View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11860_low_6 (Length: 530)
Name: NF11860_low_6
Description: NF11860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11860_low_6 |
 | |
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| [»] chr3 (2 HSPs) |
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| [»] chr8 (5 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 530
Target Start/End: Complemental strand, 24565200 - 24564671
Alignment:
| Q |
1 |
tataatttatggtttttagtgaattagtttttcatatttattcatattaatgtgtatagcattatacatagtatgtggaactatgatgtgaatttttgtc |
100 |
Q |
| |
|
||||||||||| |||| || |||||||||||||||||||| |||| ||||| |||||| | ||||||| || ||| ||| || ||||||||||||||||| |
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|
| T |
24565200 |
tataatttatgtttttgagagaattagtttttcatatttagtcatcttaatatgtatatctttatacaaaggatgcggacctttgatgtgaatttttgtc |
24565101 |
T |
|
| Q |
101 |
attcgaatttcatccttacctagtgatctttattgcatttgttatagtagatatagagaaaagaggaagaaataggaaaggactagggcatcaaggccac |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||| ||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
24565100 |
attcaaatttcatccttacctagtgatctttattacatttggtattgtagagatagagaaaagatgaagaaataggaaaggactagggcatcaaggccac |
24565001 |
T |
|
| Q |
201 |
atttttcatcaaccagtttttcgatagagaaatggagacatttcggtgtctgtggcagtgacgaagtcacacagtagtcggtgcagtggggggccaagtt |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24565000 |
atttttcatcaatcagtttttcgatagagaaatggagacatttcggtgtctgtggcagtgacgaagtcacacagtagtcggtgcagtggggggccaagtt |
24564901 |
T |
|
| Q |
301 |
tcttactgggagatggtggtggacgtgctatgctaacgtatcgacgagaaaactttcatgttctttcttctccatttcaggaaaggtatatagtgctctt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24564900 |
tcttactgggagatggtggtggacgtgctatgctaacgtatcgacgagaaaactttcatgttctttcttctccatttcaggaaaggtatatagtgctctt |
24564801 |
T |
|
| Q |
401 |
ctctcaacatgtaaatatttttgtctgggttacatcttttttctgttcttatttgttttattagtccgtggtagcagactcaccattcttgaagaggtca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24564800 |
ctctcaacatgtaaatatttttgtctgggttacatcttttttctgttcttatttgttttattagtccgtggtagcagactcaccattcttgaagaggtca |
24564701 |
T |
|
| Q |
501 |
aggtattggatcacacagggcggtgaagat |
530 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
24564700 |
aggtattggatcacacagggcggtgaagat |
24564671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 14164977 - 14164926
Alignment:
| Q |
155 |
agagaaaagaggaagaaataggaaaggactagggcatcaaggccacattttt |
206 |
Q |
| |
|
||||||||| ||||||||||||||||| | | ||||||||||||||||||| |
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|
| T |
14164977 |
agagaaaaggtgaagaaataggaaaggagttgagcatcaaggccacattttt |
14164926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 84 - 530
Target Start/End: Original strand, 45532953 - 45533386
Alignment:
| Q |
84 |
tgatgtgaatttttgtcattcgaatttcatccttacctagtgatctttattgcatttgttatagtagatatagagaaaagaggaagaaataggaaaggac |
183 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||| | ||||||||||| |||||| | | ||||| |||||||||||| |||||||||||||||| |
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|
| T |
45532953 |
tgatctgaatttttgtcattcaaatttcatccttaccaaatgatctttattacatttggttttgtagagatagagaaaagatcaagaaataggaaaggag |
45533052 |
T |
|
| Q |
184 |
tagggcatcaaggccacatttttcatcaaccagtttttcgatagagaaatggagacatttcggtgtctgtggcagtgacgaagtcacacagtagtcggtg |
283 |
Q |
| |
|
| |||||||||||||||||||||| ||| ||||||||| |||||||||||||| |||| ||||| ||||||||| ||||||||||| |
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|
| T |
45533053 |
tggggcatcaaggccacatttttc---------------gatggagaaatggtgacatttcggtgtcggtggtagtgaagaagtcacaaagtagtcggtg |
45533137 |
T |
|
| Q |
284 |
cagtggggggccaagtttcttactgggagatggtggtggacgtgctatgctaacgtatcgacgagaaaactttcatgttctttcttctccatttcaggaa |
383 |
Q |
| |
|
| || |||| |||||||||| ||||| |||||| |||| |||||||||||||||| |||||||||||||| ||||||||||||||| ||||| | || |
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|
| T |
45533138 |
cggtagggg-ccaagtttctaactggaagatggcggtgattatgctatgctaacgtatagacgagaaaactttgatgttctttcttctctatttctgaaa |
45533236 |
T |
|
| Q |
384 |
aggtatatag--tgctcttctctcaacatgtaaatatttttgtctgggttacatcttttttctgttcttatttgttttattagtccgtggtagcagactc |
481 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||| |||| |||| |
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|
| T |
45533237 |
aggtatatatactgctcttctctcagtatgtaaatatttttgtctaagtcacatcttttttctgttcttatttgttttattagtccatggcagcaaactc |
45533336 |
T |
|
| Q |
482 |
accattcttgaagaggtcaaggtatt-ggatcacacagggcggtgaagat |
530 |
Q |
| |
|
||||||||||||| |||| ||||| ||||||||| |||| |||||||| |
|
|
| T |
45533337 |
accattcttgaaggtgtcagagtattgggatcacacggggcagtgaagat |
45533386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 92 - 462
Target Start/End: Complemental strand, 44339230 - 44338865
Alignment:
| Q |
92 |
atttttgtcattcgaatttcatccttacctagtgatctttattgcatttgttatagtagatatagagaaaagaggaagaaataggaaaggactagggcat |
191 |
Q |
| |
|
|||||| |||||| ||||||||||||||| |||||||| | || || ||| | | ||||| | |||||||||| ||||||||||||||||| | | || |
|
|
| T |
44339230 |
atttttatcattccaatttcatccttaccaagtgatctgttttacacttggttttgtagagacagagaaaagatgaagaaataggaaaggaggggagaat |
44339131 |
T |
|
| Q |
192 |
caaggccacatttttcatcaaccagtttttcgatagagaaatggagacatttcggtgtctgtggcagtgacgaagtcacacagtagtcggtgcagtgggg |
291 |
Q |
| |
|
|||||||||||||||||||| | | ||| | ||||||||| | |||||||||||||| || || | ||||||||| |||||||| |||||||||| |
|
|
| T |
44339130 |
caaggccacatttttcatcagcaactttattgatagagaagtcgagacatttcggtggctttg------aagaagtcacaaagtagtcgatgcagtgggg |
44339037 |
T |
|
| Q |
292 |
ggccaagtttcttactgggagatggtggtggacgtgctatgctaacgtatcgacgagaaaact---ttcatgttctttcttctccatttcaggaaaggta |
388 |
Q |
| |
|
| | |||||| | || |||||||| ||||||||||||||||||||||| || ||||||||| || |||||||||||||| |||||| |||||||| |
|
|
| T |
44339036 |
gac-aagtttttaaccaggagatggcggtggacgtgctatgctaacgtagagatgagaaaactaatttactgttctttcttctctatttcaagaaaggta |
44338938 |
T |
|
| Q |
389 |
tatagtgctcttctctcaacatgtaaatatttttgtctgggttacatcttttttctgttcttatttgttttatt |
462 |
Q |
| |
|
|||| ||||||||| |||| |||||||||||||| | |||||||||| || ||| ||||||||||||||||||| |
|
|
| T |
44338937 |
tatactgctcttctttcaatatgtaaatatttttatttgggttacat-ttgtttatgttcttatttgttttatt |
44338865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 92 - 465
Target Start/End: Original strand, 44335744 - 44336113
Alignment:
| Q |
92 |
atttttgtcattcgaatttcatccttacctagtgatctttattgcatttgttatagtagatatagagaaaagaggaagaaataggaaaggactagggcat |
191 |
Q |
| |
|
|||||| |||||| ||||||||||||||| |||||||| | || || ||| | | ||||| | ||||||||| ||||||||||||||||| | |||| |
|
|
| T |
44335744 |
atttttatcattccaatttcatccttaccaagtgatctgttttacacttggttttgtagagacggagaaaagatgaagaaataggaaaggaggggagcat |
44335843 |
T |
|
| Q |
192 |
caaggccacatttttcatcaaccagtttttcgatagagaaatggagacatttcggtgtctgtggcagtgacgaagtcacacagtagtcggtgcagtgggg |
291 |
Q |
| |
|
|||||||||||||||||||| | | ||| | ||||||||| | ||||||||||||| || || | ||||||||| |||||||||||| ||||| |
|
|
| T |
44335844 |
caaggccacatttttcatcagcaactttattgatagagaagtcgagacatttcggtaactttg------aagaagtcacaaagtagtcggtgcgatgggg |
44335937 |
T |
|
| Q |
292 |
ggccaagtttcttactgggagatggtggtggacgtgctatgctaacgtatcgacgagaaaact---ttcatgttctttcttctccatttcaggaaaggta |
388 |
Q |
| |
|
| | |||||| | || ||||||| |||||||||||||||||||||||| || ||||||||| || | |||||||||||| ||||||||||||||| |
|
|
| T |
44335938 |
gac-aagtttttaaccaggagatgatggtggacgtgctatgctaacgtagagatgagaaaactaatttactattctttcttctctatttcaggaaaggta |
44336036 |
T |
|
| Q |
389 |
tatagtgctcttctctcaacatgtaaatatttttgtctgggttacatcttttttctgttcttatttgttttattagt |
465 |
Q |
| |
|
||| ||||||||| |||| |||||||||||||||| |||||||||| || ||| |||| ||||||||||||||||| |
|
|
| T |
44336037 |
tattctgctcttctttcaatatgtaaatatttttgtttgggttacattttgtttatgtttttatttgttttattagt |
44336113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 347 - 510
Target Start/End: Original strand, 40389524 - 40389688
Alignment:
| Q |
347 |
agaaaactttcatgttctttcttctccatttcaggaaaggtatatagtgctcttctctc---aacatgtaaatatttttgtctgggttacatcttttt-t |
442 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||| ||| |||||||||||| || || ||| | |||||||| ||||||||| ||||| | |
|
|
| T |
40389524 |
agaaaactttcatgttctttcttctc---ttcagaaaaggtagatactgctcttctctcaataagatataagtctttttgtccgggttacatttttttat |
40389620 |
T |
|
| Q |
443 |
ctgttcttatttgttttatta-gtccgtggtagcagactcaccattcttgaagaggtcaaggtattgga |
510 |
Q |
| |
|
|| ||||||| || ||||| |||| ||||||||||| |||||||||||| ||||||||| ||||||| |
|
|
| T |
40389621 |
ctattcttatatg-gctattatgtccatggtagcagacacaccattcttgatgaggtcaagatattgga |
40389688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 510
Target Start/End: Original strand, 29633594 - 29633757
Alignment:
| Q |
347 |
agaaaactttcatgttctttcttctccatttcaggaaaggtatatagtgctcttctctc---aacatgtaaatatttttgtctgggttacatcttttt-t |
442 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| | ||| || ||||||||| || |||||| | ||||||| ||||||||| ||||| | |
|
|
| T |
29633594 |
agaaaactttcatgttctttcttctc---ttcagaaaaggcagatattgttcttctctcaataagatgtaagtctttttgttcgggttacatttttttat |
29633690 |
T |
|
| Q |
443 |
ctgttcttatttgttttatta-gtccgtggtagcagactcaccattcttgaagaggtcaaggtattgga |
510 |
Q |
| |
|
|| |||||||||| ||||| ||| ||||||||||| | |||||||||| ||||||||| ||||||| |
|
|
| T |
29633691 |
ctattcttatttg-gctattacgtctatggtagcagacac-ccattcttgatgaggtcaagatattgga |
29633757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 348 - 509
Target Start/End: Complemental strand, 23096051 - 23095887
Alignment:
| Q |
348 |
gaaaactttcatgttctttcttctccatttcaggaaaggtatatagtgctcttctctcaacatgtaaatatttttgtctgggttacatcttttttc-tgt |
446 |
Q |
| |
|
|||| ||| |||||||||||||||| |||||||||||||||||| | || ||||||||| |||||||| ||||||||| ||||||| |||| | ||| |
|
|
| T |
23096051 |
gaaatcttccatgttctttcttctctctttcaggaaaggtatatacttctattctctcaatatgtaaatctttttgtctaggttacaatttttaacatgt |
23095952 |
T |
|
| Q |
447 |
tcttatttgttttatta-gtccgtggtagcagactcaccattcttgaagaggtca-aggtattgg |
509 |
Q |
| |
|
| |||||||||||||| ||| |||||||||||| | |||||||||| || |||| ||||||||| |
|
|
| T |
23095951 |
ttatatttgttttattatgtcggtggtagcagacacgccattcttgatgatgtcataggtattgg |
23095887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 347 - 510
Target Start/End: Original strand, 83284 - 83448
Alignment:
| Q |
347 |
agaaaactttcatgttctttcttctccatttcaggaaaggtatatagtgctcttctctcaaca---tgtaaatatttttgtctgggttacatcttttt-t |
442 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||| ||||||| ||| || ||||||||||| | ||||| ||||||||| ||||||||| ||||| | |
|
|
| T |
83284 |
agaaaacttttatgttctttcttctc---ttcagaaaaggtagatattgttcttctctcaataagatgtaagtatttttgttcgggttacatttttttct |
83380 |
T |
|
| Q |
443 |
ctgttcttatttgttttatta-gtccgtggtagcagactcaccattcttgaagaggtcaaggtattgga |
510 |
Q |
| |
|
|| |||||||||| | |||| |||| ||||||||||| |||||||| ||| ||||||||| ||||||| |
|
|
| T |
83381 |
ctattcttatttggct-attatgtccatggtagcagacacaccattcatgatgaggtcaagatattgga |
83448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 347 - 510
Target Start/End: Original strand, 48279680 - 48279844
Alignment:
| Q |
347 |
agaaaactttcatgttctttcttctccatttcaggaaaggtatatagtgctcttctctc---aacatgtaaatatttttgtctgggttacatcttttt-t |
442 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||| ||| |||||||||||| || ||||| | ||||||| |||||| || ||||| | |
|
|
| T |
48279680 |
agaaaactttcatgttctttcttctc---ttcagaaaaggtagatactgctcttctctcaataagatgtaggtctttttgttcgggttatatttttttat |
48279776 |
T |
|
| Q |
443 |
ctgttcttatttgttttatta-gtccgtggtagcagactcaccattcttgaagaggtcaaggtattgga |
510 |
Q |
| |
|
|| |||||||||| ||||| |||| |||||||||| |||||||||||| ||||||||| ||||||| |
|
|
| T |
48279777 |
ctattcttatttg-gctattatgtccagggtagcagacacaccattcttgatgaggtcaagatattgga |
48279844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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