View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11860_low_8 (Length: 443)
Name: NF11860_low_8
Description: NF11860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11860_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 42207614 - 42207392
Alignment:
| Q |
30 |
ggttcttttctcaaatcagaagattgagttttgttgaaaaatcaagaatgagaatatgggcatatcccaacatgtatgaatgcaaatatgttggaataaa |
129 |
Q |
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| T |
42207614 |
ggttcttttctcaaatctgaagattgaattttgttgaaaaatcaagaatgagaatatgggcatatcccaacatgtatgaatgcaaatatgttggaattaa |
42207515 |
T |
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| Q |
130 |
aattcaaaaattaccgtagcaaacgaaaaagatgactgagggacccaacatttgtaaaagtttcgatcaacattcgtatagttttgttcttttcttgaag |
229 |
Q |
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| T |
42207514 |
aattcaaaaattaccgtagcaaacgaaaaagatgactgagggacccaacattcgtaaaagtttcgatcaacattcgtatagttttgttcttttcttgtag |
42207415 |
T |
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| Q |
230 |
aaaaaataatgaaacctcaataa |
252 |
Q |
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||||||||||||||||||||||| |
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| T |
42207414 |
aaaaaataatgaaacctcaataa |
42207392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 309 - 431
Target Start/End: Complemental strand, 42207393 - 42207266
Alignment:
| Q |
309 |
aacagaaggatctaaaatgcagtctcttttagaagttgaacagatgtcacacatgttagtttatccatcaccaaaccaagagatacattttctctgccca |
408 |
Q |
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| T |
42207393 |
aacagaaggatctaaaatgcagtctcttttagaagttgaacagatgtcacacatgttagtttatccatcaccaaaccaagggatacatattctctgccca |
42207294 |
T |
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| Q |
409 |
g-----aatcaacttcatgtgaagtttc |
431 |
Q |
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| T |
42207293 |
gaatcgaatcaacttcatgtgaagtttc |
42207266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 352 - 393
Target Start/End: Complemental strand, 42208886 - 42208845
Alignment:
| Q |
352 |
atgtcacacatgttagtttatccatcaccaaaccaagagata |
393 |
Q |
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| T |
42208886 |
atgtcacacatgctagtttatccatcaccaaaccaagggata |
42208845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 387
Target Start/End: Complemental strand, 6918331 - 6918293
Alignment:
| Q |
349 |
cagatgtcacacatgttagtttatccatcaccaaaccaa |
387 |
Q |
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| T |
6918331 |
cagatgtcacacatgctagtttatccatcaccaaaccaa |
6918293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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