View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11861_high_10 (Length: 498)
Name: NF11861_high_10
Description: NF11861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11861_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 21 - 341
Target Start/End: Original strand, 27480848 - 27481165
Alignment:
| Q |
21 |
ttcttgaatcagagctggagggtaggatttaaggatgagcctatactcttactatctcaaaaacaacannnnnnnnnnatgaaagttgctctatagacct |
120 |
Q |
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| T |
27480848 |
ttcttgaatcagagctggagggtaggatttaaggacgagcctatactcttactatctcaaaaacaacatttttttt--atgaaagttgctctatagacct |
27480945 |
T |
|
| Q |
121 |
ctaggttgctcaataaccttgaaaaaggtcgaacgaagtatagattctgatgaataaaagctgatcgtaatgtatcttccgattggtttgtgtcattgaa |
220 |
Q |
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| T |
27480946 |
ctaggttgctcaataaccttgaaaaaggtcgaacgaagtatatattcagatgaataaaagctgatcggaatgtatcttccgattggtttgtgtcattgaa |
27481045 |
T |
|
| Q |
221 |
agattttgataaattgaggtgcttttgagccaacattagaggcctatatagtaannnnnnnggtcatgcatagccaccctgatttcatgcaacaagccct |
320 |
Q |
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| T |
27481046 |
tgattttgataaattgaggtgcttttgagccaacattagaggcctatatagtaattttttt-gtcatgcatagccaccctgatttcatgcaacaagccct |
27481144 |
T |
|
| Q |
321 |
gttggttttgatacatatgga |
341 |
Q |
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| T |
27481145 |
gttggttttgatacatatgga |
27481165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 21 - 341
Target Start/End: Original strand, 27488200 - 27488517
Alignment:
| Q |
21 |
ttcttgaatcagagctggagggtaggatttaaggatgagcctatactcttactatctcaaaaacaacannnnnnnnnnatgaaagttgctctatagacct |
120 |
Q |
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| T |
27488200 |
ttcttgaatcagagctggagggtaggatttaaggacgagcctatactcttactatctcaaaaacaacatttttttt--atgaaagttgctctatagacct |
27488297 |
T |
|
| Q |
121 |
ctaggttgctcaataaccttgaaaaaggtcgaacgaagtatagattctgatgaataaaagctgatcgtaatgtatcttccgattggtttgtgtcattgaa |
220 |
Q |
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| T |
27488298 |
ctaggttgctcaataaccttgaaaaaggtcgaacgaagtatatattctgatgaataaaagctgatcggaatgtatcttccgattggtttgagtcattgaa |
27488397 |
T |
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| Q |
221 |
agattttgataaattgaggtgcttttgagccaacattagaggcctatatagtaannnnnnnggtcatgcatagccaccctgatttcatgcaacaagccct |
320 |
Q |
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| T |
27488398 |
agattttgataaattgagatgcttttgagccaacattagactcctatatagtaattttttt-gtcatgcatagccacccttatttcatgcaacaagccct |
27488496 |
T |
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| Q |
321 |
gttggttttgatacatatgga |
341 |
Q |
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| T |
27488497 |
gttggttttgatacatatgga |
27488517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 343 - 489
Target Start/End: Original strand, 27481497 - 27481646
Alignment:
| Q |
343 |
tcgagattcaaatttgattcattttcagttagtggaatcgagatcttgattatattttttggnnnnnnnnn---gtgtggacctaaaataaaatgcacaa |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27481497 |
tcgagattcaaatttgattcattttcagttagtggaatcgagatcttgattatattttttggaagaaaaaaaaagtgtggacctaaaataaaatgcacaa |
27481596 |
T |
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| Q |
440 |
tggccatatttaggataagaaccgactaaaacgaggacacgtgcctatgc |
489 |
Q |
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| T |
27481597 |
tggccatatttaggataagaactgactaaaacgaggacacgtgcatatgc |
27481646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 343 - 489
Target Start/End: Original strand, 27488739 - 27488888
Alignment:
| Q |
343 |
tcgagattcaaatttgattcattttcagttagtggaatcgagatcttgattatattttttggnnnnnnnnn---gtgtggacctaaaataaaatgcacaa |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27488739 |
tcgagattcaaatttgattcattttcagttagtggaatcgagatcttgattatattttttggaagaaaaaaaaagtgtggacctaaaataaaatgcacaa |
27488838 |
T |
|
| Q |
440 |
tggccatatttaggataagaaccgactaaaacgaggacacgtgcctatgc |
489 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
27488839 |
tggccatatttaggataagaactgactaaaacgaggacacgtgcatatgc |
27488888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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