View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11860_low_17 (Length: 308)
Name: NF11860_low_17
Description: NF11860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11860_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 3 - 283
Target Start/End: Original strand, 42434855 - 42435135
Alignment:
| Q |
3 |
agtagataggatgaaagagagaagaaaacaatggatgtgtgaatgatcgacatgataaatgatgcagagaaataagagaacaatggaagagagaatgatg |
102 |
Q |
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| T |
42434855 |
agtagataggatgaaagagagaagaaaacaatggaggtgtcaaggattgatatgataaatgatgcagagaaataagcgaacaatggaagagagaatgatg |
42434954 |
T |
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| Q |
103 |
aagaaagatgtggtgcggcaacaatgtatttatttagggttacagaaacaacttaggctatttaggcctactgtatgggcttaggttaaccgtagtccnn |
202 |
Q |
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| T |
42434955 |
aagaaagatgtggtgcggcagcaatgtatttatttagggttacagaaataacttaggctatttaggcctactgtatgggcttaggttaaccgtagtccaa |
42435054 |
T |
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| Q |
203 |
nnnnnngtaagttgtatagtggaaattttgcaatatacccctacatatgtactttcacccgtacaattaaaaatacaaatt |
283 |
Q |
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| T |
42435055 |
aaaaaagtaagttgtatagtggaaattttgtgatatacccctacatatgtactttcacccgcacaattaaaaataaaaatt |
42435135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 6 - 247
Target Start/End: Complemental strand, 28294003 - 28293759
Alignment:
| Q |
6 |
agataggatg-aaagagagaagaaaacaatggatgtgtgaatgatcgacatgataaatgatgcagaga--aataagagaacaatggaagagagaatgatg |
102 |
Q |
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| T |
28294003 |
agataggatgcaaagaaagaagaaaacaatggaggtgtgaaggatcgacataataaatgatgcagagagaaagaagagaacaatggaagagagattgatg |
28293904 |
T |
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| Q |
103 |
aagaaagatgtggtgcggcaacaatgtatttatttagggttacagaaacaacttaggctatttaggcctactgtatgggcttaggttaaccgtagtccnn |
202 |
Q |
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| T |
28293903 |
aagaaagatgtggtgcggcaggaatgtatttatttagggttacagaaacaacataggctatttgggcccactgtatgggcttagattaaccgaagttaaa |
28293804 |
T |
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| Q |
203 |
nnnnnngtaagttgtatagtggaaattttgcaatatacccctaca |
247 |
Q |
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| T |
28293803 |
aaaaaagtatgttgtatagttgaaattttacgatatacccctaca |
28293759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 8390218 - 8390342
Alignment:
| Q |
68 |
agagaaataagagaacaatggaagagagaatgatgaagaa---agatgtggtgcggcaacaatgtatttatttagggttacagaaacaacttaggctatt |
164 |
Q |
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| T |
8390218 |
agagaaagaagagaacaatggaatggagaaagatgaagaacgaagatgtgttgcggcggcatcatatttatttagggttaccgaaataacttaagctatt |
8390317 |
T |
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| Q |
165 |
taggcctactgtatgggcttaggtt |
189 |
Q |
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| T |
8390318 |
tgggcctaatgtatggacttaggtt |
8390342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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