View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11860_low_22 (Length: 228)
Name: NF11860_low_22
Description: NF11860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11860_low_22 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 42435535 - 42435316
Alignment:
| Q |
1 |
cacactcttactcaaaatcttaaggcaatagatttatggatcctgttatttcacacttgcaagttgcaaatcaacattttccactagtgttattagccc- |
99 |
Q |
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| T |
42435535 |
cacactctgattcaaaaccttaaggtaatagatt-atggatcctcttacttcacacttgcaa-------atcaacattttccactagtgttattggcccc |
42435444 |
T |
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| Q |
100 |
tgcttacaaatgttaagatttcaaggtgttttttgaaatctgtaacaaaatcctgaaatgttttatacaagacttccagaaatataaatacgagtatttc |
199 |
Q |
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| T |
42435443 |
tacttacaaatgttaagatttcaaggtgttttttgaaatttgtaa-aaaatcctgaaatgttttatacaagacttccagaaatataaatacgagtatttc |
42435345 |
T |
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| Q |
200 |
aaaaatttattcaaatcaagaaatatttt |
228 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
42435344 |
aaaaatttattcaaatcaagaaatatttt |
42435316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 77 - 228
Target Start/End: Original strand, 28293411 - 28293563
Alignment:
| Q |
77 |
ttttccactagtgttattagccc-tgcttacaaatgttaagatttcaaggtgttttttgaaatctgtaacaaaatcctgaaatgttttatacaagacttc |
175 |
Q |
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|||||||||||||||||| |||| ||||||||||||||| |||||| |||||||||||||| ||||| |||||||||||| ||||||||| | ||| |
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| T |
28293411 |
ttttccactagtgttattggcccctgcttacaaatgttaggatttcgttgtgttttttgaaatttgtaaaaaaatcctgaaacgttttatacgggtcttt |
28293510 |
T |
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| Q |
176 |
cagaaatataaatacgagtatttcaaaaatttattcaaatcaagaaatatttt |
228 |
Q |
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| T |
28293511 |
cataaatataaatacgagtatttaaaaaatttattcaaatcgagaaacatttt |
28293563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 5543048 - 5543091
Alignment:
| Q |
1 |
cacactcttactcaaaatcttaaggcaatagatttatggatcct |
44 |
Q |
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| T |
5543048 |
cacactcttacccaaaatcttaaggcaataggtttatggatcct |
5543091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 33731753 - 33731713
Alignment:
| Q |
4 |
actcttactcaaaatcttaaggcaatagatttatggatcct |
44 |
Q |
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| T |
33731753 |
actcttacccaaaaccttaaggcaataggtttatggatcct |
33731713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 1950235 - 1950278
Alignment:
| Q |
1 |
cacactcttactcaaaatcttaaggcaatagatttatggatcct |
44 |
Q |
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| T |
1950235 |
cacactcttactcaaaaccttaaggcattagatttatggctcct |
1950278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 14318975 - 14318937
Alignment:
| Q |
1 |
cacactcttactcaaaatcttaaggcaatagatttatgg |
39 |
Q |
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| T |
14318975 |
cacactcttacccaaaaccttaaggcaatagatttatgg |
14318937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 41759591 - 41759550
Alignment:
| Q |
1 |
cacactcttactcaaaatcttaaggcaatagatttatggatc |
42 |
Q |
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| T |
41759591 |
cacactcttacccaaaaccttaaggcaatggatttatggatc |
41759550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45433349 - 45433312
Alignment:
| Q |
1 |
cacactcttactcaaaatcttaaggcaatagatttatg |
38 |
Q |
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||||||||||| ||||||||||||||||||| |||||| |
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| T |
45433349 |
cacactcttacccaaaatcttaaggcaataggtttatg |
45433312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 5274883 - 5274855
Alignment:
| Q |
1 |
cacactcttactcaaaatcttaaggcaat |
29 |
Q |
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| T |
5274883 |
cacactcttactcaaaatcttaaggcaat |
5274855 |
T |
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