View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11860_low_4 (Length: 690)
Name: NF11860_low_4
Description: NF11860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11860_low_4 |
 | |
|
| [»] scaffold0394 (1 HSPs) |
| | |
|
| [»] scaffold0254 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 374 - 663
Target Start/End: Complemental strand, 31617727 - 31617438
Alignment:
| Q |
374 |
taaactttcacttatgatgattttcccaacttctaatttatttcacacagaaggaatcaattgtaaatgtatcatttgatttaccgctacccgaactgaa |
473 |
Q |
| |
|
||||||| ||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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|
| T |
31617727 |
taaacttgcacttatgatgcttttcccagcttctaatttagtttacacagaaggaatcaattgtaaatgtatcatttgatttaacgctacccgaactcaa |
31617628 |
T |
|
| Q |
474 |
agctaatctgcataaaaactgtgaaactcagatttttgaaactgtggcagcatgcgatgccaatctattcctagtagtggtgtttatgtaacaccataaa |
573 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||| ||||||||||| ||||||| |||||| |
|
|
| T |
31617627 |
agataatctgcataaaaactgtgaaactcagatttttgaaacagtggcagcatgcgatgcaaacctgttcctgatagtggtgtttctgtaacatcataaa |
31617528 |
T |
|
| Q |
574 |
cataaaacaccaaatcatgaatcaaaaatatttaaactcacggtctataaacaccaaacacaaatctaaaaataaatagaggtgaacctg |
663 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||| |
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|
| T |
31617527 |
cataaaacaccaaatcatgtatcgaaaatatttaaactcacagtctataaacaccaaaaacaaatctaaaaataaatagaagtgaacctg |
31617438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 40 - 294
Target Start/End: Complemental strand, 31618055 - 31617801
Alignment:
| Q |
40 |
catatcctccaaagcccgtgttatattcacccgaaaggtcacaactacaagtgtcagatatgtcgtcatctgatttgtacgagacaaattcagttacagt |
139 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||| || |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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|
| T |
31618055 |
catatcctccaaagcctgtcttatattcacccgaaaggccagaactacaagtgtcagatatgtcttcatccgatttgtacgagacaaattcagttacagt |
31617956 |
T |
|
| Q |
140 |
atcaaaatagttgttatttctataaattaaatggactaattaatttgtgtaactatttctggcataccaatatggtattagtttgttgaacttcaaaatc |
239 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
31617955 |
atcaaaataattgttatttctataaattcaatggactaattaatttgtgtaactatttctggcatacaaatatggtattagtttgttgaacttcaaaatc |
31617856 |
T |
|
| Q |
240 |
cattttgcacaaattatagtgatcgtagcggcaaatttactggcaccaaactggc |
294 |
Q |
| |
|
|||||||||| ||||||||| ||||||| | | ||||||||| ||| |||||||| |
|
|
| T |
31617855 |
cattttgcacgaattatagttatcgtagtgactaatttactgtcactaaactggc |
31617801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 34 - 267
Target Start/End: Complemental strand, 31604457 - 31604224
Alignment:
| Q |
34 |
caataccatatcctccaaagcccgtgttatattcacccgaaaggtcacaactacaagtgtcagatatgtcgtcatctgatttgtacgagacaaattcagt |
133 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||| |||||| ||||| ||||||||||||| ||||| ||||||||| |||| ||||||| ||| | |
|
|
| T |
31604457 |
caatatcatatcctccaaagcccgtcttatattcacctgaaaggccacaattacaagtgtcagacatgtcttcatctgatctgtatgagacaatatcaat |
31604358 |
T |
|
| Q |
134 |
tacagtatcaaaatagttgttatttctataaattaaatggactaattaatttgtgtaactatttctggcataccaatatggtattagtttgttgaacttc |
233 |
Q |
| |
|
|||| ||||||||| ||||| |||| |||||| ||||||||||||||| ||||||||||||||||||||||| ||||||| |||| |||||||||||| |
|
|
| T |
31604357 |
aacagaatcaaaataattgttctttcaataaatcaaatggactaattaacttgtgtaactatttctggcatacaaatatggaattaatttgttgaacttg |
31604258 |
T |
|
| Q |
234 |
aaaatccattttgcacaaattatagtgatcgtag |
267 |
Q |
| |
|
||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
31604257 |
aaagtccattttgtacaaattatagggatcgtag |
31604224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 299 - 533
Target Start/End: Complemental strand, 31607788 - 31607555
Alignment:
| Q |
299 |
ttatttctgttgtgaattcaagtcatgcaccatacttgtctatacttgc-acttatgatagtgtttcaggagcatttaaactttcacttatgatgatttt |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||| | |||||||||||||||||| ||||||| || ||| ||||||||||| |||| |
|
|
| T |
31607788 |
ttatttctgttgtgaattcaagtcatgcaccatactttcctaaactttccacttatgatagtgtttcatgagcattgaagcttgcacttatgatgctttt |
31607689 |
T |
|
| Q |
398 |
cccaacttctaatttatttcacacagaaggaatcaattgtaaatgtatcatttgatttaccgctacccgaactgaaagctaatctgcataa-aaactgtg |
496 |
Q |
| |
|
| ||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||| |||| | ||||| |||| | ||||||| || | |||||| |
|
|
| T |
31607688 |
c---acttctaatttatctcatacagaaggaatcaattgtaaatgtatcttttgatttaacgcttcttgaactcaaagatgatctgcaaaacacactgtg |
31607592 |
T |
|
| Q |
497 |
aaactcagatttttgaaactgtggcagcatgcgatgc |
533 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
31607591 |
aaactcagatttttgaaacagtggcagcctgcgatgc |
31607555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 40 - 187
Target Start/End: Complemental strand, 31608042 - 31607895
Alignment:
| Q |
40 |
catatcctccaaagcccgtgttatattcacccgaaaggtcacaactacaagtgtcagatatgtcgtcatctgatttgtacgagacaaattcagttacagt |
139 |
Q |
| |
|
|||||||||||||||| || |||| ||| || |||||| ||| ||||||| ||||| ||||||| ||||||||||| || |||||||||||||||||||| |
|
|
| T |
31608042 |
catatcctccaaagccggtcttattttctccggaaaggccaccactacaattgtcatatatgtcttcatctgatttatatgagacaaattcagttacagt |
31607943 |
T |
|
| Q |
140 |
atcaaaatagttgttatttctataaattaaatggactaattaatttgt |
187 |
Q |
| |
|
|||||||| |||| | ||||||||| ||||||| ||||||||||| |
|
|
| T |
31607942 |
gtcaaaataactgttctatctataaatcaaatggatcaattaatttgt |
31607895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 40 - 187
Target Start/End: Complemental strand, 31614326 - 31614180
Alignment:
| Q |
40 |
catatcctccaaagcccgtgttatattcacccgaaaggtcacaactacaagtgtcagatatgtcgtcatctgatttgtacgagacaaattcagttacagt |
139 |
Q |
| |
|
||||||||||||| ||| | ||| ||||||| ||||| ||| ||||||||||| |||||| || ||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
31614326 |
catatcctccaaatcccttcttacattcaccataaaggccaccactacaagtgttagatatttcttcatccgatttgtacgagacaaattcaattacagt |
31614227 |
T |
|
| Q |
140 |
atcaaaatagttgttatttctataaattaaatggactaattaatttgt |
187 |
Q |
| |
|
||||||||| ||||| ||||||| ||| ||| ||| | |||||||||| |
|
|
| T |
31614226 |
atcaaaataattgtt-tttctatgaataaaaaggatttattaatttgt |
31614180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 299 - 380
Target Start/End: Complemental strand, 31604161 - 31604080
Alignment:
| Q |
299 |
ttatttctgttgtgaattcaagtcatgcaccatacttgtctatacttgcacttatgatagtgtttcaggagcatttaaactt |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||| ||||||| |||||| |
|
|
| T |
31604161 |
ttatttctgttgtgaattcaagtcatgcaccatacttgtctaaacatgcacttgtgatagtgtttcatgagcattgaaactt |
31604080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 31617767 - 31617710
Alignment:
| Q |
299 |
ttatttctgttgtgaattcaagtcatgcaccatacttgtctatacttgcacttatgat |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31617767 |
ttatttctgttgtgaattcaagtcatgcaccatacttgtctaaacttgcacttatgat |
31617710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 297 - 586
Target Start/End: Complemental strand, 31614075 - 31613781
Alignment:
| Q |
297 |
atttatttctgttgtgaattcaagtcatgcaccatacttgtctata-----cttgcacttatgatagtgtttcaggagcatttaaactttcacttatgat |
391 |
Q |
| |
|
|||| |||||||| ||||||| |||||||||||||||| ||||| | ||| | |||||| || ||||| ||||||| |||||||| |||||||| |
|
|
| T |
31614075 |
atttttttctgttttgaattctagtcatgcaccatactagtctaaattaaactttcctttatgactgtatttcatgagcattaaaactttcccttatgat |
31613976 |
T |
|
| Q |
392 |
gat---tttcccaacttctaatttatttcacacagaaggaatcaattgtaaatgtatcatttgatttaccgctacccgaactgaaagctaatctgcataa |
488 |
Q |
| |
|
||| ||||||| ||||||| ||||||| ||||| |||||| |||||| ||||||||||||| || | | | ||| | |||| |||| |||| || |
|
|
| T |
31613975 |
gatgcttttcccagattctaatctatttcatacagatggaatctgttgtaagtgtatcatttgatctaacagtttctgaatttaaagataatttgcagaa |
31613876 |
T |
|
| Q |
489 |
aaactgtgaaactcagatttttgaaactgtggcagcatgcgatgccaatctattcctagtagtggtgtttatgtaacaccataaacataaaacaccaa |
586 |
Q |
| |
|
|| | ||||||||||||||||||||| |||| ||| |||||||| || || |||| ||||| ||||| | ||||||| ||||||| ||||||||| |
|
|
| T |
31613875 |
aa--tatgaaactcagatttttgaaac-gtggtagcttgcgatgcaaacctgttcccgatagtgatgtttctataacaccgtaaacatcaaacaccaa |
31613781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 31439439 - 31439498
Alignment:
| Q |
19 |
aaggaccacttcattcaataccatatcctccaaagcccgtgttatattcacccgaaaggt |
78 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||| ||| || ||||||| |
|
|
| T |
31439439 |
aaggaccacttcattcaataccgtatcctccaaagcccgtcttattttctccagaaaggt |
31439498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 560 - 610
Target Start/End: Complemental strand, 31607549 - 31607499
Alignment:
| Q |
560 |
tgtaacaccataaacataaaacaccaaatcatgaatcaaaaatatttaaac |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
31607549 |
tgtaacaccataaacataaaacaccaaatcatgtatggaaaatatttaaac |
31607499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 31607904 - 31607857
Alignment:
| Q |
216 |
attagtttgttgaacttcaaaatcca-ttttgcacaaattatagtgat |
262 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
31607904 |
attaatttgttgaacttcaaaatccatttttgtacaaattatagtgat |
31607857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 570 - 631
Target Start/End: Complemental strand, 31603945 - 31603884
Alignment:
| Q |
570 |
taaacataaaacaccaaatcatgaatcaaaaatatttaaactcacggtctataaacaccaaa |
631 |
Q |
| |
|
||||| ||||||||||||||||| || ||||||||| ||| |||| ||| ||||||||||| |
|
|
| T |
31603945 |
taaacttaaaacaccaaatcatgcatggaaaatatttgaacccacgctctctaaacaccaaa |
31603884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 375 - 436
Target Start/End: Original strand, 52175241 - 52175303
Alignment:
| Q |
375 |
aaactttcacttatgatgattttcccaa-cttctaatttatttcacacagaaggaatcaattg |
436 |
Q |
| |
|
|||||| |||||| |||| |||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
52175241 |
aaacttgcacttaagatgctttttccaagcttctaatttatttcacacagaaggaatcaattg |
52175303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 39 - 165
Target Start/End: Original strand, 52174753 - 52174879
Alignment:
| Q |
39 |
ccatatcctccaaagcccgtgttatattcacccgaaaggtcacaactacaagtgtcagatatgtcgtcatctgatttgtacgagacaaattcagttacag |
138 |
Q |
| |
|
|||||||||||||||||||| |||| || || |||| | ||| |||| || ||||||| ||||| ||||| ||||| | ||||| ||||| ||||| |
|
|
| T |
52174753 |
ccatatcctccaaagcccgtcttatgttatcctgaaacgccaccactagaaatgtcagacatgtcttcatccaatttggatgagacgaattccattacaa |
52174852 |
T |
|
| Q |
139 |
tatcaaaatagttgttatttctataaa |
165 |
Q |
| |
|
| |||||||| | ||| |||||||||| |
|
|
| T |
52174853 |
tgtcaaaataatcgttctttctataaa |
52174879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 1748 - 1712
Alignment:
| Q |
19 |
aaggaccacttcattcaataccatatcctccaaagcc |
55 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
1748 |
aagggccacttcattcaatacaatatcctccaaagcc |
1712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0254 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0254
Description:
Target: scaffold0254; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 1802 - 1766
Alignment:
| Q |
19 |
aaggaccacttcattcaataccatatcctccaaagcc |
55 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
1802 |
aagggccacttcattcaatacaatatcctccaaagcc |
1766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 15063786 - 15063822
Alignment:
| Q |
19 |
aaggaccacttcattcaataccatatcctccaaagcc |
55 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
15063786 |
aagggccacttcattcaatacaatatcctccaaagcc |
15063822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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