View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11860_low_3 (Length: 695)
Name: NF11860_low_3
Description: NF11860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11860_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 16 - 611
Target Start/End: Complemental strand, 54986041 - 54985440
Alignment:
| Q |
16 |
caaaggccacattggatatcatagcccccataaaccctgaaacgtagataagatcagtcaaacaaaatacagattcagcatccaatatcacctcaatcta |
115 |
Q |
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| T |
54986041 |
caaaggccacattggatatcatagcccccataaaccctgaaacatagataagatcagtcaaacaaaatacagattcagcatcctatatcaactcaatcta |
54985942 |
T |
|
| Q |
116 |
ctatgatagaagaacacaatcagcatctgaaaatcaaccatgtaaat-----aagtgaatgtagtcttaccaatcatattgaaattaagttctgtgacag |
210 |
Q |
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| T |
54985941 |
ctatgatagaagaacacaatcagcatctgaaaatcaaccatgtaaattaaataagtgaatgtagtcttaccaatcatattgaaattaagttctgtgacag |
54985842 |
T |
|
| Q |
211 |
cagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcaccaagcaagaatcttgatacaagaacactgaaagc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54985841 |
cagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcaccaagcaagaattttgatacaagaacactgaaagc |
54985742 |
T |
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| Q |
311 |
aggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagccgcaacatgcccaattgtatgtgccacagcaacctgc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54985741 |
aggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagccgcaacatgcccaattgtatgtgccacagcaacctgc |
54985642 |
T |
|
| Q |
411 |
agtttaaattct-cattcagtactaaatcaatatttccgtatttcaaaagcaataatcttacttgatgcaaaagtctcatattctagttttagtatagtc |
509 |
Q |
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| T |
54985641 |
agtttaaattctccattcagtactaaatcaatatttccgtatttcaaaagcaagaatcttacttgatgcaaaagtctcatattctagctttaatatagtc |
54985542 |
T |
|
| Q |
510 |
tatgtttggctacaatttcggagaggaaaaaattaattctagaactaacacagtgtggcacatttagaagataaatgtgtcccttaagcatgtggtcatg |
609 |
Q |
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| T |
54985541 |
tatgtttggctacaatttcggagaggaaaaaattaattctagaactaacatagtgtggcacatttagaagataaatgtgtcccttaagcatgtggtcatg |
54985442 |
T |
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| Q |
610 |
gt |
611 |
Q |
| |
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|| |
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| T |
54985441 |
gt |
54985440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 630 - 695
Target Start/End: Complemental strand, 54985444 - 54985379
Alignment:
| Q |
630 |
atggtagagcactttttaaaagaggtaaggtaccgtatatctccgtagcttgaaggattagactct |
695 |
Q |
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| T |
54985444 |
atggtagagcactttttaaaagaggtaagctcccgtagatctccgtatcttgaaggattagtctct |
54985379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 8e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 178 - 408
Target Start/End: Complemental strand, 7883437 - 7883207
Alignment:
| Q |
178 |
taccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcacc |
277 |
Q |
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| T |
7883437 |
taccaatcatattgaaattgagttctgttacagcagctagtgcacaaccaccaattattggcaacaatgagaggtaaactggcatagggaatgcttctcc |
7883338 |
T |
|
| Q |
278 |
aagcaagaatcttgatacaagaacactgaaagcaggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagccgca |
377 |
Q |
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| T |
7883337 |
aagcaagaatcttgatactagcacactgaaagctggttctccactcttgatgatgtgagtgaatgaaactgctactttggacatactcacagttgcagca |
7883238 |
T |
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| Q |
378 |
acatgcccaattgtatgtgccacagcaacct |
408 |
Q |
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| T |
7883237 |
acatgcccaattgtgtgtgccacagctacct |
7883207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 177 - 414
Target Start/End: Complemental strand, 18396224 - 18395987
Alignment:
| Q |
177 |
ttaccaatcatattgaaattaagttctgtgacagcagcaagtgcacaacctccaataattggtagtagtgaaaggtaaacttgtaaagggaacgcttcac |
276 |
Q |
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|||||||||||||||||||| ||||| || ||||||||||||||||| || ||||| ||||| | || || || || ||| | | ||||| | ||||| |
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| T |
18396224 |
ttaccaatcatattgaaattgagttcagtcacagcagcaagtgcacatccaccaatgattggaattaaagacagatagactggcacggggaaggtttcac |
18396125 |
T |
|
| Q |
277 |
caagcaagaatcttgatacaagaacactgaaagcaggttctccacttttgattatgtgtgtaaatgaaactgcaactttggacatactcacagtagccgc |
376 |
Q |
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| | | ||||| || || |||||||| |||||||| || ||||| ||||| || |||||||| || || || |||||||||||||| || |||||||| |
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| T |
18396124 |
ccaagataaatctcgaaaccagaacactaaaagcaggctcgccactcttgatgatatgtgtaaacgacacagccactttggacatactaaccgtagccgc |
18396025 |
T |
|
| Q |
377 |
aacatgcccaattgtatgtgccacagcaacctgcagtt |
414 |
Q |
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||||| |||||||| ||||| ||||||||||| |||| |
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| T |
18396024 |
gacatgtccaattgtgtgtgcaacagcaacctgaagtt |
18395987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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