View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11861_high_12 (Length: 419)

Name: NF11861_high_12
Description: NF11861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11861_high_12
NF11861_high_12
[»] chr8 (41 HSPs)
chr8 (11-414)||(36121578-36121968)
chr8 (11-139)||(43550838-43550967)
chr8 (30-139)||(28425525-28425634)
chr8 (11-133)||(22936826-22936949)
chr8 (30-113)||(33627087-33627170)
chr8 (30-112)||(41289111-41289193)
chr8 (21-139)||(44926788-44926906)
chr8 (19-139)||(8124918-8125038)
chr8 (19-107)||(25698001-25698089)
chr8 (30-139)||(40742071-40742180)
chr8 (54-130)||(3097283-3097359)
chr8 (54-140)||(3467479-3467565)
chr8 (54-140)||(27649692-27649778)
chr8 (30-139)||(40742348-40742455)
chr8 (54-139)||(6399185-6399270)
chr8 (54-111)||(41981132-41981189)
chr8 (58-129)||(4941862-4941933)
chr8 (30-113)||(29023212-29023295)
chr8 (30-107)||(36114093-36114170)
chr8 (59-139)||(30081732-30081812)
chr8 (54-133)||(16915014-16915093)
chr8 (30-113)||(42148978-42149061)
chr8 (57-133)||(440269-440345)
chr8 (54-118)||(3619145-3619209)
chr8 (19-107)||(38114424-38114512)
chr8 (29-100)||(24897639-24897710)
chr8 (57-131)||(38152254-38152328)
chr8 (30-139)||(26125519-26125628)
chr8 (54-107)||(45147327-45147380)
chr8 (54-128)||(34342930-34343002)
chr8 (30-103)||(11126499-11126572)
chr8 (73-118)||(24297687-24297732)
chr8 (30-99)||(42143417-42143486)
chr8 (11-112)||(15206670-15206772)
chr8 (73-108)||(41408168-41408203)
chr8 (74-112)||(26243065-26243103)
chr8 (54-112)||(31246392-31246450)
chr8 (77-123)||(37458403-37458449)
chr8 (168-205)||(25698153-25698190)
chr8 (168-236)||(3097407-3097475)
chr8 (57-125)||(42600490-42600558)
[»] chr2 (33 HSPs)
chr2 (18-257)||(14820993-14821232)
chr2 (272-414)||(14820809-14820948)
chr2 (11-139)||(5916273-5916401)
chr2 (11-139)||(36312225-36312353)
chr2 (11-138)||(8170262-8170389)
chr2 (19-199)||(7472713-7472896)
chr2 (51-133)||(28261248-28261330)
chr2 (11-106)||(1945070-1945166)
chr2 (30-130)||(9988552-9988652)
chr2 (11-113)||(2213480-2213583)
chr2 (11-113)||(28127318-28127421)
chr2 (22-107)||(39141512-39141597)
chr2 (51-139)||(25940313-25940401)
chr2 (57-206)||(36548075-36548230)
chr2 (24-113)||(23358232-23358321)
chr2 (54-139)||(28641590-28641675)
chr2 (21-139)||(32501934-32502052)
chr2 (54-113)||(2234901-2234959)
chr2 (30-133)||(26207980-26208083)
chr2 (30-113)||(44619112-44619195)
chr2 (21-118)||(31562728-31562823)
chr2 (57-139)||(42516053-42516135)
chr2 (30-139)||(7295399-7295506)
chr2 (30-133)||(7296109-7296212)
chr2 (30-77)||(31224690-31224737)
chr2 (54-118)||(42089607-42089671)
chr2 (29-107)||(3602509-3602587)
chr2 (75-133)||(39106764-39106822)
chr2 (94-139)||(2212769-2212814)
chr2 (53-118)||(3552920-3552985)
chr2 (73-118)||(3853869-3853914)
chr2 (54-107)||(16467066-16467119)
chr2 (30-107)||(25747932-25748009)
[»] chr1 (40 HSPs)
chr1 (18-257)||(6464453-6464692)
chr1 (19-236)||(45709915-45710132)
chr1 (9-257)||(40821671-40821918)
chr1 (271-414)||(45709502-45709644)
chr1 (30-257)||(50977394-50977626)
chr1 (11-139)||(25229970-25230098)
chr1 (271-414)||(6464272-6464413)
chr1 (11-138)||(10470554-10470681)
chr1 (54-257)||(13055837-13056046)
chr1 (30-133)||(31223343-31223446)
chr1 (11-139)||(20800311-20800440)
chr1 (11-139)||(35569236-35569365)
chr1 (11-130)||(1199799-1199919)
chr1 (54-139)||(4369880-4369965)
chr1 (30-149)||(12468166-12468284)
chr1 (19-133)||(43728920-43729034)
chr1 (11-133)||(48510877-48511000)
chr1 (22-139)||(6166073-6166190)
chr1 (54-139)||(7826432-7826517)
chr1 (30-139)||(42850273-42850382)
chr1 (30-138)||(40229524-40229632)
chr1 (139-236)||(11561709-11561806)
chr1 (54-139)||(5410603-5410688)
chr1 (21-198)||(35535973-35536153)
chr1 (21-139)||(11023374-11023492)
chr1 (29-107)||(12247415-12247493)
chr1 (57-139)||(31933690-31933772)
chr1 (54-139)||(36205154-36205239)
chr1 (60-140)||(11051395-11051474)
chr1 (19-120)||(13931605-13931706)
chr1 (30-110)||(25061218-25061298)
chr1 (19-102)||(9447533-9447616)
chr1 (147-257)||(4487354-4487464)
chr1 (171-236)||(25229859-25229924)
chr1 (33-118)||(47123370-47123455)
chr1 (57-118)||(50406114-50406175)
chr1 (54-112)||(15884216-15884274)
chr1 (168-205)||(43729072-43729109)
chr1 (168-256)||(9447400-9447488)
chr1 (73-125)||(46033210-46033262)
[»] chr4 (49 HSPs)
chr4 (11-257)||(54152848-54153097)
chr4 (11-257)||(32238092-32238340)
chr4 (11-257)||(14072310-14072555)
chr4 (271-414)||(54152641-54152783)
chr4 (21-236)||(30841953-30842174)
chr4 (271-414)||(32238383-32238524)
chr4 (21-236)||(48407741-48407962)
chr4 (30-133)||(51922870-51922973)
chr4 (30-120)||(48550480-48550570)
chr4 (11-139)||(16566229-16566358)
chr4 (21-133)||(43781562-43781674)
chr4 (11-133)||(26651881-26652004)
chr4 (30-140)||(43772176-43772286)
chr4 (54-236)||(31520447-31520634)
chr4 (30-140)||(39636708-39636818)
chr4 (30-139)||(19592284-19592393)
chr4 (30-139)||(49136446-49136555)
chr4 (54-138)||(9889411-9889495)
chr4 (11-140)||(42944931-42945061)
chr4 (54-139)||(4954128-4954213)
chr4 (54-186)||(9893583-9893720)
chr4 (30-139)||(46830122-46830231)
chr4 (57-233)||(15603184-15603366)
chr4 (11-113)||(29149340-29149443)
chr4 (16-93)||(39187704-39187782)
chr4 (30-203)||(38693904-38694081)
chr4 (21-121)||(28986963-28987061)
chr4 (19-139)||(15619541-15619659)
chr4 (54-133)||(14564223-14564302)
chr4 (28-131)||(26426165-26426268)
chr4 (54-140)||(2175224-2175310)
chr4 (54-140)||(54735727-54735813)
chr4 (30-106)||(6138673-6138749)
chr4 (54-133)||(30887230-30887309)
chr4 (30-140)||(49519653-49519763)
chr4 (54-139)||(6505125-6505210)
chr4 (30-133)||(13183103-13183206)
chr4 (54-140)||(14075938-14076024)
chr4 (33-118)||(25312660-25312745)
chr4 (58-139)||(55638868-55638949)
chr4 (54-139)||(56241912-56241997)
chr4 (54-107)||(48908231-48908284)
chr4 (30-118)||(14054796-14054884)
chr4 (73-107)||(5025485-5025519)
chr4 (54-112)||(13167476-13167534)
chr4 (77-118)||(47384950-47384991)
chr4 (33-118)||(54150471-54150556)
chr4 (73-125)||(5937397-5937449)
chr4 (85-113)||(43628685-43628713)
[»] chr6 (14 HSPs)
chr6 (11-257)||(6208096-6208345)
chr6 (271-414)||(6208394-6208536)
chr6 (11-139)||(16548078-16548207)
chr6 (21-139)||(13739145-13739263)
chr6 (21-133)||(13744651-13744763)
chr6 (30-128)||(29409304-29409402)
chr6 (11-138)||(16442383-16442511)
chr6 (19-139)||(21455821-21455940)
chr6 (11-122)||(17830031-17830143)
chr6 (33-140)||(10826029-10826136)
chr6 (30-205)||(31132334-31132512)
chr6 (29-133)||(7215520-7215623)
chr6 (30-139)||(33899058-33899167)
chr6 (30-107)||(699529-699605)
[»] chr3 (41 HSPs)
chr3 (11-257)||(44939449-44939697)
chr3 (11-257)||(8424763-8425009)
chr3 (11-250)||(35425162-35425401)
chr3 (11-257)||(30811565-30811811)
chr3 (21-236)||(42318166-42318387)
chr3 (11-138)||(48189475-48189602)
chr3 (21-235)||(38125485-38125705)
chr3 (30-133)||(38172360-38172463)
chr3 (30-257)||(15511429-15511661)
chr3 (30-139)||(10334077-10334186)
chr3 (30-139)||(16246147-16246256)
chr3 (54-139)||(20813085-20813170)
chr3 (30-149)||(53179778-53179896)
chr3 (54-236)||(38340643-38340830)
chr3 (54-139)||(52966886-52966971)
chr3 (271-414)||(44939739-44939868)
chr3 (54-133)||(10853344-10853423)
chr3 (21-112)||(53074869-53074960)
chr3 (30-133)||(31618940-31619043)
chr3 (30-139)||(3348182-3348291)
chr3 (30-139)||(44224701-44224810)
chr3 (48-139)||(23496263-23496354)
chr3 (11-113)||(26519629-26519732)
chr3 (11-236)||(50664597-50664826)
chr3 (31-129)||(21224939-21225037)
chr3 (30-107)||(23207121-23207196)
chr3 (11-139)||(31084147-31084275)
chr3 (54-139)||(22736920-22737005)
chr3 (57-159)||(25847946-25848053)
chr3 (54-139)||(35930677-35930762)
chr3 (58-139)||(14959658-14959739)
chr3 (54-107)||(32357482-32357535)
chr3 (73-118)||(37698485-37698530)
chr3 (33-118)||(42475669-42475754)
chr3 (54-107)||(45423845-45423898)
chr3 (68-105)||(55087593-55087630)
chr3 (54-110)||(30810022-30810078)
chr3 (180-227)||(10334001-10334048)
chr3 (72-125)||(44610311-44610363)
chr3 (73-125)||(30811277-30811329)
chr3 (57-125)||(49526749-49526817)
[»] scaffold0007 (1 HSPs)
scaffold0007 (11-258)||(29156-29403)
[»] chr5 (35 HSPs)
chr5 (22-257)||(2430338-2430573)
chr5 (11-257)||(33953932-33954178)
chr5 (11-139)||(22482142-22482271)
chr5 (30-236)||(28869553-28869763)
chr5 (30-139)||(41834845-41834954)
chr5 (21-139)||(32454490-32454608)
chr5 (11-140)||(13253113-13253242)
chr5 (30-107)||(10058059-10058136)
chr5 (57-206)||(24045711-24045866)
chr5 (30-149)||(40495408-40495526)
chr5 (30-139)||(9275534-9275643)
chr5 (11-113)||(3667833-3667936)
chr5 (57-186)||(7714841-7714975)
chr5 (54-133)||(32030675-32030752)
chr5 (54-133)||(3060297-3060375)
chr5 (16-122)||(4292119-4292226)
chr5 (11-113)||(35760168-35760271)
chr5 (22-131)||(40791111-40791220)
chr5 (30-142)||(40885160-40885273)
chr5 (22-131)||(42146269-42146378)
chr5 (30-113)||(41740643-41740726)
chr5 (54-133)||(27021087-27021167)
chr5 (30-149)||(16158515-16158634)
chr5 (54-110)||(7386006-7386062)
chr5 (30-110)||(8049101-8049181)
chr5 (30-110)||(39988017-39988097)
chr5 (30-106)||(5710436-5710511)
chr5 (54-107)||(2694834-2694887)
chr5 (54-101)||(34107021-34107068)
chr5 (30-107)||(7178763-7178840)
chr5 (54-107)||(41959446-41959499)
chr5 (168-236)||(3060419-3060487)
chr5 (73-113)||(3747683-3747723)
chr5 (57-113)||(16843517-16843573)
chr5 (73-125)||(40979985-40980037)
[»] chr7 (33 HSPs)
chr7 (30-133)||(3342756-3342859)
chr7 (30-257)||(34366022-34366254)
chr7 (11-140)||(44967419-44967549)
chr7 (11-131)||(38230036-38230157)
chr7 (16-139)||(37639390-37639514)
chr7 (28-199)||(9456001-9456176)
chr7 (30-139)||(39391177-39391286)
chr7 (55-236)||(47301622-47301799)
chr7 (54-139)||(12632147-12632232)
chr7 (30-139)||(47021879-47021988)
chr7 (11-125)||(10371978-10372093)
chr7 (30-138)||(37562531-37562639)
chr7 (23-139)||(48134540-48134656)
chr7 (33-139)||(43737982-43738088)
chr7 (11-140)||(48459669-48459799)
chr7 (30-139)||(3622500-3622609)
chr7 (30-139)||(3750647-3750755)
chr7 (30-222)||(32205796-32205994)
chr7 (16-133)||(386506-386624)
chr7 (33-139)||(3375450-3375556)
chr7 (54-140)||(47217605-47217691)
chr7 (28-140)||(34010299-34010411)
chr7 (54-140)||(42740351-42740437)
chr7 (18-107)||(19095929-19096017)
chr7 (22-118)||(43631727-43631823)
chr7 (54-133)||(46541566-46541645)
chr7 (30-87)||(37008390-37008447)
chr7 (54-107)||(1766417-1766470)
chr7 (74-111)||(37886854-37886891)
chr7 (54-121)||(34011025-34011093)
chr7 (56-105)||(36920244-36920293)
chr7 (73-125)||(4035908-4035960)
chr7 (70-118)||(43581616-43581664)
[»] scaffold0369 (1 HSPs)
scaffold0369 (30-143)||(8384-8497)
[»] scaffold0381 (1 HSPs)
scaffold0381 (31-138)||(9051-9158)
[»] scaffold0005 (1 HSPs)
scaffold0005 (54-133)||(253073-253152)
[»] scaffold0394 (1 HSPs)
scaffold0394 (46-133)||(5895-5987)
[»] scaffold0983 (1 HSPs)
scaffold0983 (30-142)||(2321-2433)
[»] scaffold0184 (1 HSPs)
scaffold0184 (73-125)||(9254-9306)
[»] scaffold0217 (1 HSPs)
scaffold0217 (70-139)||(2120-2189)


Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 414
Target Start/End: Original strand, 36121578 - 36121968
Alignment:
Q  11 tgagatgaatgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaa 110  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||           ||||||||||||||||||||||| ||||| ||    
T  36121578 tgagttgaatgtgaatagattatgtttggatacactttactataagtgattctcatg-----------tttgaatagtttgaatcaaaattaattttgaa 36121666  T
Q  111 tgtctaatgactaaattatccttataattaaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatt 210  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36121667 tgtctaataactaaattatccttataattaaaactaaatatttcattcttaattaaaataattatttaaacttatctaaaatcataaatggattttgatt 36121766  T
Q  211 tgttcacaaatttatttaaaaataatttcatattataagagttttttcataa-nnnnnnnngatcaattgagttatttttaataactccctcacgtctcc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  36121767 tgttcacaaatttatttaaaaataatttcatattataagagttttttcataattttttttttatcaattgagttatttttaataactccctcacgtctcc 36121866  T
Q  310 cactcccccttgatcttcatttctccataagccttcacttctacccactacccatttccatctttttctccaactctcaatactctacattttccttttc 409  Q
    |||||||| |    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  36121867 cactccccat---gcttcatttctccataagccttcacttctacccactatccatttccatctttttctccacctctcaatactctacattttccttttc 36121963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 43550967 - 43550838
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| |||||||||||||||||| || ||||||||||| || |||||||||||||| ||| |||||||||||||||||||| |    
T  43550967 tgagttgaatgtgaattgatttatgtttggatacactttattaaaagtgattcttgtgggttgatgttgtttggataatttgaatcaaaattgattttga 43550868  T
Q  110 atgtctaatgactaaattatccttataatt 139  Q
    |||| ||| ||||||| ||||||| |||||    
T  43550867 atgtgtaaagactaaactatccttttaatt 43550838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 28425525 - 28425634
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||||||||  || |||||||||||||||||||| |||||||| |||||||||||||||||||||||| || || ||||||| ||| |||    
T  28425525 ttatgtttggatacactttcttacaagtgattcttatgagttgacgttgtttggatagtttgaatcaaaattgattttgaacgtgtaatgaccaaactat 28425624  T
Q  130 ccttataatt 139  Q
    |||| |||||    
T  28425625 ccttttaatt 28425634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 22936826 - 22936949
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| |||||||||||||||||| |||||||||||||| ||  ||||||||||||| ||||||||||||||| ||| |||| |    
T  22936826 tgagttgaatgtgaattgatttatgtttggatacactttattagaagtgattcttgtggattgatgttgtttggatagtttgaatcaaatttggttttga 22936925  T
Q  110 atgtctaatgactaaattatcctt 133  Q
    || | ||||||||||| |||||||    
T  22936926 atatataatgactaaactatcctt 22936949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 33627087 - 33627170
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgt 113  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| |||||| |||||    
T  33627087 ttatgtttggatacactttactaaaagtgattcttatgagttaatgttgtttggatagtttgaatcaaaatcgattttgaatgt 33627170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 41289111 - 41289193
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatg 112  Q
    ||||||||||||||||||||||| |||||||||||||  |||||||||||||| |||||||||||||||||||||||| ||||    
T  41289111 ttatgtttggatacactttactaaaagtgattcttataggttgatgttgtttggatagtttgaatcaaaattgattttgaatg 41289193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 44926906 - 44926788
Alignment:
Q  21 gtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatga 120  Q
    |||||| ||||||||||||||||||||   || |||||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||  |||||    
T  44926906 gtgaattgattatgtttggatacacttgtttaaaagtgattcttatgagttgatgttatttggatagtttgaatcaaaattaattttgaatgtaaaatga 44926807  T
Q  121 ctaaattatccttataatt 139  Q
    | |||||||| || |||||    
T  44926806 ccaaattatctttgtaatt 44926788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 8125038 - 8124918
Alignment:
Q  19 atgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaat 118  Q
    |||||||| |||||||||||||||||||    || |||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||  ||||    
T  8125038 atgtgaattgattatgtttggatacactcatttaaaagtgattcttaggagttgaagttgtttggatagtttgaatcaaaattgattttaaatggataat 8124939  T
Q  119 gactaaattatccttataatt 139  Q
    ||| || ||| |||| |||||    
T  8124938 gaccaacttacccttttaatt 8124918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 25698001 - 25698089
Alignment:
Q  19 atgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttt 107  Q
    |||||||| ||||||||||||||| ||||   || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25698001 atgtgaattgattatgtttggataaacttatttaaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 25698089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 40742180 - 40742071
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||||||||| || || |||||||||||||||||| ||||||| ||  ||||||| ||| |||||||| ||||| ||||||  |||||||    
T  40742180 ttatgtttggatacactttaataaaattgattcttatgagttgatattgtttggatgatttgaatgaaacttgattttgaatgtgtaatgatcaaattat 40742081  T
Q  130 ccttataatt 139  Q
    |||| |||||    
T  40742080 ccttttaatt 40742071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 3097283 - 3097359
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatc 130  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| || || || |||| ||||||||    
T  3097283 aagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaacgtgtattgaccaaattatc 3097359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 3467565 - 3467479
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatta 140  Q
    ||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||| |  |||||| ||| ||||||| ||||||    
T  3467565 aagtgattcttatgaattgatgttggttggatagtttgaatcaaaattgattttaaatatggaatgaccaaactatccttttaatta 3467479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 27649778 - 27649692
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatta 140  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||  |  |||||| |||||| |||| ||||||    
T  27649778 aagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaacattgaatgaccaaattacccttttaatta 27649692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 40742348 - 40742455
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||||||  | |  |||||||||||||||||||||| |||||| ||| ||| |||||||||||||||||||||| || |||| ||||||     
T  40742348 ttatgtttggatacact--aatgtaagtgattcttatgagttgatgatgtttggatattttaaatcaaaattgattttaaatgtgtagtgaccaaattac 40742445  T
Q  130 ccttataatt 139  Q
    |||| |||||    
T  40742446 ccttttaatt 40742455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 6399185 - 6399270
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatt 139  Q
    ||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| |||||  |||||| |||||||| || |||||    
T  6399185 aagtgattcttatgagttgatgttgtttggataattttaatcaaaattgattttgaatgtgcaatgaccaaattatctttttaatt 6399270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 41981189 - 41981132
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaat 111  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  41981189 aagtgattcttatgagttgatgttgtttggatactttgaatcaaaattgattttaaat 41981132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 4941862 - 4941933
Alignment:
Q  58 gattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||  |||||| |||||||    
T  4941862 gattcttatgagttgatgttgtttgaataatttgaattaaaattgattttgaatgtaaaatgaccaaattat 4941933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 29023295 - 29023212
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgt 113  Q
    |||| |||||||||||||   || || ||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  29023295 ttatatttggatacacttgtttaaaattgattgttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgt 29023212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 36114093 - 36114170
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttt 107  Q
    |||||||||||||||||    || ||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||    
T  36114093 ttatgtttggatacactcgtttaaaagtgattcttatgagttgatattgtttggataatttgaatcaaaattgatttt 36114170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 30081732 - 30081812
Alignment:
Q  59 attcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatt 139  Q
    ||||||||| | |||||||||||| ||||||||  ||||||||||||||| |||| ||||||| ||||||||||| |||||    
T  30081732 attcttatgggctgatgttgtttggatagtttgtttcaaaattgattttagatgtgtaatgaccaaattatccttttaatt 30081812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 16915093 - 16915014
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatcctt 133  Q
    |||||||||||||||||| ||| ||||||  | ||||| ||||||||||||||| ||||| |||||||||||||| ||||    
T  16915093 aagtgattcttatgagttaatgatgtttggttggtttgtatcaaaattgattttgaatgtgtaatgactaaattaacctt 16915014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 42149061 - 42148978
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgt 113  Q
    ||||||||||||| ||||   || ||||||||| ||||||||||||||||||  ||| |||||||||||||||||||| |||||    
T  42149061 ttatgtttggatagacttatttaaaagtgattcgtatgagttgatgttgtttagataatttgaatcaaaattgattttgaatgt 42148978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 440269 - 440345
Alignment:
Q  57 tgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatcctt 133  Q
    ||||||||||||||| | |||||||| |||| ||||||||||| ||||||| ||||| ||||||| || ||||||||    
T  440269 tgattcttatgagttaacgttgtttggatagattgaatcaaaactgattttgaatgtataatgaccaacttatcctt 440345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 3619145 - 3619209
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaat 118  Q
    ||||||||||||| | |  |||||||||| |||||||||||||||||||||||||||||| ||||    
T  3619145 aagtgattcttatcaatgtatgttgtttggatagtttgaatcaaaattgattttaaatgtataat 3619209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 38114512 - 38114424
Alignment:
Q  19 atgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttt 107  Q
    |||||||| |||||||||||||||||||    |  |||||||||||||||||||| |||||||||||| || |||  ||||||||||||    
T  38114512 atgtgaattgattatgtttggatacactcggtttcaagtgattcttatgagttgaggttgtttgaatatttcgaacaaaaattgatttt 38114424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 24897639 - 24897710
Alignment:
Q  29 attatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaat 100  Q
    |||||||||||||||| ||   || || |||||||||||||||||||||||||| ||| |||||||||||||    
T  24897639 attatgtttggatacatttatttaaaattgattcttatgagttgatgttgtttggataatttgaatcaaaat 24897710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 38152254 - 38152328
Alignment:
Q  57 tgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatcc 131  Q
    |||||||||||||||||||| ||||| ||| ||| |||||||||||||||| || || ||||||| ||| |||||    
T  38152254 tgattcttatgagttgatgtggtttggatactttaaatcaaaattgattttgaacgtgtaatgaccaaagtatcc 38152328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 26125628 - 26125519
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||||||    || || ||||||||||||||||||  |||||| |  |||| |||||||||||||||| ||||| ||||||| ||| |||    
T  26125628 ttatgtttggatacactaatgtaaaaatgattcttatgagttgataatgtttggacggtttaaatcaaaattgattttgaatgtgtaatgacgaaaatat 26125529  T
Q  130 ccttataatt 139  Q
    | || |||||    
T  26125528 ctttttaatt 26125519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 45147327 - 45147380
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttt 107  Q
    ||||||||||||| ||||||| |||||||||||  |||||||||||||||||||    
T  45147327 aagtgattcttataagttgatattgtttgaataacttgaatcaaaattgatttt 45147380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 34342930 - 34343002
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaatta 128  Q
    ||||||||||||| ||| ||||||||||| ||| |||||||||||||||||||| || || ||||||| ||||||    
T  34342930 aagtgattcttat-agtggatgttgtttggataatttgaatcaaaattgattttgaa-gtgtaatgaccaaatta 34343002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 11126572 - 11126499
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattga 103  Q
    ||||||||||||||||||    | |||||||| | |||||||  ||||||||| ||||||||||||||||||||    
T  11126572 ttatgtttggatacacttataaataagtgattttcatgagtttgtgttgtttggatagtttgaatcaaaattga 11126499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 24297687 - 24297732
Alignment:
Q  73 atgttgtttgaatagtttgaatcaaaattgattttaaatgtctaat 118  Q
    |||||||||| ||||||||||||||||||||||||| |||| ||||    
T  24297687 atgttgtttggatagtttgaatcaaaattgattttacatgtataat 24297732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 42143417 - 42143486
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaa 99  Q
    ||||||||||||| ||||   || |||||||||||||||||||| |||||||| ||| |||||| |||||    
T  42143417 ttatgtttggataaacttatttaaaagtgattcttatgagttgacgttgtttggataatttgaaacaaaa 42143486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 15206772 - 15206670
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttact-agaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttta 108  Q
    |||| ||||||||||| |||| ||||||||||||| || ||| ||||||||||||||  | || |||||||||| ||||||||   |||||||||||||     
T  15206772 tgagttgaatgtgaattgatttatgtttggataca-ttgacttagaagtgattcttaaaaattcatgttgtttggatagtttggcccaaaattgattttg 15206674  T
Q  109 aatg 112  Q
    ||||    
T  15206673 aatg 15206670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 108
Target Start/End: Complemental strand, 41408203 - 41408168
Alignment:
Q  73 atgttgtttgaatagtttgaatcaaaattgatttta 108  Q
    |||||||||||||||||| |||||||||||||||||    
T  41408203 atgttgtttgaatagtttaaatcaaaattgatttta 41408168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 112
Target Start/End: Complemental strand, 26243103 - 26243065
Alignment:
Q  74 tgttgtttgaatagtttgaatcaaaattgattttaaatg 112  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  26243103 tgttgtttggatagtttgaatcaaaattgattttgaatg 26243065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 31246392 - 31246450
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatg 112  Q
    ||||||||||||| | || |||||||||| |||  ||| ||||||||||||||||||||    
T  31246392 aagtgattcttataaattcatgttgtttggataacttggatcaaaattgattttaaatg 31246450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 37458403 - 37458449
Alignment:
Q  77 tgtttgaatagtttgaatcaaaattgattttaaatgtctaatgacta 123  Q
    |||||| |||||||||||||||||||||||| ||||| |||| ||||    
T  37458403 tgtttggatagtttgaatcaaaattgattttgaatgtataattacta 37458449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 25698153 - 25698190
Alignment:
Q  168 ataattatttaaacttatctaaaatcataaatggattt 205  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  25698153 ataattatttgaacttatctaaaatcataaatgaattt 25698190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 3097407 - 3097475
Alignment:
Q  168 ataattatttaaacttatctaaaatcataaatggattttgatttgttcacaaatttatttaaaaataat 236  Q
    |||||||||| ||| |||||||||||||||||| || || ||| ||||| ||| | |||| ||||||||    
T  3097407 ataattatttcaacctatctaaaatcataaatgaatatttattggttcataaaatcattttaaaataat 3097475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 42600558 - 42600490
Alignment:
Q  57 tgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaa 125  Q
    |||||||||| | || ||||||||||||||  ||| ||||||||||||||| ||||  |||| ||||||    
T  42600558 tgattcttataaattcatgttgtttgaataacttggatcaaaattgattttgaatgcataattactaaa 42600490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 14821232 - 14820993
Alignment:
Q  18 aatgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaa 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||    
T  14821232 aatgtgaattgattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttggatattttgaatcaaaattgattttgaatgtctaa 14821133  T
Q  118 tgactaaattatccttataattaaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatttgttcac 217  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14821132 tgactaaattatccttataattaaaactaaatatttcattcttaattaaaataattatttaaacttatctaaaatcataaatggattttgattggttcac 14821033  T
Q  218 aaatttatttaaaaataatttcatattataagagtttttt 257  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  14821032 aaatttatttaaaaataatttcatattataagagtttttt 14820993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 272 - 414
Target Start/End: Complemental strand, 14820948 - 14820809
Alignment:
Q  272 atcaattgagttatttttaataactccctcacgtctcccactcccccttgatcttcatttctccataagccttcacttctacccactacccatttccatc 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| |||| |||| | ||||||||||||||| |||||||||||    
T  14820948 atcaattgagttatttttaataactccctcacgtctcccactccccctt---cttcatttttccagaagcttccacttctacccactatccatttccatc 14820852  T
Q  372 tttttctccaactctcaatactctacattttccttttccatct 414  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  14820851 tttttctccatctctcaatactctacattttccttttccatct 14820809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 5916273 - 5916401
Alignment:
Q  11 tgagatgaatgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaa 110  Q
    |||| ||||||||||| |||||||||||||||||||||| || ||||||||| | ||||||||||||||||| |||||||||||||||||||||||| ||    
T  5916273 tgagttgaatgtgaattgattatgtttggatacactttattaaaagtgattcatgtgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 5916372  T
Q  111 tgtctaatgactaaattatccttataatt 139  Q
    ||| ||||||||||| ||||||| |||||    
T  5916373 tgtgtaatgactaaactatccttttaatt 5916401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 36312353 - 36312225
Alignment:
Q  11 tgagatgaatgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaa 110  Q
    |||| ||||||||||| |||||||||||||||||||||| || ||||||||| | ||||||||||||||||| |||||||||||||||||||||||| ||    
T  36312353 tgagttgaatgtgaattgattatgtttggatacactttattaaaagtgattcatgtgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 36312254  T
Q  111 tgtctaatgactaaattatccttataatt 139  Q
    ||| ||||||||||| ||||||| |||||    
T  36312253 tgtgtaatgactaaactatccttttaatt 36312225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 8170389 - 8170262
Alignment:
Q  11 tgagatgaatgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaa 110  Q
    |||| ||||||| ||| |||||||||||||||||| |||  ||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||    
T  8170389 tgagttgaatgtaaattgattatgtttggatacacgttaacagatgtgattcttatgagttgatgttgtttggatagtttgaattaaaattgattttgaa 8170290  T
Q  111 tgtctaatgactaaattatccttataat 138  Q
    ||| ||||||||||||||||||| ||||    
T  8170289 tgtataatgactaaattatccttctaat 8170262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 7472713 - 7472896
Alignment:
Q  19 atgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaat 118  Q
    |||||||| ||||||||||||||||||||   || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||  |||    
T  7472713 atgtgaattgattatgtttggatacacttatttaaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgtaaaat 7472812  T
Q  119 gactaaattatccttataattaaaactaaa---tatttcattctgaattaaaataattatttaaacttatctaaaatcataaat 199  Q
    ||| ||||||||||| |||||  || ||||    || ||||| | | || | |||||||||| ||||||||||| |||||||||    
T  7472813 gaccaaattatccttgtaattgtaattaaaactaatatcattttcattttagataattattttaacttatctaatatcataaat 7472896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 28261330 - 28261248
Alignment:
Q  51 tagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatcctt 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| || ||||||||    
T  28261330 tagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattaattttaaatgtataatgaccaacttatcctt 28261248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 106
Target Start/End: Original strand, 1945070 - 1945166
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattt 106  Q
    |||| ||||||||||| |||| |||||||||||||||||| || ||||||||| | || |||||||||||||| |||||||||||||||||||||||    
T  1945070 tgagttgaatgtgaattgatttatgtttggatacactttattaaaagtgattcatgtgggttgatgttgtttggatagtttgaatcaaaattgattt 1945166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 9988552 - 9988652
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    ||||||||||||||||||   || ||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| ||||| ||||||| ||| |||    
T  9988552 ttatgtttggatacacttatttaaaagtgattcatatgagttgatgttgtttggatagtttgaatgaaaattgattttgaatgtgtaatgaccaaactat 9988651  T
Q  130 c 130  Q
    |    
T  9988652 c 9988652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 2213583 - 2213480
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| |||||||||||||||  | || |||||||| |||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  2213583 tgagttgaatgtgaattgatttatgtttggatacactcaattaaaagtgatttttattagttgatattgtttggatagtttgaatcaaaattgattttaa 2213484  T
Q  110 atgt 113  Q
    ||||    
T  2213483 atgt 2213480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 28127318 - 28127421
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| |||||||||||||||  | || |||||||| |||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  28127318 tgagttgaatgtgaattgatttatgtttggatacactcaattaaaagtgatttttattagttgatattgtttggatagtttgaatcaaaattgattttaa 28127417  T
Q  110 atgt 113  Q
    ||||    
T  28127418 atgt 28127421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 39141512 - 39141597
Alignment:
Q  22 tgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttt 107  Q
    ||||| |||||||||||||||||||    || || |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39141512 tgaattgattatgtttggatacactcatttaaaaatgattcttatgagttgatgttgtttggatagtttgaatcaaaattgatttt 39141597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 51 - 139
Target Start/End: Original strand, 25940313 - 25940401
Alignment:
Q  51 tagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatt 139  Q
    ||||||||||| ||||||| |||||||||||| | |||||||||||||||||||||| ||| | ||||||| ||||||||||| |||||    
T  25940313 tagaagtgattattatgagatgatgttgtttggacagtttgaatcaaaattgattttgaatatataatgaccaaattatccttctaatt 25940401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 36548230 - 36548075
Alignment:
Q  57 tgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatcc------ttataattaaaactaaata 150  Q
    ||||| ||||| |||||||||||||| ||| ||| ||| |||||||||||| || ||  ||||||||||||||||      ||||| |||||||||||||    
T  36548230 tgatttttatgggttgatgttgtttggataatttaaattaaaattgattttgaacgtacaatgactaaattatccttttaattatatttaaaactaaata 36548131  T
Q  151 tttcattctgaattaaaataattatttaaacttatctaaaatcataaatggatttt 206  Q
    | | ||||  | || | |||||||||| |||||||||||||||||||||| |||||    
T  36548130 tcttattcatatttcagataattattttaacttatctaaaatcataaatgcatttt 36548075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 23358321 - 23358232
Alignment:
Q  24 aatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgt 113  Q
    ||||| ||||||||||||||||||   || |||||||| | ||||||| |||||||||| |||||||||||||||||||||||| |||||    
T  23358321 aatagtttatgtttggatacacttgtttaaaagtgattgtgatgagttaatgttgtttggatagtttgaatcaaaattgattttgaatgt 23358232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 28641675 - 28641590
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatt 139  Q
    |||||||| |||| ||||||||||||||| |||  |||||| |||||||||||||||||| ||||||| ||||||||||| |||||    
T  28641675 aagtgattattataagttgatgttgtttggatatgttgaattaaaattgattttaaatgtgtaatgaccaaattatccttttaatt 28641590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 32502052 - 32501934
Alignment:
Q  21 gtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatga 120  Q
    |||||| ||||||||||||||||| |  | || |||| ||| ||| |||||||| |||||||  ||||||||||||||||||||||||||||  ||||||    
T  32502052 gtgaattgattatgtttggatacattcaattaaaagtaatttttacgagttgatattgtttgggtagtttgaatcaaaattgattttaaatgggtaatga 32501953  T
Q  121 ctaaattatccttataatt 139  Q
    | || ||| |||| |||||    
T  32501952 ccaacttacccttttaatt 32501934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 2234959 - 2234901
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgt 113  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||    
T  2234959 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattaattttaaatgt 2234901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 30 - 133
Target Start/End: Original strand, 26207980 - 26208083
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||| ||||||||| | || || |||||||||  ||||||||||||||| ||  | ||||||||||||||||||||||||  |||||| ||| |||    
T  26207980 ttatgttttgatacacttaattaaaattgattcttacaagttgatgttgtttggattatatgaatcaaaattgattttaaatgtacaatgaccaaactat 26208079  T
Q  130 cctt 133  Q
    ||||    
T  26208080 cctt 26208083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 44619112 - 44619195
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgt 113  Q
    ||||||||||||||||||   || || ||||| |||||||||||||||||||| ||||||||||| ||||| |||||| |||||    
T  44619112 ttatgtttggatacacttgtttaaaaatgattattatgagttgatgttgtttggatagtttgaattaaaatcgattttgaatgt 44619195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 31562728 - 31562823
Alignment:
Q  21 gtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaat 118  Q
    |||||| ||||||||||||| || | ||  || |||||||||||||||||| || ||||||| ||| |||||||||||||||||||| ||||| ||||    
T  31562728 gtgaattgattatgtttggacactcgtt--taaaagtgattcttatgagtttatattgtttggataatttgaatcaaaattgattttgaatgtgtaat 31562823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 42516053 - 42516135
Alignment:
Q  57 tgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatt 139  Q
    ||||||||  |||||||||||||||| ||||||||||| |||||||||||| ||||| |||| || |||||||| || |||||    
T  42516053 tgattctttcgagttgatgttgtttggatagtttgaattaaaattgattttgaatgtataataaccaaattatctttttaatt 42516135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 7295399 - 7295506
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||||| |   || |||||||| | |||||||||||||||||| ||||||| | ||||| |||||||| ||| | |||||||  ||||||    
T  7295399 ttatgtttggatacacata--taaaagtgattatcatgagttgatgttgtttggatagtttaagtcaaacttgattttgaatatataatgaccgaattat 7295496  T
Q  130 ccttataatt 139  Q
    |||| |||||    
T  7295497 ccttttaatt 7295506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 7296212 - 7296109
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||||||    || |||||||| | |||| |||||||| |||| ||||||| | |||||||||||||| ||| | |||||||  ||||||    
T  7296212 ttatgtttggatacactcatataaaagtgattatcatgacttgatgttatttggatagtttaagtcaaaattgattttgaatatataatgaccgaattat 7296113  T
Q  130 cctt 133  Q
    ||||    
T  7296112 cctt 7296109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 31224737 - 31224690
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgtt 77  Q
    ||||||||||||| | ||||||| ||||||||||||||||||||||||    
T  31224737 ttatgtttggatatattttactaaaagtgattcttatgagttgatgtt 31224690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 42089607 - 42089671
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaat 118  Q
    ||||||||||||||||||||||||||||| |||  | ||||||||| || ||||| |||| ||||    
T  42089607 aagtgattcttatgagttgatgttgtttggataaatcgaatcaaaactgcttttagatgtataat 42089671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 107
Target Start/End: Original strand, 3602509 - 3602587
Alignment:
Q  29 attatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttt 107  Q
    |||||||||||||| | |  | || |||||||| |||| | || |||||||||| ||||||||||| ||||||||||||    
T  3602509 attatgtttggatatattaaaataaaagtgatttttattaattcatgttgtttggatagtttgaattaaaattgatttt 3602587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 39106764 - 39106822
Alignment:
Q  75 gttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatcctt 133  Q
    |||||||  ||| |||||||||||||||||||||||| |  |||||| |||||||||||    
T  39106764 gttgtttagataatttgaatcaaaattgattttaaatatacaatgaccaaattatcctt 39106822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 2212814 - 2212769
Alignment:
Q  94 tcaaaattgattttaaatgtctaatgactaaattatccttataatt 139  Q
    ||||||||||||||||||||  |||||| ||||||||||| |||||    
T  2212814 tcaaaattgattttaaatgtgcaatgaccaaattatccttttaatt 2212769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 3552920 - 3552985
Alignment:
Q  53 gaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaat 118  Q
    ||||| |||||||| | || || ||||||| ||| ||||||||||||||||| |||||||| ||||    
T  3552920 gaagtaattcttatcatttcatattgtttggataatttgaatcaaaattgatcttaaatgtgtaat 3552985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 3853914 - 3853869
Alignment:
Q  73 atgttgtttgaatagtttgaatcaaaattgattttaaatgtctaat 118  Q
    |||||||||| ||||||||||||||||||| |||| ||||| ||||    
T  3853914 atgttgtttggatagtttgaatcaaaattgcttttgaatgtgtaat 3853869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 16467119 - 16467066
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttt 107  Q
    |||||||||||||| |||||||| ||||| |||||||  ||||||||| |||||    
T  16467119 aagtgattcttatgggttgatgtagtttggatagtttagatcaaaattaatttt 16467066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 25747932 - 25748009
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttt 107  Q
    ||||||||||||||| |   ||| || |||||||||| | || ||||||||||  |||||||||||||||||| ||||    
T  25747932 ttatgtttggatacaataacctaaaattgattcttatcaatttatgttgtttgggtagtttgaatcaaaattgctttt 25748009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 6464692 - 6464453
Alignment:
Q  18 aatgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaa 117  Q
    ||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  6464692 aatgtgaattgattatgtttttatacactttactagaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgtctaa 6464593  T
Q  118 tgactaaattatccttataattaaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatttgttcac 217  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6464592 tgactaaattatccttataattaaaactaaatatttcattcttaattaaaataattatttaaacttatctaaaatcataaatggattttgattggttcac 6464493  T
Q  218 aaatttatttaaaaataatttcatattataagagtttttt 257  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6464492 aaatttatttaaaaataatttcatattataagagtttttt 6464453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 45710132 - 45709915
Alignment:
Q  19 atgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaat 118  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  45710132 atgtgaattgattatgtttgaatacactttactagaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgtctaat 45710033  T
Q  119 gactaaattatccttataattaaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatttgttcaca 218  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  45710032 gactaaattatccttataattaaaactaaatatttcaatcttaattaaaataattatttaaatttatctaaaatcataaatggattttgattggttcaca 45709933  T
Q  219 aatttatttaaaaataat 236  Q
    |||| |||||||||||||    
T  45709932 aattgatttaaaaataat 45709915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 9 - 257
Target Start/End: Complemental strand, 40821918 - 40821671
Alignment:
Q  9 aatgagatgaatgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttta 108  Q
    |||||| ||||||||||| ||||||||| ||||||||||||  | |||||||||||||  ||||||||| |||| ||| |||||||||||||||| |||     
T  40821918 aatgagttgaatgtgaattgattatgttaggatacactttaacataagtgattcttatttgttgatgttatttggataatttgaatcaaaattgagtttg 40821819  T
Q  109 aatgtctaatgactaaattatccttataattaaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttga 208  Q
    |||||  |||||||||||||||||| |||||||||||||||||  |||| | | ||||||||||||||| |||||||||||||| ||||||| ||||| |    
T  40821818 aatgtgcaatgactaaattatccttttaattaaaactaaatatcccatttttagttaaaataattattt-aacttatctaaaattataaatgaattttta 40821720  T
Q  209 tttgttcacaaatttatttaaaaataatttcatattataagagtttttt 257  Q
    || ||||||||||||||||||||||||||||| ||||||||||||||||    
T  40821719 ttggttcacaaatttatttaaaaataatttcagattataagagtttttt 40821671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 271 - 414
Target Start/End: Complemental strand, 45709644 - 45709502
Alignment:
Q  271 gatcaattgagttatttttaataactccctcacgtctccc--actcccccttgatcttcatttctccataagccttcacttctacccactacccatttcc 368  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| |||||   |||||||||||||||||| | ||||||||||||||||||||||||    
T  45709644 gatcaattgagttatttttaataactccctcacgtctcccccactctccctt---cttcatttctccataagcttccacttctacccactacccatttcc 45709548  T
Q  369 atctttttctccaactctcaatactctacattttccttttccatct 414  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  45709547 atctttttctccacctctcaatactctacattttccttttccatct 45709502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 50977394 - 50977626
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||| ||| | || |||||||| |||||||| ||| ||||||| ||||||||||| |||||||||||| ||||| ||||||||||||||     
T  50977394 ttatgtttggatacgctt-attacaagtgatttttatgagtagatattgtttggatagtttgaataaaaattgattttgaatgtgtaatgactaaattac 50977492  T
Q  130 ccttataa------ttaaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatttgttcacaaattt 223  Q
    |||| |||      |||||| ||||||| ||||||| |||| | ||||| |||| || ||||||||||||||||||||||||| ||| ||||||||||||    
T  50977493 ccttttaactgtgtttaaaattaaatatctcattcttaatttagataatcatttgaatttatctaaaatcataaatggatttttattggttcacaaattt 50977592  T
Q  224 atttaaaaataatttcatattataagagtttttt 257  Q
    |||| |||||||| |||  |||| ||||| ||||    
T  50977593 attttaaaataatatcagtttatgagagtctttt 50977626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 25230098 - 25229970
Alignment:
Q  11 tgagatgaatgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaa 110  Q
    |||| ||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||| |     
T  25230098 tgagttgaatgtgaattgattatgtttggatacactttaatagaagtgattcttattagttgatgttgtttggatagtttgaatgaaaattgattttgag 25229999  T
Q  111 tgtctaatgactaaattatccttataatt 139  Q
    ||| ||||||| ||||||||||| |||||    
T  25229998 tgtgtaatgaccaaattatccttttaatt 25229970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 271 - 414
Target Start/End: Complemental strand, 6464413 - 6464272
Alignment:
Q  271 gatcaattgagttatttttaataactccctcacgtctcccactcccccttgatcttcatttctccataagccttcacttctacccactacccatttccat 370  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||| |  ||||||| |||||| |||| | || |||||||||||||||||||||||    
T  6464413 gatcaattgagttatttttaataactccctcacgtatctcactcccccct--tcttcatatctccaaaagcttccatttctacccactacccatttccat 6464316  T
Q  371 ctttttctccaactctcaatactctacattttccttttccatct 414  Q
    ||||||||||| | ||| ||||||||||| |||| |||||||||    
T  6464315 ctttttctccaccactcgatactctacatcttccatttccatct 6464272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 10470681 - 10470554
Alignment:
Q  11 tgagatgaatgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaa 110  Q
    |||| ||||||| ||| |||||||||||||||||| |||  ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||    
T  10470681 tgagttgaatgtaaattgattatgtttggatacacgttaacagaagtgattcttatgagttgatgttgtttggatagtttgaattaaaattgattttgaa 10470582  T
Q  111 tgtctaatgactaaattatccttataat 138  Q
    ||| || |||||||||||||||| ||||    
T  10470581 tgtatagtgactaaattatccttctaat 10470554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 54 - 257
Target Start/End: Complemental strand, 13056046 - 13055837
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataa------ttaaaactaa 147  Q
    |||||||| |||||||||||| ||||||| ||||||||||| |||||||||||| ||||  ||||||| |||||| |||| |||      |||||| |||    
T  13056046 aagtgatttttatgagttgatattgtttggatagtttgaataaaaattgattttgaatgcgtaatgacgaaattacccttttaactgtgtttaaaattaa 13055947  T
Q  148 atatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatttgttcacaaatttatttaaaaataatttcatattata 247  Q
    |||| ||||||| |||| | ||||| |||| || ||||||||||||||||||||||||| ||| |||||||||||||||| |||| ||| |||  ||||     
T  13055946 atatctcattcttaatttagataatcatttgaatttatctaaaatcataaatggatttttattggttcacaaatttattttaaaacaatgtcagtttatg 13055847  T
Q  248 agagtttttt 257  Q
    ||||| ||||    
T  13055846 agagtctttt 13055837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 31223446 - 31223343
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||| ||||||| ||| |||    
T  31223446 ttatgtttggatacactttaatagaagtgattcttatgagttgatgttgtttggatagtttgaattaaaattgattttgaatgtgtaatgaccaaactat 31223347  T
Q  130 cctt 133  Q
    ||||    
T  31223346 cctt 31223343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 20800311 - 20800440
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| |||||||||||||||||| || ||||||||| | || |||||||||||||| |||||||||||||| ||||||||| |    
T  20800311 tgagttgaatgtgaattgatttatgtttggatacactttattaaaagtgattcatgtgggttgatgttgtttggatagtttgaatcaatattgattttga 20800410  T
Q  110 atgtctaatgactaaattatccttataatt 139  Q
    |||| ||||||||||||||||||| |||||    
T  20800411 atgtataatgactaaattatccttttaatt 20800440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 35569236 - 35569365
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| |||||||||||||||||| || ||||||||| | || |||||||||||||| |||||||||||||||||||||||| |    
T  35569236 tgagttgaatgtgaattgatttatgtttggatacactttattaaaagtgattcatgtgggttgatgttgtttggatagtttgaatcaaaattgattttga 35569335  T
Q  110 atgtctaatgactaaattatccttataatt 139  Q
    |||| ||||||||||| |||| || |||||    
T  35569336 atgtataatgactaaactatcattttaatt 35569365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 1199919 - 1199799
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| |||||||||||||||||| |||||||||||||| ||  ||||||||||||| |||||||||||||||||||||||| |    
T  1199919 tgagttgaatgtgaattgatttatgtttggatacactttattagaagtgattcttgtggattgatgttgtttggatagtttgaatcaaaattgattttga 1199820  T
Q  110 atgtctaatgactaaattatc 130  Q
    | || ||||||||||| ||||    
T  1199819 acgtgtaatgactaaactatc 1199799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 4369880 - 4369965
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatt 139  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||| ||||||||||| |||||    
T  4369880 aagtgattcttatgagttgatgttgtttggataggttgaatcaaaattgattttaaatgtgtaatgaccaaattatccttttaatt 4369965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 12468284 - 12468166
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||| ||||||||||||||  || |||||||| |||||||||||| ||||||| |||||||||||||||||||||||| |||||  |||||| |||||||    
T  12468284 ttatatttggatacacttttttaaaagtgatttttatgagttgat-ttgtttggatagtttgaatcaaaattgattttgaatgtacaatgaccaaattat 12468186  T
Q  130 ccttataattaaaactaaat 149  Q
    |||| |||||||||| ||||    
T  12468185 ccttttaattaaaaccaaat 12468166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 43728920 - 43729034
Alignment:
Q  19 atgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaat 118  Q
    |||||||| ||||||||||||||| ||||   || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |  |||    
T  43728920 atgtgaattgattatgtttggataaacttatttaaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatattaaat 43729019  T
Q  119 gactaaattatcctt 133  Q
    ||| |||||| ||||    
T  43729020 gaccaaattaccctt 43729034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 133
Target Start/End: Complemental strand, 48511000 - 48510877
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| ||||||||||||||||   || ||||||||||||||| ||||||||||||||||||| || |||||||||||||||||    
T  48511000 tgagttgaatgtgaattgatttatgtttggatacacttgcttaaaagtgattcttatgaattgatgttgtttgaatagtatgtatcaaaattgattttaa 48510901  T
Q  110 atgtctaatgactaaattatcctt 133  Q
     ||| ||||||  ||| |||||||    
T  48510900 gtgtgtaatgatcaaactatcctt 48510877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 6166190 - 6166073
Alignment:
Q  22 tgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgac 121  Q
    ||||| |||||||||||||||||||    || |||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||  |||||||    
T  6166190 tgaattgattatgtttggatacactcatttaaaagtgattcttaggagttgatgttgtttgggtagtttgaatcaaaattgattttaaatgggtaatgac 6166091  T
Q  122 taaattatccttataatt 139  Q
     || ||| |||| |||||    
T  6166090 caacttacccttttaatt 6166073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 7826432 - 7826517
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatt 139  Q
    ||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||| ||||||| || |||||||| |||||    
T  7826432 aagtgattcttatgaattgatgttgtttggataggttgaatcaaaattgattttaaatgtgtaatgaccaagttatccttttaatt 7826517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 42850273 - 42850382
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    ||||||||||||||||||   || ||||||||||||||||||||||||||||| ||| |||  ||||||||||||||| ||||| || |||| |||||||    
T  42850273 ttatgtttggatacacttccttaaaagtgattcttatgagttgatgttgtttggatattttacatcaaaattgattttgaatgtgtattgaccaaattat 42850372  T
Q  130 ccttataatt 139  Q
    |||| |||||    
T  42850373 ccttttaatt 42850382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 40229524 - 40229632
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||||||||  || | ||||||||| ||||||||||||||||| ||| |||||||||||||||||||| || || ||||||| ||| |||    
T  40229524 ttatgtttggatacactttcttacaggtgattcttctgagttgatgttgtttggataatttgaatcaaaattgattttgaacgtgtaatgaccaaactat 40229623  T
Q  130 ccttataat 138  Q
    |||| ||||    
T  40229624 ccttttaat 40229632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 11561806 - 11561709
Alignment:
Q  139 taaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatttgttcacaaatttatttaaaaataat 236  Q
    ||||||||||||| || |||| | || | |||||||||||||||||||||||||||||| |||||||| |||  ||||||||||||||| ||||||||    
T  11561806 taaaactaaatatctctttcttattttagataattatttaaacttatctaaaatcataattggatttttattgcttcacaaatttattttaaaataat 11561709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 5410688 - 5410603
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatt 139  Q
    ||||||||||||||| ||||||||||||| ||||||||||||| |||||||||| ||| | ||||||| ||| ||||||| |||||    
T  5410688 aagtgattcttatgacttgatgttgtttggatagtttgaatcataattgattttgaatatgtaatgaccaaactatccttttaatt 5410603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 35536153 - 35535973
Alignment:
Q  21 gtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatga 120  Q
    |||||| | |||||||| ||||||||    || ||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||  |  |||||    
T  35536153 gtgaattggttatgtttagatacactcgtttaaaagtgattcttatgagttgatgttgtttggataatttgaatcaaaattgattttgaacattaaatga 35536054  T
Q  121 ctaaattatccttataat----taaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaa 198  Q
    | |||||| |||| ||||    |  |||||||| || |||||| | || | |||||||||| || |||||||||||||||||    
T  35536053 ccaaattacccttttaattgtatttaactaaat-ttccattctcattttagataattatttcaaattatctaaaatcataaa 35535973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 11023374 - 11023492
Alignment:
Q  21 gtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatga 120  Q
    |||||| ||||||||||||||||| |  | || |||| ||| ||| |||||||| |||||||  ||||||||||||||||||||||||||||  ||||||    
T  11023374 gtgaattgattatgtttggatacattcaattaaaagtaatttttacgagttgatattgtttgggtagtttgaatcaaaattgattttaaatgggtaatga 11023473  T
Q  121 ctaaattatccttataatt 139  Q
    | || ||| |||| |||||    
T  11023474 ccaacttacccttttaatt 11023492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 12247493 - 12247415
Alignment:
Q  29 attatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttt 107  Q
    |||||||||||||||||||   || |||||||| |||||||||||||||||||| | | ||||||||||||||||||||    
T  12247493 attatgtttggatacacttgtttaaaagtgatttttatgagttgatgttgtttggagaatttgaatcaaaattgatttt 12247415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 31933772 - 31933690
Alignment:
Q  57 tgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatt 139  Q
    |||||||||||||||||||||||||| ||| |||  ||||||||||||||| ||||| || |||| ||||||||||| |||||    
T  31933772 tgattcttatgagttgatgttgtttggatattttacatcaaaattgattttgaatgtgtattgaccaaattatccttttaatt 31933690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 36205239 - 36205154
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatt 139  Q
    |||||||||||| ||||  |||||| ||| |||||||||||||||||||||||| ||||| ||||||| |||||| |||| |||||    
T  36205239 aagtgattcttacgagtgaatgttgcttggatagtttgaatcaaaattgattttgaatgtttaatgaccaaattaaccttttaatt 36205154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 140
Target Start/End: Original strand, 11051395 - 11051474
Alignment:
Q  60 ttcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatta 140  Q
    |||||| ||||| |||||||||| ||||||||||| |||||||||||| ||||| ||||||| ||||||||||| ||||||    
T  11051395 ttcttaagagtt-atgttgtttggatagtttgaataaaaattgattttgaatgtgtaatgaccaaattatccttttaatta 11051474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 13931706 - 13931605
Alignment:
Q  19 atgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaat 118  Q
    |||||||| ||||||||||||||| |||    || |  |||||||||  ||||||||||||||| |||||||||||||||||||||||| ||| | ||||    
T  13931706 atgtgaattgattatgtttggatatactcacttaaacatgattcttacaagttgatgttgtttggatagtttgaatcaaaattgattttgaatatgtaat 13931607  T
Q  119 ga 120  Q
    ||    
T  13931606 ga 13931605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 25061298 - 25061218
Alignment:
Q  30 ttatgtttggatacactttac-tagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaa 110  Q
    |||||||||||||| ||| || || ||||||||||||| | |||||| |||||| ||| |||||||||||||||||||||||    
T  25061298 ttatgtttggatac-cttaacataaaagtgattcttatcaattgatgatgtttggataatttgaatcaaaattgattttaaa 25061218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 9447616 - 9447533
Alignment:
Q  19 atgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattg 102  Q
    |||||||| |||||||||| |||| |||    || |||||||||||  |||||||||||||||| ||||||||||| |||||||    
T  9447616 atgtgaatggattatgtttagatatactcatttaaaagtgattctttcgagttgatgttgtttggatagtttgaattaaaattg 9447533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 257
Target Start/End: Complemental strand, 4487464 - 4487354
Alignment:
Q  147 aatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatttgttcacaaatttatttaaaaataatttcatattat 246  Q
    ||||| ||||||| | || | |||||||||| |||||||||||||||||||||| || || | | ||||||||| | |||| |||||||| | |  ||||    
T  4487464 aatatctcattctcattttagataattatttcaacttatctaaaatcataaatgaatattcactggttcacaaaataattttaaaataatattaatttat 4487365  T
Q  247 aagagtttttt 257  Q
    ||||| |||||    
T  4487364 aagagcttttt 4487354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 236
Target Start/End: Complemental strand, 25229924 - 25229859
Alignment:
Q  171 attatttaaacttatctaaaatcataaatggattttgatttgttcacaaatttatttaaaaataat 236  Q
    ||||||| ||||||| ||||||||||||| | |||| ||| ||||||||||| |||| ||||||||    
T  25229924 attatttcaacttatgtaaaatcataaataggtttttattggttcacaaattcattttaaaataat 25229859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 47123455 - 47123370
Alignment:
Q  33 tgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaat 118  Q
    |||||||||||||||   || ||||||||||||| ||||| ||||||||| |||  || ||||||||||| ||||| |||| ||||    
T  47123455 tgtttggatacacttcgttaaaagtgattcttataagttggtgttgtttggatacattaaatcaaaattgcttttagatgtataat 47123370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 50406175 - 50406114
Alignment:
Q  57 tgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaat 118  Q
    |||||||||| ||||| ||||||||| |||  |||||||||||||| |||||||||| ||||    
T  50406175 tgattcttataagttgttgttgtttggatacattgaatcaaaattgtttttaaatgtataat 50406114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 15884274 - 15884216
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatg 112  Q
    |||||||| |||| | || |||||||||| |||||||| ||||||||||||||| ||||    
T  15884274 aagtgatttttataaattcatgttgtttggatagtttggatcaaaattgattttgaatg 15884216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 43729072 - 43729109
Alignment:
Q  168 ataattatttaaacttatctaaaatcataaatggattt 205  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  43729072 ataattatttgaacttatctaaaatcataaatgaattt 43729109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 9447488 - 9447400
Alignment:
Q  168 ataattatttaaacttatctaaaatcataaatggattttgatttgttcacaaatttatttaaaaataatttcatattataagagttttt 256  Q
    |||||||||| ||||||||||| |||||||||  ||||| |||  |||| ||||| |||| ||||  |||| |  ||||||||||||||    
T  9447488 ataattattttaacttatctaagatcataaattcatttttattgattcataaattcattttaaaaatattttagtttataagagttttt 9447400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 46033210 - 46033262
Alignment:
Q  73 atgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaa 125  Q
    |||||||||| |||||||  ||||||||||||||| ||||| |||| ||||||    
T  46033210 atgttgtttggatagtttttatcaaaattgattttgaatgtataattactaaa 46033262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 54153097 - 54152848
Alignment:
Q  11 tgagatgaatgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaa 110  Q
    |||| ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  54153097 tgagttgaatgtgaattgattatgtttgaatacactttactagaagtgattctcatgagttgatgttgtttgaatagtttgaatcaaaattgattttgaa 54152998  T
Q  111 tgtctaatgactaaattatccttataattaaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54152997 tgtctaatgactaaattatccttataattaaaactaaatatttcaatcttaattaaaataattatttaaacttatctaaaatcataaatggattttgatt 54152898  T
Q  211 tgttcacaaatttatttaaaaa---taatttcatattataagagtttttt 257  Q
     |||||||||||||||||||||   |||||||||||||||||||||||||    
T  54152897 ggttcacaaatttatttaaaaataataatttcatattataagagtttttt 54152848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 32238092 - 32238340
Alignment:
Q  11 tgagatgaatgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaa 110  Q
    |||| ||||||||||| | ||||||||||||||||| || |||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||| ||    
T  32238092 tgagttgaatgtgaattggttatgtttggatacactatattagaagtgattcatatgagttgatgttgtttggatagtttgaatcaaaactgattttgaa 32238191  T
Q  111 tgtctaatgactaaattatccttataattaaaa--ctaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttga 208  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32238192 tgtctaatgactaaattatccttataattaaaaaactaaatatttcattcttaattaaaataattatttaaacttatctaaaatcataaatggattttga 32238291  T
Q  209 tttgttcacaaatttatttaaaaataatttcatattataagagtttttt 257  Q
    || |||||  ||||||||||||||||| |||||||||||||||||||||    
T  32238292 ttggttcaacaatttatttaaaaataacttcatattataagagtttttt 32238340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 14072555 - 14072310
Alignment:
Q  11 tgagatgaatgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaa 110  Q
    |||| |||| || ||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| ||    
T  14072555 tgagttgaaggtaaattgattatgtttggatacactttaatagaagtgattctaatgagttgatgttgtttggatagtttgaatcaaaattgattttgaa 14072456  T
Q  111 tgtctaatgactaaattatccttataattaaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatt 210  Q
    ||| ||||||||||||||||||| ||||||||||||| ||| ||||||| | ||||||||||||||| ||| ||||||||||||||||| |||||| |||    
T  14072455 tgtgtaatgactaaattatccttttaattaaaactaactatctcattcttacttaaaataattatttgaacatatctaaaatcataaat-gatttttatt 14072357  T
Q  211 tgttcacaaatttatttaaaaataatttcatattataagagtttttt 257  Q
     ||||||||||||||||||||||||||| | |||||||| |||||||    
T  14072356 ggttcacaaatttatttaaaaataatttgagattataagtgtttttt 14072310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 271 - 414
Target Start/End: Complemental strand, 54152783 - 54152641
Alignment:
Q  271 gatcaattgagttatttttaataactccctcacgtctccc--actcccccttgatcttcatttctccataagccttcacttctacccactacccatttcc 368  Q
    |||||||| |||||||||||||||||||||||||||||||  |||| |||||   |||||||||||||||||| | ||||||||||||||| |||||| |    
T  54152783 gatcaattaagttatttttaataactccctcacgtctcccccactctccctt---cttcatttctccataagcttccacttctacccactatccattttc 54152687  T
Q  369 atctttttctccaactctcaatactctacattttccttttccatct 414  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  54152686 atctttttctccacctctcaatactctacattttccttttccatct 54152641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 30842174 - 30841953
Alignment:
Q  21 gtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatga 120  Q
    |||||| ||||||||||||||||||||   |  ||||||||||||||||||||| |  |||| |||||||||||||||||||||||| |||||  |||||    
T  30842174 gtgaattgattatgtttggatacacttgtttgaaagtgattcttatgagttgatttcatttggatagtttgaatcaaaattgattttgaatgtaaaatga 30842075  T
Q  121 ctaaattatccttataa------ttaaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatttgtt 214  Q
    | ||||||||||| |||      ||||||||||| ||  |||||| | || | ||| |||||| |||||||||||||||||||||||||||| ||| |||    
T  30842074 caaaattatccttttaattgtatttaaaactaaacatcccattcttattttagatacttatttgaacttatctaaaatcataaatggatttttattggtt 30841975  T
Q  215 cacaaatttatttaaaaataat 236  Q
    || |||||||||| ||||||||    
T  30841974 caaaaatttattttaaaataat 30841953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 271 - 414
Target Start/End: Original strand, 32238383 - 32238524
Alignment:
Q  271 gatcaattgagttatttttaataactccctcacgtctcccactcccccttgatcttcatttctccataagccttcacttctacccactacccatttccat 370  Q
    |||||| ||||||||||||||||| ||||| |||||||||||||||||||   |||||||||||||||||| | |||||||| |||||| |||||| |||    
T  32238383 gatcaaatgagttatttttaataattcccttacgtctcccactccccctt---cttcatttctccataagcttccacttctatccactatccattttcat 32238479  T
Q  371 ctttttctccaactctc-aatactctacattttccttttccatct 414  Q
    |||||| |||| ||||| |||||||||||||||||||||||||||    
T  32238480 ctttttttccacctctcaaatactctacattttccttttccatct 32238524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 21 - 236
Target Start/End: Original strand, 48407741 - 48407962
Alignment:
Q  21 gtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatga 120  Q
    |||||| ||||||||||||||||||||   |  ||||||||||||||||||||| |  |||| |||||||||||||||||||||||| |||||  |||||    
T  48407741 gtgaattgattatgtttggatacacttgtttgaaagtgattcttatgagttgatttcatttggatagtttgaatcaaaattgattttgaatgtaaaatga 48407840  T
Q  121 ctaaattatccttataa------ttaaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatttgtt 214  Q
    | ||||||||||| |||      ||||||||||| ||  |||||| | || | ||| |||||| ||||||||||||||||||| |||||||| ||| |||    
T  48407841 caaaattatccttttaattgtatttaaaactaaacatcccattcttattttagatacttatttgaacttatctaaaatcataagtggatttttattggtt 48407940  T
Q  215 cacaaatttatttaaaaataat 236  Q
    || |||||||||| | ||||||    
T  48407941 caaaaatttattttataataat 48407962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 51922973 - 51922870
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||| ||| |||    
T  51922973 ttatgtttggatacactttactaaaagtaattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgtataatgaccaaactat 51922874  T
Q  130 cctt 133  Q
    ||||    
T  51922873 cctt 51922870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 48550480 - 48550570
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatga 120  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  48550480 ttatgtttggataaactttaatagaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttaaatgtgtaatga 48550570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 16566358 - 16566229
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| |||||||||||||||||| || ||||||||| | || |||||||||||||| |||||||||||||||||||||||| |    
T  16566358 tgagttgaatgtgaattgatttatgtttggatacactttattaaaagtgattcatgtgggttgatgttgtttggatagtttgaatcaaaattgattttga 16566259  T
Q  110 atgtctaatgactaaattatccttataatt 139  Q
    |||| ||||||||||| ||||||| |||||    
T  16566258 atgtgtaatgactaaactatccttttaatt 16566229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 43781562 - 43781674
Alignment:
Q  21 gtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatga 120  Q
    |||||| ||||||||||||||||||||   || ||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||  |||||    
T  43781562 gtgaattgattatgtttggatacacttgtttaaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattaattttgaatgtaaaatga 43781661  T
Q  121 ctaaattatcctt 133  Q
    | |||||||||||    
T  43781662 ccaaattatcctt 43781674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 26651881 - 26652004
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| |||||| |||||||||||||| |||| |||||||||||| |||||| |||| |||||||||||||||||||||||| |    
T  26651881 tgagttgaatgtgaattgatttatgtttagatacactttactaaaagtaattcttatgagtcgatgttatttggatagtttgaatcaaaattgattttga 26651980  T
Q  110 atgtctaatgactaaattatcctt 133  Q
    |||| ||||||| ||| |||||||    
T  26651981 atgtataatgaccaaactatcctt 26652004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 43772176 - 43772286
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||||||||  ||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||| ||| ||||||| ||| |||    
T  43772176 ttatgtttggatacacttttttagaagtgattcttacgagttgatgttgtttggataatatgaatcaaaattgattttaagtgtgtaatgaccaaactat 43772275  T
Q  130 ccttataatta 140  Q
    |||| ||||||    
T  43772276 ccttttaatta 43772286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 54 - 236
Target Start/End: Original strand, 31520447 - 31520634
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatta-----aaactaaa 148  Q
    |||||||| ||||||||||||||| ||||  |||||||||| |||||||||||||||||| ||||||| |||| ||| || | ||||     ||| ||||    
T  31520447 aagtgatttttatgagttgatgttttttgggtagtttgaataaaaattgattttaaatgtgtaatgaccaaatcatcatttttattatatataaattaaa 31520546  T
Q  149 tatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatttgttcacaaatttatttaaaaataat 236  Q
    ||| || |||| | || | |||||||||| ||||||||||||||||||| || ||||| |||  |||||||| |||||| ||||||||    
T  31520547 tatctctttcttattttagataattatttgaacttatctaaaatcataattgaatttttattgcttcacaaacttattttaaaataat 31520634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 39636818 - 39636708
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    ||||||||||||||||||   || |||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| ||| ||| ||| |||    
T  39636818 ttatgtttggatacacttacttaaaagtgattcttacgagttgatgttgtttggatagtatgaatcaaaattgattttaaatgtgtaacgaccaaaatat 39636719  T
Q  130 ccttataatta 140  Q
    |||| ||||||    
T  39636718 ccttttaatta 39636708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 19592284 - 19592393
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    ||||||||||||||||||||||| |||||||||||| || |||| |||||||| ||||||||||| |||||||||||| |||||  |||||| |||||||    
T  19592284 ttatgtttggatacactttactaaaagtgattcttacgaattgacgttgtttggatagtttgaatgaaaattgattttgaatgtacaatgaccaaattat 19592383  T
Q  130 ccttataatt 139  Q
     ||| |||||    
T  19592384 tcttttaatt 19592393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 49136555 - 49136446
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||||||    || ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||  |||||| |||||||    
T  49136555 ttatgtttggatacactcacttaaaagtgattcttatgagttgatgttgtttgaataattttaatcaaaattgattttgaatgtacaatgaccaaattat 49136456  T
Q  130 ccttataatt 139  Q
    |||| |||||    
T  49136455 ccttttaatt 49136446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 9889411 - 9889495
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataat 138  Q
    ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||| ||||||||||||||||||| ||||    
T  9889411 aagtgattcttatgagtagatgttgtttggatagtttgaattaaaattgattttgaatgtataatgactaaattatccttttaat 9889495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 42944931 - 42945061
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| |||||| |||| ||||   || |||||||||||||| |||||||||||||| ||||| || |||||||||||||||||    
T  42944931 tgagttgaatgtgaattgatttatgtttagatatacttacttaaaagtgattcttatgtgttgatgttgtttggatagtatgtatcaaaattgattttaa 42945030  T
Q  110 atgtctaatgactaaattatccttataatta 140  Q
    |||| ||||||| ||| ||||||| ||||||    
T  42945031 atgtataatgaccaaactatccttttaatta 42945061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 4954128 - 4954213
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatt 139  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||| |||||||  |||||||||| |||||    
T  4954128 aagtgattcttatgagttgatgttgtttggataggttgaatcaaaattaattttaaatgtgtaatgacctaattatccttttaatt 4954213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 54 - 186
Target Start/End: Complemental strand, 9893720 - 9893583
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttata-----attaaaactaaa 148  Q
    ||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| ||||| |||||| |||||||||||| ||     ||||||| ||||    
T  9893720 aagtgattcttatgagttgatgttgtttggatagtttaaattaaaattgattttgaatgtataatgattaaattatccttttaatgttattaaaaataaa 9893621  T
Q  149 tatttcattctgaattaaaataattatttaaacttatc 186  Q
    ||| ||||| | | || | |||||||||| ||||||||    
T  9893620 tatctcattttcattttagataattatttgaacttatc 9893583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 46830122 - 46830231
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||||||||  || || |||||||||||||||||||||||||| ||| | |  ||||||||||||||||||||| || |||| |||||||    
T  46830122 ttatgtttggatacactttcttaaaattgattcttatgagttgatgttgtttggatattctacatcaaaattgattttaaatgtgtattgaccaaattat 46830221  T
Q  130 ccttataatt 139  Q
    |||| |||||    
T  46830222 ccttttaatt 46830231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 57 - 233
Target Start/End: Complemental strand, 15603366 - 15603184
Alignment:
Q  57 tgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatt------aaaactaaata 150  Q
    |||||||||||||||||||||||||| ||| ||| | |||||||||||||| ||||   |||||  ||||||||||| | |||      |||||||||||    
T  15603366 tgattcttatgagttgatgttgtttggataatttaagtcaaaattgattttgaatgcacaatgatcaaattatccttttgattgtttttaaaactaaata 15603267  T
Q  151 tttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatttgttcacaaatttatttaaaaat 233  Q
    | ||||| | | ||   || ||||||| |||||||||||||||||||||| ||||| ||| ||||| |||||||||| |||||    
T  15603266 tctcattatcatttttgatgattatttcaacttatctaaaatcataaatgcatttttattggttcataaatttattttaaaat 15603184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 29149340 - 29149443
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| |||||||||||||||  | || |||||||| |||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  29149340 tgagttgaatgtgaattgatttatgtttggatacactcaattaaaagtgatttttattagttgatattgtttggatagtttgaatcaaaattgattttaa 29149439  T
Q  110 atgt 113  Q
    ||||    
T  29149440 atgt 29149443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 39187782 - 39187704
Alignment:
Q  16 tgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaa 93  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||    
T  39187782 tgaatgtgaattgatttatgtttggatacactttactagaagtgattcttgttagttgatgttgtttgaataatttgaa 39187704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 30 - 203
Target Start/End: Complemental strand, 38694081 - 38693904
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||||||    || |||||||||||||| |||||| ||| ||||||| ||| |||||||||| ||||| ||||  ||||||| |||||||    
T  38694081 ttatgtttggatacactcgcttaaaagtgattcttatgggttgatcttgcttgaataatttaaatcaaaattaattttgaatg--taatgaccaaattat 38693984  T
Q  130 ccttataat------taaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggat 203  Q
     ||| ||||      |||||||||| || ||| ||| | || |||| ||||||| |||||||||||||||||||||||||    
T  38693983 acttttaattatatataaaactaaacatctcaatctcattttaaatgattatttcaacttatctaaaatcataaatggat 38693904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 28987061 - 28986963
Alignment:
Q  21 gtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatga 120  Q
    |||||| ||||||||||| |||||||  |||  |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||    
T  28987061 gtgaattgattatgtttgaatacactc-actt-aagtgatttttatgagttgatgttgtttggatagtttgaatcaaaattgattttaaatgggtaatga 28986964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 15619659 - 15619541
Alignment:
Q  19 atgtgaatagat-tatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaa 117  Q
    |||||||| ||| ||||||||||||||  |||||| ||||||||| | || |||||||||||||| |||||||||||||||| |||| || ||||| |||    
T  15619659 atgtgaattgatgtatgtttggataca--ttactataagtgattcatgtgggttgatgttgtttggatagtttgaatcaaaa-tgatcttgaatgtgtaa 15619563  T
Q  118 tgactaaattatccttataatt 139  Q
    ||||||||||||| || |||||    
T  15619562 tgactaaattatcattttaatt 15619541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 14564223 - 14564302
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatcctt 133  Q
    |||||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||| | ||||||| || ||||||||    
T  14564223 aagtgattcttatgagttaatgttgtttggatagattgaatcaaaattgattttgaatatataatgaccaacttatcctt 14564302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 131
Target Start/End: Original strand, 26426165 - 26426268
Alignment:
Q  28 gattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaatt 127  Q
    |||||||||||||||| ||| | || ||||||||||| ||||||||| ||||||| |||  ||||||||||||||||| | ||||| ||||||| | |||    
T  26426165 gattatgtttggatacgcttaattaaaagtgattcttttgagttgatattgtttggatacattgaatcaaaattgattgtgaatgtataatgaccatatt 26426264  T
Q  128 atcc 131  Q
    ||||    
T  26426265 atcc 26426268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 2175224 - 2175310
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatta 140  Q
    |||||||| | ||| |||||||||||||| ||||||||||| |||||||||||| || ||  |||||||||||||||||| ||||||    
T  2175224 aagtgattttgatgggttgatgttgtttggatagtttgaattaaaattgattttgaacgtacaatgactaaattatccttttaatta 2175310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 54735727 - 54735813
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatta 140  Q
    |||||||||||||||||||||||||||||| || ||| ||||||||||||| || ||||| ||||||| ||| ||||| | ||||||    
T  54735727 aagtgattcttatgagttgatgttgtttgagtattttaaatcaaaattgatcttgaatgtgtaatgaccaaagtatccctttaatta 54735813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 6138673 - 6138749
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattt 106  Q
    ||||||||||||||||||   || || |||||| ||||||||||||||||||| ||||||||||| |||||||||||    
T  6138673 ttatgtttggatacacttatttaaaaatgattcatatgagttgatgttgtttggatagtttgaatgaaaattgattt 6138749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 30887230 - 30887309
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatcctt 133  Q
    |||||||||||||||||| ||| |||||| || ||||| ||||||||||||||| ||||| ||||||| |||||| ||||    
T  30887230 aagtgattcttatgagttaatgatgtttggatggtttgtatcaaaattgattttgaatgtgtaatgaccaaattaacctt 30887309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 49519763 - 49519653
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    ||||||||||||||||||   || || |||||||||||| ||||| ||||||| ||||| || || |||||||||||||| ||| ||||||| ||| |||    
T  49519763 ttatgtttggatacacttgcttaaaaatgattcttatgaattgatattgtttggatagtatgtattaaaattgattttaagtgtgtaatgaccaaactat 49519664  T
Q  130 ccttataatta 140  Q
    | || ||||||    
T  49519663 cattttaatta 49519653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 6505210 - 6505125
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatt 139  Q
    |||||||| | |||| ||||||||||||| ||||||| | |||||||||||||| ||| | |||||||| |||||||||| |||||    
T  6505210 aagtgattatcatgacttgatgttgtttggatagtttaagtcaaaattgattttgaatatataatgactgaattatccttttaatt 6505125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 133
Target Start/End: Original strand, 13183103 - 13183206
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    ||||||||||||||||||   || || ||||| |||| |||||||||| |||| ||| ||| |||||||||||||||| |||||  |||||| ||| |||    
T  13183103 ttatgtttggatacacttatttaaaaatgatttttataagttgatgttttttggataatttaaatcaaaattgattttgaatgtaaaatgaccaaactat 13183202  T
Q  130 cctt 133  Q
    ||||    
T  13183203 cctt 13183206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 14076024 - 14075938
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatta 140  Q
    ||||||||||||||| |||||||||||||| || ||| |||||||||| || || ||||| ||||||| ||| ||||| | ||||||    
T  14076024 aagtgattcttatgaattgatgttgtttgagtactttaaatcaaaattaatcttgaatgtgtaatgaccaaagtatccctttaatta 14075938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 25312745 - 25312660
Alignment:
Q  33 tgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaat 118  Q
    ||||||||||||||||  || ||| ||||||||||| ||| ||||||||| |||  |||||||||||||| ||||| |||| ||||    
T  25312745 tgtttggatacactttgttaaaagcgattcttatgaattgttgttgtttggatacattgaatcaaaattgcttttagatgtataat 25312660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 55638868 - 55638949
Alignment:
Q  58 gattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatt 139  Q
    ||||||||||||||||| ||||||| ||| | |||||||||||||||||| ||| | ||||||| ||| |||| || |||||    
T  55638868 gattcttatgagttgatattgtttggataatatgaatcaaaattgattttgaatatgtaatgaccaaactatcattttaatt 55638949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 56241912 - 56241997
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatt 139  Q
    |||||||||||||||||||||  |||||  ||  ||| |||||||||||||||| ||||| ||||||| ||| ||||||| |||||    
T  56241912 aagtgattcttatgagttgataatgtttagatgatttaaatcaaaattgattttgaatgtataatgaccaaaatatccttttaatt 56241997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 48908284 - 48908231
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttt 107  Q
    |||| |||| ||| ||||||||||||||| |||| |||||||||||||||||||    
T  48908284 aagtaattcatataagttgatgttgtttggatagcttgaatcaaaattgatttt 48908231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 14054884 - 14054796
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaat 118  Q
    ||||||||||||| ||||   || |||||||| ||   ||||||||||||||||||| ||| ||| ||||||||||||  |||||||||    
T  14054884 ttatgtttggataaacttatataaaagtgattatttcaagttgatgttgtttgaatactttaaattaaaattgattttggatgtctaat 14054796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 107
Target Start/End: Complemental strand, 5025519 - 5025485
Alignment:
Q  73 atgttgtttgaatagtttgaatcaaaattgatttt 107  Q
    |||||||||| ||||||||||||||||||||||||    
T  5025519 atgttgtttggatagtttgaatcaaaattgatttt 5025485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 13167534 - 13167476
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatg 112  Q
    ||||||||||||||  || ||| |||||| |||| |||||||||||||| |||||||||    
T  13167534 aagtgattcttatgtattaatgatgtttggatagattgaatcaaaattgcttttaaatg 13167476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 47384991 - 47384950
Alignment:
Q  77 tgtttgaatagtttgaatcaaaattgattttaaatgtctaat 118  Q
    ||||| |||||||||||||||||||||||||| |||| ||||    
T  47384991 tgtttaaatagtttgaatcaaaattgattttagatgtataat 47384950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 54150556 - 54150471
Alignment:
Q  33 tgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaat 118  Q
    |||||||||||||||   || || |||||||||| ||||| ||||||||| |||  || ||||||||||| ||||| |||| ||||    
T  54150556 tgtttggatacacttcgttaaaaatgattcttataagttggtgttgtttggatacattaaatcaaaattgcttttagatgtataat 54150471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 5937397 - 5937449
Alignment:
Q  73 atgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaa 125  Q
    |||||||||||||| |||  ||||||||||||||| ||||| |||| ||||||    
T  5937397 atgttgtttgaatatttttgatcaaaattgattttgaatgtataattactaaa 5937449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 113
Target Start/End: Complemental strand, 43628713 - 43628685
Alignment:
Q  85 tagtttgaatcaaaattgattttaaatgt 113  Q
    |||||||||||||||||||||||||||||    
T  43628713 tagtttgaatcaaaattgattttaaatgt 43628685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 6208096 - 6208345
Alignment:
Q  11 tgagatgaatgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaa 110  Q
    |||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||| ||||| ||    
T  6208096 tgagttgaatgtgaattgattatgtttggatacactttactaaaagtgattcttatgagttgatgttgtttagatagtttgaatcaaaattaattttgaa 6208195  T
Q  111 tgtctaatgactaaattatccttataattaaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6208196 tgtctaatgactaaattatccttataattaaaactaaatatttcaatcttaattaaaataattatttaaacttatctaaaatcataaatgaattttgatt 6208295  T
Q  211 tgttcacaaatttatttaaa---aataatttcatattataagagtttttt 257  Q
     |||||||||||||||||||   |||||||||||||||||||||||||||    
T  6208296 ggttcacaaatttatttaaaaataataatttcatattataagagtttttt 6208345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 271 - 414
Target Start/End: Original strand, 6208394 - 6208536
Alignment:
Q  271 gatcaattgagttatttttaataactccctcacgtctccc--actcccccttgatcttcatttctccataagccttcacttctacccactacccatttcc 368  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| |||||   |||||||||||||||||| | ||||||||||||||| ||||||||    
T  6208394 gatcaattgagttatttttaataactccctcacgtctcccccactctccctt---cttcatttctccataagcttccacttctacccactatccatttcc 6208490  T
Q  369 atctttttctccaactctcaatactctacattttccttttccatct 414  Q
    ||| ||||||||| |||||||||||||||||||||||||| |||||    
T  6208491 atccttttctccacctctcaatactctacattttcctttttcatct 6208536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 16548207 - 16548078
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| |||||||||||||||||| || ||||||||| | || |||||||||||||| |||||||||||||||||||||||| |    
T  16548207 tgagttgaatgtgaattgatttatgtttggatacactttattaaaagtgattcatgtgggttgatgttgtttggatagtttgaatcaaaattgattttga 16548108  T
Q  110 atgtctaatgactaaattatccttataatt 139  Q
    |||| ||||||||||| ||||||| |||||    
T  16548107 atgtgtaatgactaaactatccttttaatt 16548078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 13739263 - 13739145
Alignment:
Q  21 gtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatga 120  Q
    |||||| ||||||||||||||||||||   || ||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||  |||||    
T  13739263 gtgaattgattatgtttggatacacttgtttaaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattaattttgaatgtaaaatga 13739164  T
Q  121 ctaaattatccttataatt 139  Q
    | ||||||||||| |||||    
T  13739163 ccaaattatccttgtaatt 13739145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 13744763 - 13744651
Alignment:
Q  21 gtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatga 120  Q
    |||||| ||||||||||||||||||||   || ||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||  |||||    
T  13744763 gtgaattgattatgtttggatacacttgtttaaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattaattttgaatgtaaaatga 13744664  T
Q  121 ctaaattatcctt 133  Q
    | |||||||||||    
T  13744663 ccaaattatcctt 13744651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 29409304 - 29409402
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaatta 128  Q
    ||||||||||||||| |||  || || |||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||| ||||||    
T  29409304 ttatgtttggatacagttttttaaaaatgattcttatgagttgatgttgtttggatagtttgaatcaaaattaattttgaatgtataatgaccaaatta 29409402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 16442383 - 16442511
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| ||||||||||||||||   || ||||||||| ||||||||||| ||||||| ||| ||||||| |||||||||||| |    
T  16442383 tgagttgaatgtgaattgatttatgtttggatacacttatttaaaagtgattcatatgagttgatattgtttggataatttgaatgaaaattgattttga 16442482  T
Q  110 atgtctaatgactaaattatccttataat 138  Q
    |||| ||||||| ||| ||||||| ||||    
T  16442483 atgtgtaatgaccaaactatccttttaat 16442511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 21455940 - 21455821
Alignment:
Q  19 atgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaat 118  Q
    ||||||||  ||| |||||| |||||||| | || |||||||||| ||||||| |||||||||| |||||||||||||||||| ||||||||||| ||||    
T  21455940 atgtgaatcaattgtgtttgtatacactt-attaaaagtgattctcatgagttaatgttgtttgcatagtttgaatcaaaattaattttaaatgtgtaat 21455842  T
Q  119 gactaaattatccttataatt 139  Q
    || ||||||||| || |||||    
T  21455841 gattaaattatctttttaatt 21455821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 17830031 - 17830143
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| |||||| | |||| |||| |||||||  ||||| || |||||||||||||| |||||||||||||||||||||||| |    
T  17830031 tgagttgaatgtgaattgatttatgtttagttacagtttattagaagtcgttcttgtgggttgatgttgtttggatagtttgaatcaaaattgattttga 17830130  T
Q  110 atgtctaatgact 122  Q
    |||| ||||||||    
T  17830131 atgtgtaatgact 17830143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 10826136 - 10826029
Alignment:
Q  33 tgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatcct 132  Q
    |||||||||| ||||   || ||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| |  |||||| ||| ||||||    
T  10826136 tgtttggatatacttatttaaaagtgattcttatgagttgattttgtttggatagtttgaatcaaaattaattttaaatatggaatgaccaaactatcct 10826037  T
Q  133 tataatta 140  Q
    | ||||||    
T  10826036 tttaatta 10826029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 205
Target Start/End: Complemental strand, 31132512 - 31132334
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||| |||||||||||||   || |||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||  |  |||||| ||||||     
T  31132512 ttatttttggatacacttatttaaaagtgattcttatgggttgatgttgtttggatagtttgaatcaaaattgattttgaactttaaatgaccaaattac 31132413  T
Q  130 ccttataat----taaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattt 205  Q
    |||| ||||    |  |||||||| ||| ||||| | || | |||||||||| |||||||||||||| |  |||||||||    
T  31132412 ccttttaattgtctttaactaaat-ttttattctcattttagataattatttcaacttatctaaaattaataatggattt 31132334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 7215623 - 7215520
Alignment:
Q  29 attatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaatta 128  Q
    |||||||||| |||||||| | || |||||||||| ||||||| |||||||||| |||  ||||||||||||| ||||||||| | |||||| |||||||    
T  7215623 attatgtttgtatacactt-attaaaagtgattctcatgagttaatgttgtttgcataaattgaatcaaaattaattttaaatatgtaatgattaaatta 7215525  T
Q  129 tcctt 133  Q
    |||||    
T  7215524 tcctt 7215520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 33899058 - 33899167
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||||||    || |||||||||||||||||| ||  |||||| || |||| |||||||||||||||| ||||| ||||||| ||| |||    
T  33899058 ttatgtttggatacactaatgtaaaagtgattcttatgagttaataatgtttggatggtttaaatcaaaattgattttgaatgtgtaatgaccaaaatat 33899157  T
Q  130 ccttataatt 139  Q
    |||| |||||    
T  33899158 ccttttaatt 33899167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 699605 - 699529
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttt 107  Q
    |||||||||||| |||||||||| |||| |||||||| |||| |||||| ||| ||||||||||||||||| ||||||    
T  699605 ttatgtttggatgcactttactaaaagtaattcttataagttaatgttg-ttggatagtttgaatcaaaatcgatttt 699529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 180; Significance: 5e-97; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 44939449 - 44939697
Alignment:
Q  11 tgagatgaatgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaa 110  Q
    |||| ||||| ||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||    
T  44939449 tgagttgaatatgaattgattatgtttggataca-tttactataagtgattcttatgagttgatgttgtttgaatagttttaatcaaaattaattttgaa 44939547  T
Q  111 tgtctaatgactaaattatccttataattaaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44939548 tgtctaatgactaaattatccttataattaaaactaaatatttcaatcttaattaaaataattatttaaacttatctaaaatcataaatggattttgatt 44939647  T
Q  211 tgttcacaaatttattt---aaaaataatttcatattataagagtttttt 257  Q
     ||||| ||||||||||   || |||||||||||||||||||||||||||    
T  44939648 ggttcagaaatttatttcaaaataataatttcatattataagagtttttt 44939697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 8424763 - 8425009
Alignment:
Q  11 tgagatgaatgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaa 110  Q
    |||| |||| |||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  8424763 tgagttgaacgtgaattgattatgtttggatacacttcaatagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttgag 8424862  T
Q  111 tgtctaatgactaaattatccttataattaaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatt 210  Q
    ||| |||||||||||||||||||  |||||||||||||||| | ||||| | ||||||||||||||| |||||||||||||||| ||||||||||| |||    
T  8424863 tgtgtaatgactaaattatccttcaaattaaaactaaatatcttattcttacttaaaataattatttgaacttatctaaaatcaaaaatggatttttatt 8424962  T
Q  211 tgttcacaaatttatttaaaaataatttcatattataagagtttttt 257  Q
     ||||||||||||||||||||||||||||| ||||||||||||||||    
T  8424963 ggttcacaaatttatttaaaaataatttcagattataagagtttttt 8425009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 35425401 - 35425162
Alignment:
Q  11 tgagatgaatgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaa 110  Q
    |||| ||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||    
T  35425401 tgagttgaatgtgaattgattatgtttggatacactttaacagaagtgattcttatgagttgatattgtttggatagtttgaatcaaaattgattttgaa 35425302  T
Q  111 tgtctaatgactaaattatccttataattaaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatt 210  Q
    ||| ||||||||||||||||||| | ||||||||||||||||| ||||| | |||||||| |||||| |||||||||||||| ||||||||||||| |||    
T  35425301 tgtgtaatgactaaattatccttttgattaaaactaaatattttattcttacttaaaatatttatttgaacttatctaaaattataaatggatttttatt 35425202  T
Q  211 tgttcacaaatttatttaaaaataatttcatattataaga 250  Q
     ||||||||||||||||||||||||||||| |||||||||    
T  35425201 ggttcacaaatttatttaaaaataatttcagattataaga 35425162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 30811565 - 30811811
Alignment:
Q  11 tgagatgaatgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaa 110  Q
    |||| ||||||||||| ||||||||||||||||||||||  ||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| ||    
T  30811565 tgagttgaatgtgaattgattatgtttggatacactttaacagaagtgattcttatgacttgatattgtttggatagtttgaatcaaaattgattttgaa 30811664  T
Q  111 tgtctaatgactaaattatccttataattaaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatt 210  Q
    ||| |||||| |||||||| ||| ||||||||||||||||||||||||| | |||||||| |||||| |||||||||||||| ||||||||||||| |||    
T  30811665 tgtgtaatgattaaattattcttttaattaaaactaaatatttcattcttacttaaaatatttatttgaacttatctaaaattataaatggatttttatt 30811764  T
Q  211 tgttcacaaatttatttaaaaataatttcatattataagagtttttt 257  Q
     ||||||||||||||||||||||||||||| ||||||||||| ||||    
T  30811765 ggttcacaaatttatttaaaaataatttcagattataagagtatttt 30811811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 42318387 - 42318166
Alignment:
Q  21 gtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatga 120  Q
    |||||| ||||||||||||||||||||   |  ||||||||||||||||||||| | ||||| |||||||||||||||||||||||| |||||  |||||    
T  42318387 gtgaattgattatgtttggatacacttgtttgaaagtgattcttatgagttgatttcgtttggatagtttgaatcaaaattgattttgaatgtaaaatga 42318288  T
Q  121 ctaaattatccttataa------ttaaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatttgtt 214  Q
    | ||||||||||| |||      ||||||||||| ||  |||||| | || | ||| |||||| |||||||||||||||||||||||||||| ||| |||    
T  42318287 caaaattatccttttaattgtatttaaaactaaacatcccattcttattttagatacttatttgaacttatctaaaatcataaatggatttttattggtt 42318188  T
Q  215 cacaaatttatttaaaaataat 236  Q
    || |||||||||| ||||||||    
T  42318187 caaaaatttattttaaaataat 42318166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 48189475 - 48189602
Alignment:
Q  11 tgagatgaatgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaa 110  Q
    |||| ||||||| ||| |||||||||||||||||| |||  ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||    
T  48189475 tgagttgaatgtaaattgattatgtttggatacacgttaacagaagtgattcttatgagttgatgttgtttggatagtttgaattaaaattgattttgaa 48189574  T
Q  111 tgtctaatgactaaattatccttataat 138  Q
    ||| ||||||||||||||||||| ||||    
T  48189575 tgtataatgactaaattatccttctaat 48189602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 38125485 - 38125705
Alignment:
Q  21 gtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatga 120  Q
    |||||| ||||||||||||||||||||   |  ||||||||||||||||||||| | ||||| |||||||||||||||||| ||||| |||||  |||||    
T  38125485 gtgaattgattatgtttggatacacttgtttgaaagtgattcttatgagttgatttcgtttggatagtttgaatcaaaattaattttgaatgtaaaatga 38125584  T
Q  121 ctaaattatccttataa------ttaaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatttgtt 214  Q
    | ||||||||||| |||      ||||||||||| ||  |||||| | || | ||| |||||| |||||||||||||||||||||||||||| ||| |||    
T  38125585 caaaattatccttttaattgtatttaaaactaaacatcccattcttattttagatacttatttgaacttatctaaaatcataaatggatttttattggtt 38125684  T
Q  215 cacaaatttatttaaaaataa 235  Q
    || || ||||||| |||||||    
T  38125685 caaaattttattttaaaataa 38125705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 30 - 133
Target Start/End: Original strand, 38172360 - 38172463
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||| ||||||| ||| |||    
T  38172360 ttatgtttggatacactttaatagaagtgattcttatgagttgatgttgtttggatagtttgaattaaaattgattttgaatgtgtaatgaccaaactat 38172459  T
Q  130 cctt 133  Q
    ||||    
T  38172460 cctt 38172463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 15511429 - 15511661
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||| ||| | || |||||||| |||||||||||| ||||||| ||||||||||| |||||||||||| ||||  ||||||| ||||||     
T  15511429 ttatgtttggatacgctt-attaaaagtgatttttatgagttgatattgtttggatagtttgaataaaaattgattttgaatgcgtaatgacgaaattac 15511527  T
Q  130 ccttataatt------aaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatttgttcacaaattt 223  Q
     ||| |||||      |||| ||||||| ||||||| |||| | ||||| |||| || ||||||||||||||||||| ||||| ||| ||||||||||||    
T  15511528 tcttttaattgtgtttaaaattaaatatctcattcttaatttagataatcatttgaatttatctaaaatcataaatgaatttttattggttcacaaattt 15511627  T
Q  224 atttaaaaataatttcatattataagagtttttt 257  Q
    |||| |||| ||| |||  |||| ||||| ||||    
T  15511628 attttaaaacaatgtcagtttatgagagtctttt 15511661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 10334186 - 10334077
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    ||||||||||||||||||||||| |||| ||||||||||||||| |||||||| |||||||||||||||||||||||| ||| | ||||||| ||| |||    
T  10334186 ttatgtttggatacactttactaaaagtaattcttatgagttgacgttgtttggatagtttgaatcaaaattgattttgaatttataatgaccaaactat 10334087  T
Q  130 ccttataatt 139  Q
    |||| |||||    
T  10334086 ccttttaatt 10334077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 16246147 - 16246256
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    ||||||||||| |||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||| ||||||  ||| |||    
T  16246147 ttatgtttggaaacactttaatagaagtgattcttaggagttgatgttgtttggatagtttgaatcaaaattgattttgaatgtgtaatgatcaaactat 16246246  T
Q  130 ccttataatt 139  Q
    |||| |||||    
T  16246247 ccttttaatt 16246256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 20813170 - 20813085
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatt 139  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| ||||||| |||||    
T  20813170 aagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgtgtaatgactaaactatccttttaatt 20813085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 53179896 - 53179778
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||||||||  || |||||||| |||||||||||| ||||||| ||||||| |||||||||||||||| |||||  |||||| |||||||    
T  53179896 ttatgtttggatacacttttttaaaagtgatttttatgagttgat-ttgtttggatagtttaaatcaaaattgattttgaatgtacaatgaccaaattat 53179798  T
Q  130 ccttataattaaaactaaat 149  Q
    |||| |||||||||| ||||    
T  53179797 ccttttaattaaaaccaaat 53179778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 236
Target Start/End: Complemental strand, 38340830 - 38340643
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatcc------ttataattaaaactaa 147  Q
    |||| ||| |||| |||||| |||||||| ||||||||||| |||||||||||||||||| || |||| |||||||||      |||||  |||||||||    
T  38340830 aagtaatttttataagttgacgttgtttggatagtttgaataaaaattgattttaaatgtgtagtgaccaaattatcctttttattatatataaaactaa 38340731  T
Q  148 atatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatttgttcacaaatttatttaaaaataat 236  Q
    |||| || |||| | || | |||||||||| ||||||||| ||||||||| |||||||| |||  |||||||| |||||| ||||||||    
T  38340730 atatctctttcttattttagataattatttgaacttatct-aaatcataattggatttttattgcttcacaaacttattttaaaataat 38340643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 52966886 - 52966971
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatt 139  Q
    ||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||| ||||||| ||||||||||| |||||    
T  52966886 aagtgattcttatgagttgatgttgtttagataggttgaatcaaaattgattttaaatgtgtaatgaccaaattatccttttaatt 52966971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 271 - 414
Target Start/End: Original strand, 44939739 - 44939868
Alignment:
Q  271 gatcaattgagttatttttaataactccctcacgtctccc--actcccccttgatcttcatttctccataagccttcacttctacccactacccatttcc 368  Q
    ||||||||||||||||||||||||||||||||||||||||  |||| |||||   |||||||||||||||||| |             ||| ||||||||    
T  44939739 gatcaattgagttatttttaataactccctcacgtctcccccactctccctt---cttcatttctccataagctt-------------ctatccatttcc 44939822  T
Q  369 atctttttctccaactctcaatactctacattttccttttccatct 414  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  44939823 atctttttctccacctctcaatactctacattttccttttccatct 44939868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 10853344 - 10853423
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatcctt 133  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| || |||| |||||||||||    
T  10853344 aagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgtgtattgaccaaattatcctt 10853423  T

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Target: chr3; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 53074960 - 53074869
Alignment:
Q  21 gtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatg 112  Q
    |||||| |||||||||||||||||||    || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  53074960 gtgaattgattatgtttggatacactcacttaaaagtgattcttatgagtggatgttgtttggatagtttgaatcaaaattgattttaaatg 53074869  T

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Target: chr3; HSP #19
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 30 - 133
Target Start/End: Original strand, 31618940 - 31619043
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||| ||    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||  || ||||    
T  31618940 ttatgtttggatactctcacttagaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattaattttgaatgtataatgatcaacttat 31619039  T
Q  130 cctt 133  Q
    ||||    
T  31619040 cctt 31619043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 3348291 - 3348182
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    ||||||||||||||||||   || |||| |||||||||||||||||||||||| ||| |||  ||||||||||||||| ||||| || |||| |||||||    
T  3348291 ttatgtttggatacacttccttaaaagtaattcttatgagttgatgttgtttggatattttatatcaaaattgattttgaatgtgtattgaccaaattat 3348192  T
Q  130 ccttataatt 139  Q
    |||| |||||    
T  3348191 ccttttaatt 3348182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 44224810 - 44224701
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||||||    || ||||||||||||||||||||||||||||| ||| ||| | |||||||||||||| |||||  |||||| |||||||    
T  44224810 ttatgtttggatacactcacttaaaagtgattcttatgagttgatgttgtttggataattttagtcaaaattgattttgaatgtgcaatgaccaaattat 44224711  T
Q  130 ccttataatt 139  Q
    |||| |||||    
T  44224710 ccttttaatt 44224701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 139
Target Start/End: Complemental strand, 23496354 - 23496263
Alignment:
Q  48 tactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatt 139  Q
    ||||| |||||||||||  | |||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| |||| || |||||    
T  23496354 tactaaaagtgattcttgcgggttgatgttgtttggatagtttgaatcaaaattgattttgaatgtataatgactaaactatcattttaatt 23496263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 26519732 - 26519629
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| |||||||||||||||  | || |||||||| |||| ||||||| ||||||| |||||||||| |||||||||||||||    
T  26519732 tgagttgaatgtgaattgatttatgtttggatacactcaattaaaagtgatttttattagttgatattgtttggatagtttgaaacaaaattgattttaa 26519633  T
Q  110 atgt 113  Q
    ||||    
T  26519632 atgt 26519629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 50664826 - 50664597
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| ||||||||||||||     ||||||||||||||| ||||| |||||||||  ||||||| ||| |||||||||||| |    
T  50664826 tgagttgaatgtgaattgatttatgtttggatacacacacttagaagtgattcttaagagtt-atgttgtttagatagtttaaattaaaattgattttga 50664728  T
Q  110 atgtctaatgactaaattatccttata-----attaaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggatt 204  Q
    |||| ||||||  ||||||||||| ||     ||| |||| |||||| |||||||   ||   |||||||||| | ||||  ||||||||||||| | ||    
T  50664727 atgtgtaatgatcaaattatccttttaataatatttaaacaaaatatctcattct-tgtttttataattatttcagcttacgtaaaatcataaataggtt 50664629  T
Q  205 ttgatttgttcacaaatttatttaaaaataat 236  Q
    || ||| ||||||||||| |||| ||||||||    
T  50664628 tttattggttcacaaattcatttgaaaataat 50664597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 129
Target Start/End: Complemental strand, 21225037 - 21224939
Alignment:
Q  31 tatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    ||||||||||||||||||  || ||| |||||||| |||||||||| ||||  |||||||||||||||||||||| | | ||| ||||||| |||||||    
T  21225037 tatgtttggatacactttcttaaaagcgattcttacgagttgatgtcgttttgatagtttgaatcaaaattgattatgagtgtataatgaccaaattat 21224939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 23207121 - 23207196
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttt 107  Q
    |||||||||||||||||||  || |||||||| |||||||||||||||||||| |||||||||||||||||| |||||    
T  23207121 ttatgtttggatacacttttttacaagtgatt-ttatgagttgatgttgtttg-atagtttgaatcaaaattaatttt 23207196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 31084275 - 31084147
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| ||||||||||||||||   || ||||||||||||||| ||||| || |||| ||||||||||||| |||||||||| |    
T  31084275 tgagttgaatgtgaattgatttatgtttggatacacttct-taaaagtgattcttatgacttgatattatttggatagtttgaatcataattgattttga 31084177  T
Q  110 atgtctaatgactaaattatccttataatt 139  Q
    || | ||||||| ||| |||| || |||||    
T  31084176 atatgtaatgaccaaactatcattttaatt 31084147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 22737005 - 22736920
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatt 139  Q
    |||||||| ||||||||| |||||||| | || ||||||||||||||||||||| ||||| ||||||  ||||||| ||| |||||    
T  22737005 aagtgattattatgagttaatgttgttgggatggtttgaatcaaaattgattttgaatgtgtaatgaacaaattatacttttaatt 22736920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 159
Target Start/End: Complemental strand, 25848053 - 25847946
Alignment:
Q  57 tgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatt------aaaactaaata 150  Q
    |||||||||||||||  ||||||||| |||||| |||| |||||||||||||||||| ||||||| ||||||| |||  ||||      |||||||||||    
T  25848053 tgattcttatgagtttgtgttgtttggatagtt-gaataaaaattgattttaaatgtgtaatgaccaaattatactttaaattgtattaaaaactaaata 25847955  T
Q  151 tttcattct 159  Q
    |||||||||    
T  25847954 tttcattct 25847946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 35930762 - 35930677
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatt 139  Q
    |||| ||||||||||||||||  |||||| || |||| |||||||||||||||| ||||| ||||||| ||| |||| || |||||    
T  35930762 aagtcattcttatgagttgataatgtttggatggtttaaatcaaaattgattttgaatgtgtaatgaccaaaatatcattttaatt 35930677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 139
Target Start/End: Complemental strand, 14959739 - 14959658
Alignment:
Q  58 gattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatt 139  Q
    |||| |||||||||||||||||||  ||  ||||||||||| |||||||| ||||| ||| || ||||||||| || |||||    
T  14959739 gatttttatgagttgatgttgtttagatgatttgaatcaaacttgattttgaatgtgtaacgattaaattatctttttaatt 14959658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 32357535 - 32357482
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttt 107  Q
    |||||||||||||| ||||||||||||||  || ||||||| ||||||||||||    
T  32357535 aagtgattcttatgtgttgatgttgtttgggtactttgaattaaaattgatttt 32357482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 37698485 - 37698530
Alignment:
Q  73 atgttgtttgaatagtttgaatcaaaattgattttaaatgtctaat 118  Q
    |||||||||| ||||||||||||||||||||||||| |||| ||||    
T  37698485 atgttgtttggatagtttgaatcaaaattgattttacatgtataat 37698530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 42475754 - 42475669
Alignment:
Q  33 tgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaat 118  Q
    |||||| |||||||||  || ||| ||||||||||| ||| ||||||||| |||  |||||||||||||| ||||| |||| ||||    
T  42475754 tgtttgaatacactttgttaaaagcgattcttatgaattgttgttgtttggatacattgaatcaaaattgcttttagatgtataat 42475669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 45423845 - 45423898
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttt 107  Q
    ||||||||||||| | || |||||||||| |||| |||||||||||||||||||    
T  45423845 aagtgattcttatcaattcatgttgtttggatagcttgaatcaaaattgatttt 45423898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 55087593 - 55087630
Alignment:
Q  68 agttgatgttgtttgaatagtttgaatcaaaattgatt 105  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  55087593 agttgatgttgtttggatagtttgaatcaaaattgatt 55087630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 30810022 - 30810078
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaa 110  Q
    ||||||||||||| | |||||| |||||| ||||||||||||||||||  |||||||    
T  30810022 aagtgattcttataaattgatgatgtttggatagtttgaatcaaaattacttttaaa 30810078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 10334048 - 10334001
Alignment:
Q  180 acttatctaaaatcataaatggattttgatttgttcacaaatttattt 227  Q
    ||||||||||||||||||||||||||  ||| ||||||||||| ||||    
T  10334048 acttatctaaaatcataaatggatttgtattggttcacaaattcattt 10334001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 44610311 - 44610363
Alignment:
Q  72 gatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaa 125  Q
    ||||||||||| ||||||||| |||||||||||||| ||||| |||| ||||||    
T  44610311 gatgttgtttggatagtttga-tcaaaattgattttgaatgtataattactaaa 44610363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 30811329 - 30811277
Alignment:
Q  73 atgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaa 125  Q
    |||||||||| |||||||  ||||||||||||||| ||||| |||| ||||||    
T  30811329 atgttgtttggatagttttgatcaaaattgattttgaatgtataattactaaa 30811277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 49526749 - 49526817
Alignment:
Q  57 tgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaa 125  Q
    |||||||||| | || ||||||||| |||||| | ||||||||||| |||| ||||| |||| ||||||    
T  49526749 tgattcttatcaatttatgttgtttaaatagtctaaatcaaaattgcttttgaatgtgtaattactaaa 49526817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 11 - 258
Target Start/End: Original strand, 29156 - 29403
Alignment:
Q  11 tgagatgaatgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaa 110  Q
    |||| ||||||||||| |||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||| ||    
T  29156 tgagttgaatgtgaattgattatgtttggatacactttaatagaagttattcttatgaattgatgttgtttggatagtttgaatcaaaattgattttgaa 29255  T
Q  111 tgtctaatgactaaattatccttataattaaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatt 210  Q
    ||| |||||||||||||||||||  |||||||||||||||| ||||||  | ||||||||||||||| ||||||||||||||||| |||||||||| |||    
T  29256 tgtgtaatgactaaattatccttcaaattaaaactaaatatctcattcctacttaaaataattatttgaacttatctaaaatcattaatggatttttatt 29355  T
Q  211 tgttcacaaatttatttaaaaataatttcatattataagagttttttc 258  Q
     ||||||||||||||||||||||||||||| |||||||||||||||||    
T  29356 ggttcacaaatttatttaaaaataatttcagattataagagttttttc 29403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 172; Significance: 3e-92; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 22 - 257
Target Start/End: Original strand, 2430338 - 2430573
Alignment:
Q  22 tgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgac 121  Q
    ||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||    
T  2430338 tgaattgattatgtttggatacacttcaatagaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattgattttgagtgtgtaatgac 2430437  T
Q  122 taaattatccttataattaaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatttgttcacaaat 221  Q
    ||||||||||||  |||||||||||||||| ||||||| | ||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||    
T  2430438 taaattatccttcaaattaaaactaaatatctcattcttacttaaaataattattttaacttatctaaaatcataaatggatttttattggttcacaaat 2430537  T
Q  222 ttatttaaaaataatttcatattataagagtttttt 257  Q
    ||||||||||||||||||| ||||||||||||||||    
T  2430538 ttatttaaaaataatttcagattataagagtttttt 2430573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 33953932 - 33954178
Alignment:
Q  11 tgagatgaatgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaa 110  Q
    |||| |||| || ||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||| | |||||||||||||||||| ||||| ||    
T  33953932 tgagttgaacgtaaattgattatgtttggatacactttaatagaagtgattctgatgagttgatgttgttcggatagtttgaatcaaaattaattttgaa 33954031  T
Q  111 tgtctaatgactaaattatccttataattaaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatt 210  Q
    ||| ||||||||||||||||||| ||||||||||||| ||| ||||||| | ||||||||||||||| ||| |||||||||||||||||||||||| |||    
T  33954032 tgtgtaatgactaaattatccttttaattaaaactaactatctcattcttacttaaaataattatttgaacatatctaaaatcataaatggatttttatt 33954131  T
Q  211 tgttcacaaatttatttaaaaataatttcatattataagagtttttt 257  Q
     ||||||||||||||||||||||||||| | ||||||||||||||||    
T  33954132 ggttcacaaatttatttaaaaataatttgagattataagagtttttt 33954178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 22482271 - 22482142
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| |||||||||||||||||| || ||||||||| | || |||||||||||||| |||||||||||||||||||||||| |    
T  22482271 tgagttgaatgtgaattgatttatgtttggatacactttattaaaagtgattcatgtgggttgatgttgtttggatagtttgaatcaaaattgattttga 22482172  T
Q  110 atgtctaatgactaaattatccttataatt 139  Q
    |||| ||||||||||| ||||||| |||||    
T  22482171 atgtataatgactaaactatccttttaatt 22482142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 28869553 - 28869763
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    ||||||||| ||||||||   || ||||||||||||||||||||||||||||| ||||||||| | ||||| |||||  | ||| ||||||| |||||||    
T  28869553 ttatgtttgaatacacttacttaaaagtgattcttatgagttgatgttgtttggatagtttgagt-aaaatagatttcgagtgtgtaatgaccaaattat 28869651  T
Q  130 ccttataatt------aaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatttgttcacaaattt 223  Q
    |||| |||||      |||||||||||| | ||||| ||||| | |||| |||| || ||||||||||||||||||| ||||| ||| ||||||||||||    
T  28869652 ccttttaattgtatttaaaactaaatatcttattcttaattaga-taatcatttgaatttatctaaaatcataaatgaatttttattggttcacaaattt 28869750  T
Q  224 atttaaaaataat 236  Q
    |||| ||||||||    
T  28869751 attttaaaataat 28869763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 41834954 - 41834845
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||| |||||||||||| |||||  |||||| |||||||    
T  41834954 ttatgtttggatacactttactagaagtgattcttacgaattgatgttgtttggatagtttgaatgaaaattgattttgaatgtgcaatgaccaaattat 41834855  T
Q  130 ccttataatt 139  Q
    |||| |||||    
T  41834854 ccttttaatt 41834845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 21 - 139
Target Start/End: Complemental strand, 32454608 - 32454490
Alignment:
Q  21 gtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatga 120  Q
    |||||| ||||||||||||||||||||   || ||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||  |||||    
T  32454608 gtgaattgattatgtttggatacacttgtttaaaagtgattcttatgagttgatgttgtttggatagtttgaatcaaaattaattttgaatgtaaaatga 32454509  T
Q  121 ctaaattatccttataatt 139  Q
    | ||||||||||| |||||    
T  32454508 ccaaattatccttgtaatt 32454490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 13253113 - 13253242
Alignment:
Q  11 tgagatgaatgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaa 110  Q
    |||| ||||| ||||| |||||||||||||||||||    || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  13253113 tgagttgaatatgaattgattatgtttggatacactcatttaaaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttgaa 13253212  T
Q  111 tgtctaatgactaaattatccttataatta 140  Q
      |  |||||| |||||| |||| ||||||    
T  13253213 cattaaatgaccaaattacccttttaatta 13253242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 10058136 - 10058059
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttt 107  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||| ||||||||||||    
T  10058136 ttatgtttggatacactttactagaagtgattcttacgaattgatgttgtttggatagtttgaatgaaaattgatttt 10058059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 24045866 - 24045711
Alignment:
Q  57 tgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataa------ttaaaactaaata 150  Q
    ||||| ||||| |||||||||||||| ||| ||||||| |||||||||||| || ||  |||||||||||||||||| |||      |||||||||||||    
T  24045866 tgatttttatgggttgatgttgtttggataatttgaattaaaattgattttgaacgtacaatgactaaattatccttttaattagatttaaaactaaata 24045767  T
Q  151 tttcattctgaattaaaataattatttaaacttatctaaaatcataaatggatttt 206  Q
    | ||||||  | || | |||||||||| |||||||||||||||||||||| |||||    
T  24045766 tctcattcatattttagataattattttaacttatctaaaatcataaatgcatttt 24045711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 149
Target Start/End: Original strand, 40495408 - 40495526
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||||||||  || |||||||| |||||||||||| ||||||||||||||| |||||||||||||||  |||||  |||||  |||||||    
T  40495408 ttatgtttggatacacttttttaaaagtgatttttatgagttgat-ttgtttgaatagtttaaatcaaaattgatttggaatgtacaatgatcaaattat 40495506  T
Q  130 ccttataattaaaactaaat 149  Q
    |||| |||||||||| ||||    
T  40495507 ccttttaattaaaaccaaat 40495526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 9275534 - 9275643
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||||||||| || || |||||||||||||||||||||||||| ||  ||||||| ||| |||||||| ||||| ||||||| |||||||    
T  9275534 ttatgtttggatacactttaataaaattgattcttatgagttgatgttgtttggatgatttgaatgaaacttgattttgaatgtgtaatgaccaaattat 9275633  T
Q  130 ccttataatt 139  Q
    | || |||||    
T  9275634 ctttttaatt 9275643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 3667936 - 3667833
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| |||||||||||||||  | || |||||||| |||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  3667936 tgagttgaatgtgaattgatttatgtttggatacactcaattaaaagtgatttttattagttgatattgtttggatagtttgaatcaaaattgattttaa 3667837  T
Q  110 atgt 113  Q
    ||||    
T  3667836 atgt 3667833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 57 - 186
Target Start/End: Complemental strand, 7714975 - 7714841
Alignment:
Q  57 tgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttata-----attaaaactaaatat 151  Q
    |||||||||| ||||||||||||||| ||||||||||| |||||||||||| || || ||||||||||||||||||| ||     ||||||| |||||||    
T  7714975 tgattcttataagttgatgttgtttggatagtttgaattaaaattgattttgaaagtataatgactaaattatccttttaatgttattaaaaataaatat 7714876  T
Q  152 ttcattctgaattaaaataattatttaaacttatc 186  Q
     ||||| | | || | |||||||||| ||||||||    
T  7714875 ctcattttcattttagataattatttgaacttatc 7714841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 32030752 - 32030675
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatcctt 133  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||| || || ||||||||||| |||||||    
T  32030752 aagtgattcttatg--ttgatgttgtttgaatagtttgaatcaaaattgattttgaaggtgtaatgactaaactatcctt 32030675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 3060297 - 3060375
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatcctt 133  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| || |||| |||||||||||    
T  3060297 aagtgattcttatgagtt-atgttgtttggatagtttgaatcaaaattgattttgaatgtgtattgaccaaattatcctt 3060375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 4292226 - 4292119
Alignment:
Q  16 tgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtc 114  Q
    ||||||||||| |||| |||||||||||||||| | |||||||||||||| |  |||||| ||||||| ||| |||||||||||||| ||||| |||||     
T  4292226 tgaatgtgaattgatttatgtttggatacacttaattagaagtgattcttgttggttgatattgtttggataatttgaatcaaaattaattttgaatgtg 4292127  T
Q  115 taatgact 122  Q
    ||||||||    
T  4292126 taatgact 4292119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 35760271 - 35760168
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| |||||||||||||||  | || || ||||| |||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  35760271 tgagttgaatgtgaattgatttatgtttggatacactcaattaaaactgatttttattagttgatattgtttggatagtttgaatcaaaattgattttaa 35760172  T
Q  110 atgt 113  Q
    ||||    
T  35760171 atgt 35760168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 40791111 - 40791220
Alignment:
Q  22 tgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgac 121  Q
    ||||| |||||||||||||||| ||| | || ||||||||||| ||||||||| ||||||| |||  ||||||||||||||||| | ||||| |||||||    
T  40791111 tgaattgattatgtttggatacgcttaattaaaagtgattcttttgagttgatattgtttggatacattgaatcaaaattgattgtgaatgtataatgac 40791210  T
Q  122 taaattatcc 131  Q
     | |||||||    
T  40791211 catattatcc 40791220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 142
Target Start/End: Complemental strand, 40885273 - 40885160
Alignment:
Q  30 ttatgtttggatacactttactagaagtga-ttcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaatta 128  Q
    ||||||||||| ||||||   || |||||| || |||||||||||| ||||||| |||||||||||||||||||||||| ||| | ||||||  ||||||    
T  40885273 ttatgtttggacacacttgtttaaaagtgagtttttatgagttgatattgtttggatagtttgaatcaaaattgattttgaatatgtaatgatcaaatta 40885174  T
Q  129 tccttataattaaa 142  Q
    ||||| ||||||||    
T  40885173 tccttttaattaaa 40885160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 42146378 - 42146269
Alignment:
Q  22 tgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgac 121  Q
    ||||| |||||||||||||||| ||| | || ||||||||||| ||||||||| ||||||| |||  ||||||||||||||||| | ||||| |||||||    
T  42146378 tgaattgattatgtttggatacgcttaattaaaagtgattcttttgagttgatattgtttggatacattgaatcaaaattgattgtgaatgtataatgac 42146279  T
Q  122 taaattatcc 131  Q
     | |||||||    
T  42146278 catattatcc 42146269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 41740643 - 41740726
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgt 113  Q
    ||||||||| ||||||||   || |||||||| |||||||||||||||||||| ||||||| |||||||||||||||| |||||    
T  41740643 ttatgtttgaatacacttgtttaaaagtgattgttatgagttgatgttgtttggatagtttaaatcaaaattgattttgaatgt 41740726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 27021167 - 27021087
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaata-gtttgaatcaaaattgattttaaatgtctaatgactaaattatcctt 133  Q
    ||||||||||||  ||||||||||||||| ||| | ||||||||||||||||||| ||||| ||||||| |||||||||||    
T  27021167 aagtgattcttagaagttgatgttgtttggataagattgaatcaaaattgattttgaatgtataatgacgaaattatcctt 27021087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 30 - 149
Target Start/End: Original strand, 16158515 - 16158634
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||| ||||||| ||||||  || |||||||||||| || |||||||| |||| ||  |||||||||||||||||||| ||||| ||||||  ||| |||    
T  16158515 ttatatttggatgcacttttttaaaagtgattcttaggaattgatgttctttggatgatttgaatcaaaattgattttgaatgtgtaatgatcaaaatat 16158614  T
Q  130 ccttataattaaaactaaat 149  Q
     ||| |||||||||| ||||    
T  16158615 tcttttaattaaaacgaaat 16158634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 7386006 - 7386062
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaa 110  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||||||| |||||||    
T  7386006 aagtgattcttatgagttgatgttgtttggataatttaaatcaaaattgcttttaaa 7386062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 8049101 - 8049181
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaa 110  Q
    ||||||||||||||||||   || ||||||||||||||||||| ||||||||| ||  ||| ||||||||||| |||||||    
T  8049101 ttatgtttggatacacttatttaaaagtgattcttatgagttgttgttgtttggatgatttaaatcaaaattgcttttaaa 8049181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 39988017 - 39988097
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaa 110  Q
    ||||||||||||||||||   || ||||||||||||||||||||||||||||| ||  ||| ||||||||||  |||||||    
T  39988017 ttatgtttggatacacttatttaaaagtgattcttatgagttgatgttgtttggatgatttaaatcaaaatttcttttaaa 39988097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 5710436 - 5710511
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattt 106  Q
    |||||||||||||| ||| | || |||||||| |||||||| ||| ||||||| ||||||||||| |||||||||||    
T  5710436 ttatgtttggatacgctt-attacaagtgatttttatgagtagatattgtttggatagtttgaataaaaattgattt 5710511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 2694834 - 2694887
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttt 107  Q
    ||||||||||||| | |||||| |||||| ||| ||||||||||||||||||||    
T  2694834 aagtgattcttatcaattgatgatgtttgtataatttgaatcaaaattgatttt 2694887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 34107021 - 34107068
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaatt 101  Q
    |||| |||||||||| || ||||||||||||||| |||||||||||||    
T  34107021 aagtaattcttatgaattaatgttgtttgaataggttgaatcaaaatt 34107068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 7178840 - 7178763
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttt 107  Q
    ||||||||||||||| |   ||| || |||||||||| | || ||||||||||  |||||||||||||||||| ||||    
T  7178840 ttatgtttggatacaataacctaaaattgattcttatcaatttatgttgtttgggtagtttgaatcaaaattgctttt 7178763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 41959499 - 41959446
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttt 107  Q
    |||||||||||||||||| |||||||||  ||||||||||  | ||||||||||    
T  41959499 aagtgattcttatgagttaatgttgttttcatagtttgaaatagaattgatttt 41959446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 3060419 - 3060487
Alignment:
Q  168 ataattatttaaacttatctaaaatcataaatggattttgatttgttcacaaatttatttaaaaataat 236  Q
    |||||||||| ||| |||||||||||||||||| || || ||| ||||| ||| | |||| ||||||||    
T  3060419 ataattatttcaacctatctaaaatcataaatgaatatttattggttcataaaatcattttaaaataat 3060487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 3747683 - 3747723
Alignment:
Q  73 atgttgtttgaatagtttgaatcaaaattgattttaaatgt 113  Q
    |||||||||| ||||||| ||||||||||||||||| ||||    
T  3747683 atgttgtttggatagttttaatcaaaattgattttacatgt 3747723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 16843573 - 16843517
Alignment:
Q  57 tgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgt 113  Q
    ||||| ||| |||||||||||||||| ||||||| ||| | |||||||||| |||||    
T  16843573 tgatttttacgagttgatgttgtttggatagtttaaatgataattgattttgaatgt 16843517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 40980037 - 40979985
Alignment:
Q  73 atgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaa 125  Q
    |||||||||| |||||||  ||||||||||||||| ||||| |||| ||||||    
T  40980037 atgttgtttggatagttttgatcaaaattgattttgaatgtataattactaaa 40979985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 3342859 - 3342756
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| ||| |||    
T  3342859 ttatgtttggatacactttaatagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttgaatatgtaatgaccaaactat 3342760  T
Q  130 cctt 133  Q
    ||||    
T  3342759 cctt 3342756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 34366022 - 34366254
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||| ||| | || |||||||| |||||||||||||||||||| ||||||||||| |||||||||||| || |  ||||||| ||||||     
T  34366022 ttatgtttggatacgctt-attaaaagtgatttttatgagttgatgttgtttggatagtttgaataaaaattgattttgaaggcgtaatgaccaaattac 34366120  T
Q  130 ccttataa------ttaaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatttgttcacaaattt 223  Q
    |||| |||      |||||| ||||||| ||||||| |||| | ||||| |||| || ||||||||||||||||||| ||||| ||| ||||||||||||    
T  34366121 ccttttaactgtgtttaaaattaaatatctcattcttaatttagataatcatttgaatttatctaaaatcataaatgaatttttattggttcacaaattt 34366220  T
Q  224 atttaaaaataatttcatattataagagtttttt 257  Q
    |||| |||| ||| |||  |||| ||||| ||||    
T  34366221 attttaaaacaatatcagtttatgagagtctttt 34366254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 140
Target Start/End: Original strand, 44967419 - 44967549
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| ||||||| |||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |    
T  44967419 tgagttgaatgtgaattgatttatgtttgaatacactttaatagaagtgattcttatgagttgatgttgtttggataatttgaatcaaaattgattttga 44967518  T
Q  110 atgtctaatgactaaattatccttataatta 140  Q
     | | ||||||| ||||||||||| ||||||    
T  44967519 gtttgtaatgaccaaattatccttttaatta 44967549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 38230157 - 38230036
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| ||||||||||||| |||| || ||||||||| | || |||||||||||||| ||||||||||||||||||||||||||    
T  38230157 tgagttgaatgtgaattgatttatgtttggatacattttattaaaagtgattcatgtgggttgatgttgtttggatagtttgaatcaaaattgattttaa 38230058  T
Q  110 atgtctaatgactaaattatcc 131  Q
    |||| ||||||||||| |||||    
T  38230057 atgtgtaatgactaaactatcc 38230036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 37639514 - 37639390
Alignment:
Q  16 tgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtc 114  Q
    ||||||||||| |||| ||||||||| | |||||| || ||||||||||| || |||||||||||||| |||||||||||||||||| |||||||||||     
T  37639514 tgaatgtgaattgatttatgtttggagaaactttattaaaagtgattcttgtgggttgatgttgtttggatagtttgaatcaaaattaattttaaatgtg 37639415  T
Q  115 taatgactaaattatccttataatt 139  Q
    ||||||||||| ||||||| |||||    
T  37639414 taatgactaaactatccttttaatt 37639390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 28 - 199
Target Start/End: Complemental strand, 9456176 - 9456001
Alignment:
Q  28 gattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaatt 127  Q
    ||||||||||||||||||||   || ||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||  |||||| |||||    
T  9456176 gattatgtttggatacacttgtttaaaagtgattcttatgagttgatcttgtttggatagtttgaatcaaaattgattttgaatgtaaaatgaccaaatt 9456077  T
Q  128 atccttataa------ttaaaactaaatatttcattctgaattaaaataattatttaaacttatctaaaatcataaat 199  Q
    ||| || |||      |||||||||||||  ||||| | | || | |||||||||| ||||||||||| |||||||||    
T  9456076 atctttttaattgtatttaaaactaaata--tcattttcattttagataattattttaacttatctaatatcataaat 9456001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 39391177 - 39391286
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||||||||  || ||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || |||||||  || |||    
T  39391177 ttatgtttggatacactttcttacaagtgattcttatgaattgatgttgtttgaatagtttgaatcaaaattgattttgaacgtgtaatgacctaactat 39391276  T
Q  130 ccttataatt 139  Q
    |||| |||||    
T  39391277 ccttttaatt 39391286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 55 - 236
Target Start/End: Original strand, 47301622 - 47301799
Alignment:
Q  55 agtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatcc------ttataattaaaactaaa 148  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||  ||||||||||||||||      ||||| |||||||||||    
T  47301622 agtgattcttatgggttgatgttgtttggatagtttgaatcaaaattgattttgaatgtaaaatgactaaattatccttttaattatatttaaaactaaa 47301721  T
Q  149 tatttcattctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatttgttcacaaatttatttaaaaataat 236  Q
     || ||||||| | || | ||          ||||||||||||||||||||||||||| ||| ||||| |||||||||| ||||||||    
T  47301722 catctcattcttattttagat----------acttatctaaaatcataaatggatttttattggttcaaaaatttattttaaaataat 47301799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 12632147 - 12632232
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatt 139  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||| ||| ||||||| |||||    
T  12632147 aagtgattcttatgagttgatgttgtttgaattgtttgaatcaaaattgattttgaatgtgtaatgaccaaaatatccttttaatt 12632232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 47021988 - 47021879
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    ||||||||||||||||||||||||| |||||||||| || ||||||||||||| ||| ||||||| |||||||||||| |||||  |||||| |||||||    
T  47021988 ttatgtttggatacactttactagatgtgattcttacgaattgatgttgtttggataatttgaatgaaaattgattttgaatgtgcaatgaccaaattat 47021889  T
Q  130 ccttataatt 139  Q
    | || |||||    
T  47021888 cattttaatt 47021879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 10371978 - 10372093
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| |||||||| |||| |||| |||||||||||||| || |||||||||||| | |||||||||||||||||||||||| |    
T  10371978 tgagttgaatgtgaattgatttatgtttggttacagtttattagaagtgattcttgtgggttgatgttgttcggatagtttgaatcaaaattgattttga 10372077  T
Q  110 atgtctaatgactaaa 125  Q
    |||  |||||||||||    
T  10372078 atgcgtaatgactaaa 10372093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 37562639 - 37562531
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    ||||||||||||||||||   || ||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||  |||| ||||||| ||| |||    
T  37562639 ttatgtttggatacacttatttaaaagtgattcatatgagttgatgttgtttggatagtttgaatgaaaattgattttgtatgtgtaatgaccaaactat 37562540  T
Q  130 ccttataat 138  Q
    |||| ||||    
T  37562539 ccttttaat 37562531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 48134656 - 48134540
Alignment:
Q  23 gaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgact 122  Q
    |||| ||||||||||||||| ||||   || |||||||| |||| ||||||||||||||| |||||||||||||||||||||||| ||||| |||||||     
T  48134656 gaattgattatgtttggataaacttgtttaaaagtgatttttataagttgatgttgtttggatagtttgaatcaaaattgattttgaatgtgtaatgacc 48134557  T
Q  123 aaattatccttataatt 139  Q
     | |||||||| |||||    
T  48134556 tagttatccttgtaatt 48134540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 43737982 - 43738088
Alignment:
Q  33 tgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatcct 132  Q
    |||||||||| ||||   || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||  |||||| |||||| |||    
T  43737982 tgtttggataaacttatttaaaagtgattcttatgagtggatgttgtttggatagtttgaatcaaaattgattttgaatgtgaaatgaccaaattaacct 43738081  T
Q  133 tataatt 139  Q
    | |||||    
T  43738082 tttaatt 43738088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 48459799 - 48459669
Alignment:
Q  11 tgagatgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaa 109  Q
    |||| ||||||||||| |||| ||||||||||||||||   || ||||||||||||||| | ||||||||||| ||||| || || ||||||||||||||    
T  48459799 tgagttgaatgtgaattgatttatgtttggatacacttacttaaaagtgattcttatgaatggatgttgtttggatagtatgtattaaaattgattttaa 48459700  T
Q  110 atgtctaatgactaaattatccttataatta 140  Q
     ||| ||||||| ||| ||||||| ||||||    
T  48459699 gtgtgtaatgaccaaactatccttttaatta 48459669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 3622500 - 3622609
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    ||||||||||||||||||   || |||||||||||| |||||||||||||||| ||||| | |||||||||||||||||||||| ||| ||  ||| |||    
T  3622500 ttatgtttggatacacttacttaaaagtgattcttacgagttgatgttgtttggatagtataaatcaaaattgattttaaatgtgtaacgatcaaagtat 3622599  T
Q  130 ccttataatt 139  Q
    |||| |||||    
T  3622600 ccttttaatt 3622609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 3750755 - 3750647
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||||||||| || || ||| |||||||| ||||||||||||| ||||||| |||||||||| ||||| ||||| ||||||| ||| |||    
T  3750755 ttatgtttggatacactttaatataattgaatcttatgaattgatgttgtttggatagtttaaatcaaaattaatttt-aatgtgtaatgaccaaactat 3750657  T
Q  130 ccttataatt 139  Q
    |||| |||||    
T  3750656 ccttttaatt 3750647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 30 - 222
Target Start/End: Complemental strand, 32205994 - 32205796
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgt-ctaatgactaaatta 128  Q
    ||||||||||||||||||   || |||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||| | |||||| ||||||    
T  32205994 ttatgtttggatacacttacttaaaagtgattcttatgagtt-atgttgtttga-tagtatgaatcaaaattgattttaaatgtgcaaatgaccaaatta 32205897  T
Q  129 tcc------ttataattaaaactaaatatttc-attctgaattaaaataattatttaaacttatctaaaatcataaatggattttgatttgttcacaaat 221  Q
     ||      || || ||||||||||||||||| ||||| | ||   |||||||||| | |||||||||| | ||||||| ||||| ||| ||||| ||||    
T  32205896 acctttaaattttatttaaaactaaatatttcaattctcattttggataattatttcagcttatctaaagttataaatgcatttttattggttcataaat 32205797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 386506 - 386624
Alignment:
Q  16 tgaatgtgaatagatt-atgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattga-ttttaaatgt 113  Q
    ||||||||||| |||| ||||||||||| |||   | | ||||||||||||||| ||||||||||||| |||| ||||||||||||||| ||||||||||    
T  386506 tgaatgtgaattgatttatgtttggatatactaaccgaaaagtgattcttatga-ttgatgttgtttggatagattgaatcaaaattgatttttaaatgt 386604  T
Q  114 ctaatgactaaattatcctt 133  Q
     ||||||| |||||||||||    
T  386605 ataatgaccaaattatcctt 386624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 3375556 - 3375450
Alignment:
Q  33 tgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatcct 132  Q
    ||||||||||||||    || ||||||||||||||||| ||||||||||| ||  |||| ||||||||||||||| |||||  |||||| ||||||||||    
T  3375556 tgtttggatacactcacttaaaagtgattcttatgagtcgatgttgtttggatgatttggatcaaaattgattttgaatgtgcaatgaccaaattatcct 3375457  T
Q  133 tataatt 139  Q
    | |||||    
T  3375456 tttaatt 3375450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 47217605 - 47217691
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatta 140  Q
    |||||||| | ||| |||||||||||||| ||||||||||| |||||||||||| || ||  |||||||||||||||||| ||||||    
T  47217605 aagtgattttgatgggttgatgttgtttggatagtttgaattaaaattgattttgaacgtacaatgactaaattatccttttaatta 47217691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 140
Target Start/End: Complemental strand, 34010411 - 34010299
Alignment:
Q  28 gattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaatt 127  Q
    ||||||||||| |||||||    || ||||| ||||||||||||||||||||||| |||||||||||||||||| ||||| ||  |  |||||| |||||    
T  34010411 gattatgtttgaatacactcatttaaaagtggttcttatgagttgatgttgtttggatagtttgaatcaaaattaattttgaacattaaatgaccaaatt 34010312  T
Q  128 atccttataatta 140  Q
    | |||| ||||||    
T  34010311 acccttttaatta 34010299  T

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Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 42740437 - 42740351
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatta 140  Q
    |||||||||||||| |||||| ||||||| ||||| || ||||||||||||||||| ||| ||||||| ||| |||| || ||||||    
T  42740437 aagtgattcttatgtgttgatattgtttggatagtatgtatcaaaattgattttaagtgtgtaatgaccaaagtatcattttaatta 42740351  T

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Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 19096017 - 19095929
Alignment:
Q  18 aatgtgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttt 107  Q
    ||||||||| | |||||||||||||||||    || || ||||||||||||||| |||||||||| ||| ||||||||||||||||||||    
T  19096017 aatgtgaattggttatgtttggatacactcgtttaaaaatgattcttatgagtt-atgttgtttggataatttgaatcaaaattgatttt 19095929  T

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Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 43631727 - 43631823
Alignment:
Q  22 tgaatagattatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaat 118  Q
    ||||| |||||||||||||||  ||| | || ||||||||||| ||||||||| ||||||| |||  ||||||||||||||||| | ||||| ||||    
T  43631727 tgaattgattatgtttggatatgcttaattaaaagtgattcttttgagttgatattgtttggatatattgaatcaaaattgattgtgaatgtataat 43631823  T

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Target: chr7; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 46541645 - 46541566
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttt-aaatgtctaatgactaaattatcctt 133  Q
    ||||||||||||||| ||||| ||||||  |||| ||||||||||||||||||| |||||| ||||||| |||||||||||    
T  46541645 aagtgattcttatga-ttgatattgttttgatagattgaatcaaaattgatttttaaatgtataatgaccaaattatcctt 46541566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 37008390 - 37008447
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatag 87  Q
    ||||||||||| |||||||  || ||||||||||||||||||||||||||||| ||||    
T  37008390 ttatgtttggagacactttcttataagtgattcttatgagttgatgttgtttggatag 37008447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 1766470 - 1766417
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatttt 107  Q
    ||||||||||||| | |||||| |||||||||| ||||||| ||||||||||||    
T  1766470 aagtgattcttatcaattgatgatgtttgaataatttgaattaaaattgatttt 1766417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 37886854 - 37886891
Alignment:
Q  74 tgttgtttgaatagtttgaatcaaaattgattttaaat 111  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  37886854 tgttgtttggatagtttgaatcaaaattgattttaaat 37886891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 34011025 - 34011093
Alignment:
Q  54 aagtgattcttatgagttgatgttgttt-gaatagtttgaatcaaaattgattttaaatgtctaatgac 121  Q
    |||||||||||||||||||||||||||| |  || ||| |||||||||||||||| || || |||||||    
T  34011025 aagtgattcttatgagttgatgttgtttggggtactttaaatcaaaattgattttgaacgtgtaatgac 34011093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 36920244 - 36920293
Alignment:
Q  56 gtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgatt 105  Q
    ||||||||| |||||||||||||||||  ||  |||||||||||||||||    
T  36920244 gtgattcttttgagttgatgttgtttgggtacattgaatcaaaattgatt 36920293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 4035960 - 4035908
Alignment:
Q  73 atgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaa 125  Q
    |||||||||| ||||||| ||||||||||| |||| ||||| |||| ||||||    
T  4035960 atgttgtttggatagttttaatcaaaattgcttttgaatgtataattactaaa 4035908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 43581664 - 43581616
Alignment:
Q  70 ttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaat 118  Q
    ||||||||||||| ||||||||||| ||||||| ||||| |||| ||||    
T  43581664 ttgatgttgtttggatagtttgaattaaaattgcttttagatgtgtaat 43581616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 8497 - 8384
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    |||||||||||||||||||  || || ||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||  |||||| |||||||    
T  8497 ttatgtttggatacacttttttaaaaatgatttttatgagttgatgttgtttggatagtttgaatcaaaattgattttgaatgtacaatgaccaaattat 8398  T
Q  130 ccttataattaaaa 143  Q
    |||| |||||||||    
T  8397 ccttttaattaaaa 8384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 31 - 138
Target Start/End: Complemental strand, 9158 - 9051
Alignment:
Q  31 tatgtttggatacactttactag-aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    ||||||||||||||| | ||| | ||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||| |||||||||||||||    
T  9158 tatgtttggatacac-tcacttgaaagtgattcttatgagtagatgttgtttggatagtttgaattaaaattgattttgaatgtataatgactaaattat 9060  T
Q  130 ccttataat 138  Q
    |||| ||||    
T  9059 ccttttaat 9051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 253152 - 253073
Alignment:
Q  54 aagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatcctt 133  Q
    |||||||||||||||||| |||||||||| |||| ||||||||||||||||||| ||| | ||||||| || ||||||||    
T  253152 aagtgattcttatgagttaatgttgtttggatagattgaatcaaaattgattttgaatatataatgaccaacttatcctt 253073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 5895 - 5987
Alignment:
Q  46 tttactagaagtgattcttatgagttgatgttgtttgaatagttt-----gaatcaaaattgattttaaatgtctaatgactaaattatcctt 133  Q
    |||| |||||||||||||| || |||||||||||||| |||||||     ||||||||||||||||| ||||| ||||||||||| |||||||    
T  5895 tttattagaagtgattcttgtgggttgatgttgtttggatagtttaatttgaatcaaaattgattttgaatgtgtaatgactaaactatcctt 5987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0983 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 2321 - 2433
Alignment:
Q  30 ttatgtttggatacactttactagaagtgattcttatgagttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattat 129  Q
    ||||||||||| ||||||   || ||||| || |||  |||||| |||||||  ||||||||||||||||||||||||  || | ||||||| |||||||    
T  2321 ttatgtttggacacacttgtttaaaagtggtttttacaagttgacgttgtttagatagtttgaatcaaaattgattttggatatgtaatgaccaaattat 2420  T
Q  130 ccttataattaaa 142  Q
    |||| ||||||||    
T  2421 ccttttaattaaa 2433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 9254 - 9306
Alignment:
Q  73 atgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaa 125  Q
    |||||||||| |||||||  ||||||||||||||||||||| |||| ||||||    
T  9254 atgttgtttggatagttttgatcaaaattgattttaaatgtataattactaaa 9306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 2120 - 2189
Alignment:
Q  70 ttgatgttgtttgaatagtttgaatcaaaattgattttaaatgtctaatgactaaattatccttataatt 139  Q
    ||||||||||||| ||||||| | |||||||||||||| ||| | ||| |||  |||||||||| |||||    
T  2120 ttgatgttgtttggatagtttaagtcaaaattgattttgaatatataaagaccgaattatccttttaatt 2189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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