacctcgctatcaaac 31621127  T
Q  215 atgtccctggatcaagaaatcgaaccatcatcatctttctcaaaactaaacatcaac------------aacaccattatcttctttctgaaaaccaaca 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||    
T  31621126 atgtccctggatcaagaaatcgaaccatcatcatctttctcaaaactaaacatcaacaacatcaacaacaacaccattatcttctttctgaaaaccaaca 31621027  T
Q  303 acatcaactctcatacgtaggg---ttcattttcttcgtcgtgtatgtgattgtggtgtttgtgtt 365  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||  |||||||    
T  31621026 acatcaactctcatacgtagggttcttcattttcttcgtcgtgtatgtgattgtggttattgtgtt 31620961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 381
Target Start/End: Complemental strand, 36667010 - 36666637
Alignment:
Q  16 agacaacaagtaaacctccaatctgaaattcaatttagaaatgaagatgggtgagtgaatgggggg-acgatagttccttcagtcagctcaaatccacaa 114  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||| ||||||||| ||    
T  36667010 agacaacaagtaaacctccaatccgaaattcaatttagaaatgaagatgagtgagtgaatgggggggacggtagttccttcagtcagttcaaatccataa 36666911  T
Q  115 aaccctcatttt-caaacccccaccaagctccatttttggtaccagaaacaaaagagtaaaccttcatttgggtccctgaaagtgtacctctctatcaaa 213  Q
    |||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| ||| |||||||||||| |||||||||||| ||||||||    
T  36666910 aaccctcatttttcaaacccccaccaagctccaattgtggtaccagaaacaaaagagtaaagctttatttgggtccctaaaagtgtacctcgctatcaaa 36666811  T
Q  214 tatgtccctggatcaagaaatcgaaccatcatcatctttctcaaaactaaacatcaa---caacaccattatcttctttctgaaaaccaacaacatcaac 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||| |||||    
T  36666810 tatgtccctggatcaagaaatcgaaccatcatcatctttctcaaaactaaacatcaacagcaacaccattatcttctttctgaaaaccaacaacgtcaac 36666711  T
Q  311 tctcatacgtaggg---ttcattttcttcgtcgtgtatgtgattgtggtgtttgtgttgttggtgcttattgat 381  Q
    ||||||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36666710 tctcatatgtagggttcttcattttcttcgtcgtgtatgtgattgtggtgtttgtgttgttggtgtttattgat 36666637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 40894005 - 40893928
Alignment:
Q  30 cctccaatctgaaattcaatttagaaatgaagatgggtgagtgaatggggggacgatagttccttcagtcagctcaaa 107  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||| |||  ||||||||||||||||||||||    
T  40894005 cctccaatatgaaattcaatttaaaaatgaagatgggtgagtgaatggggtgacagtagttccttcagtcagctcaaa 40893928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 35306171 - 35306100
Alignment:
Q  167 agagtaaaccttcatttgggtccctgaaagtgtacctctctatcaaatatgtccctggatcaagaaatcgaa 238  Q
    |||||||||| |||||| |||||||||||||||||||| |||||||| ||||||||| ||||||||| ||||    
T  35306171 agagtaaaccctcatttaggtccctgaaagtgtacctcgctatcaaacatgtccctgaatcaagaaaacgaa 35306100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 31620525 - 31620598
Alignment:
Q  168 gagtaaaccttcatttgggtccctgaaagtgtacctctctatcaaatatgtccctggatcaagaaatcgaacca 241  Q
    ||||||||| ||||||| ||||||||||||||||||| |||||| ||| |||| || ||||||||| |||||||    
T  31620525 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatcagatacgtccttgaatcaagaaaacgaacca 31620598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 35298556 - 35298621
Alignment:
Q  168 gagtaaaccttcatttgggtccctgaaagtgtacctctctatcaaatatgtccctggatcaagaaa 233  Q
    ||||||||| |||||||||| |||||||||||||||| |||||||  | ||||||| |||||||||    
T  35298556 gagtaaaccctcatttgggttcctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaa 35298621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 31622167 - 31622101
Alignment:
Q  167 agagtaaaccttcatttgggtccctgaaagtgtacctctctatcaaatatgtccctggatcaagaaa 233  Q
    |||||||||| | |||||||||||||||||||||||||  ||||||  | ||||||| |||||||||    
T  31622167 agagtaaacccttatttgggtccctgaaagtgtacctcgttatcaaccacgtccctgaatcaagaaa 31622101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 40894932 - 40894871
Alignment:
Q  168 gagtaaaccttcatttgggtccctgaaagtgtacctctctatcaaatatgtccctggatcaa 229  Q
    ||||||||| |||||||| ||||| |||||||||||| ||||||  || |||||||||||||    
T  40894932 gagtaaaccctcatttggatccctaaaagtgtacctcgctatcaggtacgtccctggatcaa 40894871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 168 - 381
Target Start/End: Complemental strand, 12887786 - 12887552
Alignment:
Q  168 gagtaaaccttcatttgggtccctgaaagtgtacctctctatcaaatatgtccctggatcaagaaatcgaaccatcatcatctttctcaaaactaaa--- 264  Q
    ||||||||| ||||||||||||||||||||||||||| | |||| | || ||||||||||||||||||||||||||||| ||||||||||||| |||       
T  12887786 gagtaaaccctcatttgggtccctgaaagtgtacctcgcgatcagacatatccctggatcaagaaatcgaaccatcatcttctttctcaaaaccaaacat 12887687  T
Q  265 ---------catcaacaacaccattatcttctttctgaaaaccaaca----acatcaa--ctctcatacgtaggg---ttcattttcttcgtcgtgtatg 346  Q
             |||||||| |||||| || |||||||||||||| ||||    |||||||  |||||||||||||||   ||||||||||| || |||||||    
T  12887686 cagcaacatcatcaacaccaccatcatattctttctgaaaactaacaacatacatcaactctctcatacgtagggttcttcattttctttgttgtgtatg 12887587  T
Q  347 tgattgtggtgtttgtgttgttggtgcttattgat 381  Q
    ||||||| ||||||||| | |||||| ||||||||    
T  12887586 tgattgttgtgtttgtgctattggtgtttattgat 12887552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 5005708 - 5005773
Alignment:
Q  168 gagtaaaccttcatttgggtccctgaaagtgtacctctctatcaaatatgtccctggatcaagaaa 233  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||  | ||||||| |||||||||    
T  5005708 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaa 5005773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 5014885 - 5014820
Alignment:
Q  168 gagtaaaccttcatttgggtccctgaaagtgtacctctctatcaaatatgtccctggatcaagaaa 233  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||  | |||| || |||||||||    
T  5014885 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaaccacgtccttgaatcaagaaa 5014820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 17863466 - 17863509
Alignment:
Q  168 gagtaaaccttcatttgggtccctgaaagtgtacctctctatca 211  Q
    ||||||||| ||||||||||||||||||||| ||||| ||||||    
T  17863466 gagtaaaccctcatttgggtccctgaaagtgcacctcgctatca 17863509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 268 - 381
Target Start/End: Complemental strand, 11138555 - 11138444
Alignment:
Q  268 caacaacaccattatcttctttctgaaaaccaacaacatcaactctcatacgtagggttcat--tttcttcgtcgtgtatgtgattgtggtgtttgtgtt 365  Q
    |||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||  |  ||||||||| ||||||||||||   |||||||||||    
T  11138555 caacaacaccatcatcttctttctcaaa-ccaacaacatcaactctcatacgtagggttattcatttcttcgttgtgtatgtgatt---gtgtttgtgtt 11138460  T
Q  366 gttggtgcttattgat 381  Q
    ||||||| ||||||||    
T  11138459 gttggtgtttattgat 11138444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 18912548 - 18912613
Alignment:
Q  168 gagtaaaccttcatttgggtccctgaaagtgtacctctctatcaaatatgtccctggatcaagaaa 233  Q
    ||||||||| ||||||||||||||||||||||||||| |||| ||  ||||||||| |||||||||    
T  18912548 gagtaaaccctcatttgggtccctgaaagtgtacctcactattaaccatgtccctgaatcaagaaa 18912613  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 36164639 - 36164594
Alignment:
Q  166 aagagtaaaccttcatttgggtccctgaaagtgtacctctctatca 211  Q
    ||||||||||| |||||||||||||||||||||| |||| ||||||    
T  36164639 aagagtaaaccctcatttgggtccctgaaagtgtccctcgctatca 36164594  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 9099560 - 9099604
Alignment:
Q  168 gagtaaaccttcatttgggtccctgaaagtgtacctctctatcaa 212  Q
    ||||||||| |||||||||||||| |||||||||||| |||||||    
T  9099560 gagtaaaccctcatttgggtcccttaaagtgtacctcgctatcaa 9099604  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 18939915 - 18939871
Alignment:
Q  168 gagtaaaccttcatttgggtccctgaaagtgtacctctctatcaa 212  Q
    ||||||||| |||||||||||||||||||||||| || |||||||    
T  18939915 gagtaaaccctcatttgggtccctgaaagtgtacttcgctatcaa 18939871  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 20997633 - 20997677
Alignment:
Q  168 gagtaaaccttcatttgggtccctgaaagtgtacctctctatcaa 212  Q
    ||||||||| |||||||||||||||||| |||||||| |||||||    
T  20997633 gagtaaaccctcatttgggtccctgaaaatgtacctcgctatcaa 20997677  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 211
Target Start/End: Original strand, 36163383 - 36163426
Alignment:
Q  168 gagtaaaccttcatttgggtccctgaaagtgtacctctctatca 211  Q
    |||||||||||||||||| ||||||||||||| |||| ||||||    
T  36163383 gagtaaaccttcatttggatccctgaaagtgtccctcgctatca 36163426  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 9448831 - 9448754
Alignment:
Q  164 aaaagagtaaaccttcatttgggtccctgaaagtgtacctctctatcaaatatgtccctggatcaagaaatcgaacca 241  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||| | |  ||||||||||||| ||||||||||    
T  9448831 aaaagagtaaaccctcatttgggtccctgaaagtgtacctcgctatcagacacatccctggatcaaggaatcgaacca 9448754  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 18193068 - 18193023
Alignment:
Q  166 aagagtaaaccttcatttgggtccctgaaagtgtacctctctatca 211  Q
    ||||||||||| |||||||||||||||||||||| |||| ||||||    
T  18193068 aagagtaaaccctcatttgggtccctgaaagtgtccctcgctatca 18193023  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 226117 - 226164
Alignment:
Q  164 aaaagagtaaaccttcatttgggtccctgaaagtgtacctctctatca 211  Q
    ||||||||||||| |||||||||||| ||||||||| |||| ||||||    
T  226117 aaaagagtaaaccctcatttgggtccttgaaagtgtgcctcgctatca 226164  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 11020449 - 11020406
Alignment:
Q  168 gagtaaaccttcatttgggtccctgaaagtgtacctctctatca 211  Q
    ||||||||| |||||||||||||||||||||| |||| ||||||    
T  11020449 gagtaaaccctcatttgggtccctgaaagtgtccctcgctatca 11020406  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 38516620 - 38516693
Alignment:
Q  168 gagtaaaccttcatttgggtccctgaaagtgtacctctctatcaaatatgtccctggatcaagaaatcgaacca 241  Q
    ||||||||| |||||||||||||||||||||||| || |||||| | |  ||||||||||||| |||| |||||    
T  38516620 gagtaaaccctcatttgggtccctgaaagtgtacatcgctatcagacacatccctggatcaaggaatccaacca 38516693  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 45292014 - 45291941
Alignment:
Q  168 gagtaaaccttcatttgggtccctgaaagtgtacctctctatcaaatatgtccctggatcaagaaatcgaacca 241  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||   |  |||||| |||||| ||||||||||    
T  45292014 gagtaaaccctcatttgggtccctgaaagtgtacctcgctatcaggcacatccctgaatcaaggaatcgaacca 45291941  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 45296139 - 45296066
Alignment:
Q  168 gagtaaaccttcatttgggtccctgaaagtgtacctctctatcaaatatgtccctggatcaagaaatcgaacca 241  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||   |  ||| ||||||||| ||||||||||    
T  45296139 gagtaaaccctcatttgggtccctaaaagtgtacctcgctatcaggcacatccatggatcaaggaatcgaacca 45296066  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 40600710 - 40600754
Alignment:
Q  167 agagtaaaccttcatttgggtccctgaaagtgtacctctctatca 211  Q
    |||||||||| |||||||||||||||||| ||| |||||||||||    
T  40600710 agagtaaaccctcatttgggtccctgaaaatgtgcctctctatca 40600754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 40601882 - 40601840
Alignment:
Q  169 agtaaaccttcatttgggtccctgaaagtgtacctctctatca 211  Q
    |||||||| |||||||||||||||||||||| |||| ||||||    
T  40601882 agtaaaccctcatttgggtccctgaaagtgtgcctcgctatca 40601840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 233
Target Start/End: Original strand, 41774644 - 41774709
Alignment:
Q  168 gagtaaaccttcatttgggtccctgaaagtgtacctctctatcaaatatgtccctggatcaagaaa 233  Q
    ||||||||  ||||||||||||||||||||||||||| |||||||  | ||||||| |||||||||    
T  41774644 gagtaaactctcatttgggtccctgaaagtgtacctcgctatcaaccacgtccctgaatcaagaaa 41774709  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 41780314 - 41780249
Alignment:
Q  168 gagtaaaccttcatttgggtccctgaaagtgtacctctctatcaaatatgtccctggatcaagaaa 233  Q
    ||||||||| ||||||||||| ||||||||||||||| |||||||  | || |||| |||||||||    
T  41780314 gagtaaaccctcatttgggtctctgaaagtgtacctcgctatcaaccacgttcctgaatcaagaaa 41780249  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 52189185 - 52189229
Alignment:
Q  167 agagtaaaccttcatttgggtccctgaaagtgtacctctctatca 211  Q
    |||||||||| ||||||||||||||||||||| ||||| ||||||    
T  52189185 agagtaaaccctcatttgggtccctgaaagtgcacctcgctatca 52189229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 199
Target Start/End: Original strand, 30829924 - 30829958
Alignment:
Q  165 aaagagtaaaccttcatttgggtccctgaaagtgt 199  Q
    |||||||||||| ||||||||||||||||||||||    
T  30829924 aaagagtaaaccctcatttgggtccctgaaagtgt 30829958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 52190432 - 52190387
Alignment:
Q  166 aagagtaaaccttcatttgggtccctgaaagtgtacctctctatca 211  Q
    ||||||||||| ||||||||||||||||||||| | ||| ||||||    
T  52190432 aagagtaaaccctcatttgggtccctgaaagtgcatctcgctatca 52190387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 6141 - 6098
Alignment:
Q  168 gagtaaaccttcatttgggtccctgaaagtgtacctctctatca 211  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||||    
T  6141 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatca 6098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 13881 - 13838
Alignment:
Q  168 gagtaaaccttcatttgggtccctgaaagtgtacctctctatca 211  Q
    ||||||||| ||||||| ||||||||||||||||||| ||||||    
T  13881 gagtaaaccctcatttgagtccctgaaagtgtacctcgctatca 13838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 16727813 - 16727855
Alignment:
Q  169 agtaaaccttcatttgggtccctgaaagtgtacctctctatca 211  Q
    |||||||| ||||||||||| ||||||||||||||| ||||||    
T  16727813 agtaaaccctcatttgggtcgctgaaagtgtacctcgctatca 16727855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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