View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11860_low_7 (Length: 503)
Name: NF11860_low_7
Description: NF11860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11860_low_7 |
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| [»] scaffold0094 (1 HSPs) |
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Alignment Details
Target: scaffold0094 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 14 - 485
Target Start/End: Complemental strand, 42354 - 41884
Alignment:
| Q |
14 |
atggacatcaagaaaaaatatctggtcataaaaacagaaaagcatgaattgcgaaagaagttttttcggttaaaacgccgtgcgactcgggggacataag |
113 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||| |
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| T |
42354 |
atggaaatcaagaaaaaatatctggtcataaaaactgaaaagcatgaattgcgaaagaagttttt-cggttaaaacgtcgtgcgactcgtgggacataag |
42256 |
T |
|
| Q |
114 |
acttcttggtcaagccaaaaagattgccggcagaatgctcctaccccaccatgcctggccctttaccttaccttaagaataagggggtatgcagcgtggg |
213 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
42255 |
acttcttggtcaagccaaaaagattgccagcagaatgctcctaccccaccatgcctggccctttacattaccttaagaataatggggtatgcagcgtgga |
42156 |
T |
|
| Q |
214 |
aaagaattaaagaagtgtctgatacaacaggtaaccttaaggagtggcggcaaagctcttgattgatcaacgcgagtgaactgtgcttagacgcttcgta |
313 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42155 |
aaagaattaaagaagtgtctgatacaacaggtaacattaaggagtggcggcaaagctcttgattgatcaacgcgagtgaactgtgcttagatgcttcgta |
42056 |
T |
|
| Q |
314 |
aaaccgcaccgatctacgagaggagctgatggatgagtaggcttcccctttcgatttacggaatgtgatctgggacacgatgggggtttgcgtgcctcgg |
413 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||| |
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| T |
42055 |
aaactgcaccgatctacgagaggagctgatcgatgagtaggcttcccctttcgatttaccgaatgttatatgggacacgatgggggtttgcgtgcctcgg |
41956 |
T |
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| Q |
414 |
taggaaagagatcaccggagtatagcacaagatcgccnnnnnnncttgctgccatggggtcgacctgtaaac |
485 |
Q |
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| T |
41955 |
taggaaagagatcaccggagtatagcacaagatcgccttgttttcttgctgtcatggggtcgacctgtaaac |
41884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 26 - 322
Target Start/End: Complemental strand, 45353155 - 45352857
Alignment:
| Q |
26 |
aaaaaatatctggtcataaaaacagaaaagcatgaattgcgaaagaagttttttcggttaaaacgccgtgcgactcgggggacataagacttcttggtca |
125 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| | |||||||||||||| |||||| |
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| T |
45353155 |
aaaaaatatttggtcataaaaacagaaaagcatgaattgtgaaagaagtttttttggttaaaatgccgtgcgactcagaggacataagacttcctggtca |
45353056 |
T |
|
| Q |
126 |
ag-ccaaaaagattgccggcagaatgctcctaccccaccatgcctggccctttaccttaccttaagaataagggggtatgcagcgtgggaaagaattaaa |
224 |
Q |
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|| | |||||||||| ||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||| | || ||||||||||| |
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| T |
45353055 |
agtcaaaaaagattgttggcagaatgct-cttgcccaccatgtctggccctttaccttaccttaagaataagggggtatgcaacatgtaaaagaattaaa |
45352957 |
T |
|
| Q |
225 |
gaagtgtctgat---acaacaggtaaccttaaggagtggcggcaaagctcttgattgatcaacgcgagtgaactgtgcttagacgcttcgtaaaaccgca |
321 |
Q |
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|| |||| |||| ||||||||||| |||||| ||||||||| |||||||| |||| ||||| | |||||||||||||||||||||| || |||| ||| |
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| T |
45352956 |
gatgtgtttgatacaacaacaggtaatcttaagaagtggcggcgaagctcttaattg-tcaacactagtgaactgtgcttagacgctttgtgaaactgca |
45352858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 26 - 322
Target Start/End: Complemental strand, 45362634 - 45362336
Alignment:
| Q |
26 |
aaaaaatatctggtcataaaaacagaaaagcatgaattgcgaaagaagttttttcggttaaaacgccgtgcgactcgggggacataagacttcttggtca |
125 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| | |||||||||||||| |||||| |
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| T |
45362634 |
aaaaaatatttggtcataaaaacagaaaagcatgaattgtgaaagaagtttttttggttaaaatgccgtgcgactcagaggacataagacttcctggtca |
45362535 |
T |
|
| Q |
126 |
ag-ccaaaaagattgccggcagaatgctcctaccccaccatgcctggccctttaccttaccttaagaataagggggtatgcagcgtgggaaagaattaaa |
224 |
Q |
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|| | |||||||||| ||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||| | || ||||||||||| |
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| T |
45362534 |
agtcaaaaaagattgttggcagaatgct-cttgcccaccatgtctggccctttaccttaccttaagaataagggggtatgcaacatgtaaaagaattaaa |
45362436 |
T |
|
| Q |
225 |
gaagtgtctgat---acaacaggtaaccttaaggagtggcggcaaagctcttgattgatcaacgcgagtgaactgtgcttagacgcttcgtaaaaccgca |
321 |
Q |
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|| |||| |||| ||||||||||| |||||| ||||||||| |||||||| |||| ||||| | |||||||||||||||||||||| || |||| ||| |
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| T |
45362435 |
gatgtgtttgatacaacaacaggtaatcttaagaagtggcggcgaagctcttaattg-tcaacactagtgaactgtgcttagacgctttgtgaaactgca |
45362337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 22 - 322
Target Start/End: Complemental strand, 45354733 - 45354446
Alignment:
| Q |
22 |
caagaaaaaatatctggtcataaaaacagaaaagcatgaattgcgaaagaagtttttt-cggttaaaacgccgtgcgactcgggggacataagacttctt |
120 |
Q |
| |
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|||||| |||||| |||| |||||||||||||| |||||||||||||||||||||||| | ||||| ||||||||||| | | || | | ||||||||| |
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| T |
45354733 |
caagaagaaatatttggttataaaaacagaaaaacatgaattgcgaaagaagtttttttcagttaagacgccgtgcgatttagagggcctgagacttctt |
45354634 |
T |
|
| Q |
121 |
ggtcaagccaaaaagattgccggcagaatgctcctaccccaccatgcctggccctttaccttaccttaagaataagggggtatgcagcgtgggaaagaat |
220 |
Q |
| |
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| T |
45354633 |
att-aagccaaaaagattgttggcaaaatgctcctatcccaccatgtctgaccctttaccttaccttaagaataaggaggtatgcagcgtggaaaagaat |
45354535 |
T |
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| Q |
221 |
taaagaagtgtctgatacaacaggtaaccttaaggagtggcggcaaagctcttgattgatcaacgcgagtgaactgtgcttagacgcttcgtaaaaccgc |
320 |
Q |
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|||||||||| |||||| ||||| ||| | |||||||||||||| |||||||||| ||||||||||| ||||| |||| |||||||||| |
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| T |
45354534 |
taaagaagtg------------ggtaactttaagaagtagtggcaaagctcttga-tgatcaacgctagtgaactgtgattagatgctttgtaaaaccgc |
45354448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 22 - 322
Target Start/End: Complemental strand, 45368474 - 45368187
Alignment:
| Q |
22 |
caagaaaaaatatctggtcataaaaacagaaaagcatgaattgcgaaagaagtttttt-cggttaaaacgccgtgcgactcgggggacataagacttctt |
120 |
Q |
| |
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|||||| |||||| |||| |||||||||||||| |||||||||||||||||||||||| | ||||| ||||||||||| | | || | | ||||||||| |
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| T |
45368474 |
caagaagaaatatttggttataaaaacagaaaaacatgaattgcgaaagaagtttttttcagttaagacgccgtgcgatttagagggcctgagacttctt |
45368375 |
T |
|
| Q |
121 |
ggtcaagccaaaaagattgccggcagaatgctcctaccccaccatgcctggccctttaccttaccttaagaataagggggtatgcagcgtgggaaagaat |
220 |
Q |
| |
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| ||||||||||||||| |||| |||||||||| ||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
45368374 |
att-aagccaaaaagattgttggcaaaatgctcctatcccaccatgtctgaccctttaccttaccttaagaataaggaggtatgcagcgtggaaaagaat |
45368276 |
T |
|
| Q |
221 |
taaagaagtgtctgatacaacaggtaaccttaaggagtggcggcaaagctcttgattgatcaacgcgagtgaactgtgcttagacgcttcgtaaaaccgc |
320 |
Q |
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|||||||||| |||||| ||||| ||| | |||||||||||||| |||||||||| ||||||||||| ||||| |||| |||||||||| |
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| T |
45368275 |
taaagaagtg------------ggtaactttaagaagtagtggcaaagctcttga-tgatcaacgctagtgaactgtgattagatgctttgtaaaaccgc |
45368189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 51768442 - 51768578
Alignment:
| Q |
26 |
aaaaaatatctggtcataaaaacagaaaagcatgaattgcgaaagaagttttttcggttaaaacgccgtgcgactcgggggacataagacttcttggtca |
125 |
Q |
| |
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|||||||||| |||||||||||||| || |||||||||| |||||| ||||||||||||||| | ||||| ||| | | |||||||||||| |||| |
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| T |
51768442 |
aaaaaatatcaggtcataaaaacaggaatacatgaattgctcaagaaggtttttcggttaaaacacggtgcggctcacagtaaataagacttcttagtca |
51768541 |
T |
|
| Q |
126 |
agccaaaaagattgccggcagaatgctcctaccccac |
162 |
Q |
| |
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| |||||| ||| ||||||||||||||||||||||| |
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| T |
51768542 |
atccaaaaggatatccggcagaatgctcctaccccac |
51768578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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