View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11860_low_15 (Length: 315)

Name: NF11860_low_15
Description: NF11860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11860_low_15
NF11860_low_15
[»] chr1 (1 HSPs)
chr1 (7-296)||(35095714-35096003)


Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 7 - 296
Target Start/End: Complemental strand, 35096003 - 35095714
Alignment:
Q  7 gcaattgagatagcttacaacaaaggctggactaatctatggttagaaactgattcgacattggttctgttaagtcttcgtcctttgttccataaaacat 106  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35096003 gcaattgagatagcttacaataaaggctggactaatctatggttagaaactgattcgacattggttctgttaagccttcgtcctttgttccataaaacat 35095904  T
Q  107 aaggaatagatgggaaaattgcattgatttaacaaaacaaatgaacttcatagtctctcgtatatttagagaaggaaattgtggtgccgatagtttagca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35095903 aaggaatagatgggaaaattgcattgatttaacaaaacaaatgaacttcatagtctctcgtatatttagagaaggaaattgtggtgccgatagtttagca 35095804  T
Q  207 tatattgggttgtctatcaactcttttctctcgatgaatgacattccatctcatgccagagctgacttctctaggaataggctttgttga 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35095803 tatattgggttgtctatcaactcttttctctcgatgaatgacattccatctcatgccagagctgacttctctaggaataggctttgttga 35095714  T

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