View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11861_high_2 (Length: 718)

Name: NF11861_high_2
Description: NF11861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11861_high_2
NF11861_high_2
[»] chr8 (5 HSPs)
chr8 (1-685)||(37686271-37686955)
chr8 (9-214)||(33220561-33220753)
chr8 (180-340)||(4640713-4640873)
chr8 (202-328)||(43635142-43635268)
chr8 (262-308)||(33800498-33800544)
[»] chr2 (10 HSPs)
chr2 (180-343)||(37891619-37891782)
chr2 (187-343)||(12967267-12967424)
chr2 (187-273)||(11713076-11713162)
chr2 (202-302)||(22496013-22496116)
chr2 (202-317)||(11712981-11713097)
chr2 (187-273)||(22495947-22496034)
chr2 (180-308)||(2154294-2154423)
chr2 (202-271)||(18394910-18394979)
chr2 (202-271)||(42121933-42122002)
chr2 (187-273)||(42121866-42121954)
[»] chr7 (9 HSPs)
chr7 (180-340)||(30362795-30362955)
chr7 (227-344)||(42548157-42548273)
chr7 (192-273)||(38790969-38791050)
chr7 (202-340)||(1537186-1537324)
chr7 (187-273)||(48211897-48211984)
chr7 (202-308)||(48211812-48211918)
chr7 (202-270)||(31826114-31826182)
chr7 (202-269)||(26502371-26502438)
chr7 (202-269)||(26590276-26590343)
[»] chr3 (12 HSPs)
chr3 (180-279)||(47068195-47068294)
chr3 (202-308)||(53824322-53824428)
chr3 (187-343)||(2325485-2325642)
chr3 (187-343)||(44833467-44833629)
chr3 (202-308)||(35485275-35485383)
chr3 (187-271)||(42387851-42387936)
chr3 (202-302)||(42947413-42947514)
chr3 (187-273)||(35485362-35485449)
chr3 (187-271)||(42993635-42993719)
chr3 (187-273)||(16967853-16967942)
chr3 (187-273)||(53824407-53824496)
chr3 (230-271)||(42947495-42947536)
[»] chr1 (4 HSPs)
chr1 (202-340)||(39650196-39650334)
chr1 (187-273)||(47485505-47485593)
chr1 (187-273)||(39650313-39650402)
chr1 (202-328)||(45690987-45691114)
[»] chr4 (15 HSPs)
chr4 (202-323)||(53265809-53265931)
chr4 (202-302)||(28796658-28796758)
chr4 (187-273)||(53265910-53265996)
chr4 (187-271)||(33161699-33161783)
chr4 (187-303)||(46813892-46814007)
chr4 (187-308)||(36174503-36174625)
chr4 (202-314)||(47043928-47044041)
chr4 (202-337)||(40312731-40312869)
chr4 (202-337)||(40322807-40322945)
chr4 (187-265)||(42099431-42099510)
chr4 (231-273)||(40312710-40312752)
chr4 (231-273)||(40322786-40322828)
chr4 (187-273)||(887073-887161)
chr4 (252-329)||(1228030-1228106)
chr4 (187-273)||(28796737-28796825)
[»] scaffold1455 (2 HSPs)
scaffold1455 (202-308)||(313-419)
scaffold1455 (202-273)||(263-334)
[»] chr6 (4 HSPs)
chr6 (202-308)||(14830424-14830530)
chr6 (202-289)||(16444320-16444407)
chr6 (202-341)||(14153353-14153492)
chr6 (187-273)||(14153471-14153558)
[»] chr5 (8 HSPs)
chr5 (202-308)||(1974188-1974294)
chr5 (231-328)||(19401967-19402065)
chr5 (202-308)||(40017292-40017398)
chr5 (202-307)||(3461524-3461629)
chr5 (215-273)||(19401921-19401979)
chr5 (198-273)||(40017237-40017313)
chr5 (187-273)||(1974273-1974360)
chr5 (187-273)||(3461457-3461545)
[»] scaffold0016 (1 HSPs)
scaffold0016 (196-342)||(69720-69866)


Alignment Details
Target: chr8 (Bit Score: 625; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 1 - 685
Target Start/End: Complemental strand, 37686955 - 37686271
Alignment:
Q  1 ttctgttaaattggaattcaatagcatgtgagaaacaagagcagggtgattagattatcaaaagcatgggctgttacacaacaaccgattcaatagaacg 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  37686955 ttctgttaaatttgaattcaatagcatgtgagaaacaagagcagggtgattagattatcaaaagcatgggttgttacacaacaaccgattcaatagaatg 37686856  T
Q  101 tgaggaaggaagaaaggcagaaagaaactgggtttgaaggagaaatgttttttcttctcagcgtgagttaactgacgcggcgtaacttaagtcacgttca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| || |||||||||||| |||    
T  37686855 tgaggaaggaagaaaggcagaaagaaactgggtttgaaggagaaatgttttttcttctcagcgtgagttaactcatgcggtgtgacttaagtcacgctca 37686756  T
Q  201 taatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttact 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37686755 taatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagtgcatgttaagttgcgcaaggccattttagacttttact 37686656  T
Q  301 ttaggaataaacgaaacgatttgggtaaagaggagaattcttaccccatactatctagagcttttgcactgtaagcttcatgatatactctattgtcgtc 400  Q
    || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37686655 ttgggaatgaacgaaacgatttgggtaaagaggagaattcttaccccatactatctagagcttttgcactgtaagcttcatgatagactctattgtcgtc 37686556  T
Q  401 tacaagagcactaaccacacctccaactgaaccttggtacacctctttctttgagttcaattcagccacatgtacaccacaacaccccaacaatatagag 500  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37686555 tacaagagcactaaccacacctccaactcaaccttggtacacctctttctttgagttcaattcagccacatgtacaccacaacaccccaacaatatagag 37686456  T
Q  501 aattcatcacccgaaatatacctccacaactaggatatatgaaatgaagtcatttattaaatgttttatgcacactattaaaatactactatagataaaa 600  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37686455 aattcatcacccgaaagatacctccacaactaggatatatgaaatgaagtcatttattaaatgttttatgcacactattaaaatactactatagataaaa 37686356  T
Q  601 ttgtaaacatttaagagatatgcattgtcagtgtacaacaattttacacttatattcaatcaaaattcactagattgccatatca 685  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37686355 ttgtaaacatttaagagatatgcattgtcagtgtacaacaattttacactgatattcaatcaaaattcactagattgccatatca 37686271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 33220561 - 33220753
Alignment:
Q  9 aattggaattcaatagcatgtgagaaacaagagcagggtgattagattatcaaaagcatgggctgttacacaacaaccgattcaatagaacgtgaggaag 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||| | |||||||||    
T  33220561 aattggaattcaatagcatgtgagaaacaagagcagggtgattagattatcaaaagcat-------------acaaccgattcaatagcatgtgaggaag 33220647  T
Q  109 gaagaaaggcagaaagaaactgggtttgaaggagaaatgttttttcttctcagcgtgagttaactgacgcggcgtaacttaagtcacgttcataatacac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| |||| |||||||||||| ||| |||||||    
T  33220648 gaagaaaggcagaaagaaactgggtttgaaggagaaatgttttttcttcccggcgtgagttaactcacgctgcgtgacttaagtcacgctcaaaatacac 33220747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 180 - 340
Target Start/End: Original strand, 4640713 - 4640873
Alignment:
Q  180 gcgtaacttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgca 279  Q
    |||| |||||||||||||| | ||||||||||||||||| |||||| | | |||| ||||||||| ||| |||||||||||||||||||||||||| | |    
T  4640713 gcgtgacttaagtcacgttaagaatacactagcgcatgttaagtcacgaagcgtggcttaacatatgtaaaaaatacactagcgcatgttaagttgtgta 4640812  T
Q  280 aggccattttagacttttactttaggaataaacgaaacgatttgggtaaagaggagaattc 340  Q
     || |||||||| |||||||||| | ||| | ||| ||  ||||||||| ||| |||||||    
T  4640813 ggggcattttagtcttttactttggaaatgagcgatacagtttgggtaatgagcagaattc 4640873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 202 - 328
Target Start/End: Complemental strand, 43635268 - 43635142
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactt 301  Q
    ||||||||||||||||| |||||| | | ||| |||||||||||||||||| ||||||||||||||||||  |||| | || || | ||||| |||||||    
T  43635268 aatacactagcgcatgttaagtcacgaagcgtaacttaacataagtacaaattacactagcgcatgttaacatgcgtacgggcaatatagacatttactt 43635169  T
Q  302 taggaataaacgaaacgatttgggtaa 328  Q
    ||| |||||||| ||| ||||| ||||    
T  43635168 tagaaataaacggaaccatttgagtaa 43635142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 262 - 308
Target Start/End: Original strand, 33800498 - 33800544
Alignment:
Q  262 cgcatgttaagttgcgcaaggccattttagacttttactttaggaat 308  Q
    ||||||||||  ||||||||| |||||||||| ||||||||||||||    
T  33800498 cgcatgttaacatgcgcaagggcattttagacatttactttaggaat 33800544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 2e-39; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 180 - 343
Target Start/End: Complemental strand, 37891782 - 37891619
Alignment:
Q  180 gcgtaacttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgca 279  Q
    |||| |||||||||||| |||||||||||||| |||||| |||||| | || ||||||||||||||||||||||||||||||| |||||||||||| |||    
T  37891782 gcgtgacttaagtcacgctcataatacactagtgcatgttaagtcacgtaatgtgacttaacataagtacaaaatacactagcacatgttaagttgtgca 37891683  T
Q  280 aggccattttagacttttactttaggaataaacgaaacgatttgggtaaagaggagaattctta 343  Q
     || ||||||||||||||| ||| ||||| |  |||| ||||||  ||||||| ||||||||||    
T  37891682 ggggcattttagacttttagtttgggaatgactgaaatgatttgaataaagagcagaattctta 37891619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 187 - 343
Target Start/End: Complemental strand, 12967424 - 12967267
Alignment:
Q  187 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccat 286  Q
    |||| ||||||||| |||||||||||||| || |||||| | | |||||||||||||| ||||||||||||  ||||||||||||  |||| | ||  ||    
T  12967424 ttaactcacgttcagaatacactagcgcaagttaagtcacgtagcgtgacttaacataggtacaaaatacagcagcgcatgttaacatgcgtaggggtat 12967325  T
Q  287 tttagac-ttttactttaggaataaacgaaacgatttgggtaaagaggagaattctta 343  Q
    ||| ||| |||||||||  |||| | || ||| |||| ||||| ||| ||||||||||    
T  12967324 tttggactttttactttgagaatgagcggaaccatttaggtaatgagcagaattctta 12967267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 187 - 273
Target Start/End: Complemental strand, 11713162 - 11713076
Alignment:
Q  187 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagt 273  Q
    |||| ||||| ||| |||||||| | ||| || |||||| || |||||||||||| || ||||||||||||||||||||||||||||    
T  11713162 ttaactcacgctcagaatacacttgtgcaagttaagtcacgctacgtgacttaacttaggtacaaaatacactagcgcatgttaagt 11713076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 202 - 302
Target Start/End: Original strand, 22496013 - 22496116
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaa---tacactagcgcatgttaagttgcgcaaggccattttagactttta 298  Q
    ||||||||||||||||| |||||| | | |||||||||||||| ||| ||||   ||||||| ||||||||||  |||| |||| |||||||||| ||||    
T  22496013 aatacactagcgcatgttaagtcacgtagcgtgacttaacataggtaaaaaaaaatacactatcgcatgttaacatgcgtaagggcattttagacattta 22496112  T
Q  299 cttt 302  Q
    ||||    
T  22496113 cttt 22496116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 202 - 317
Target Start/End: Complemental strand, 11713097 - 11712981
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatac-actagcgcatgttaagttgcgcaaggccattttagacttttact 300  Q
    ||||||||||||||||| |||||| | | | |||||||||||||||||| | ||| |||||||||||||||  | || | || |||||| ||||||||||    
T  11713097 aatacactagcgcatgttaagtcacgtagcatgacttaacataagtacatattacaactagcgcatgttaacatacgtaggggcattttggacttttact 11712998  T
Q  301 ttaggaataaacgaaac 317  Q
    || ||||| | ||||||    
T  11712997 ttgggaatgagcgaaac 11712981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 22495947 - 22496034
Alignment:
Q  187 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagt-acaaaatacactagcgcatgttaagt 273  Q
    |||| ||||| ||| |||||||||||||| || |||||| || |||||||||||| || || | ||||||||||||||||||||||||    
T  22495947 ttaactcacgctcagaatacactagcgcaagttaagtcacgctacgtgacttaacttaggtaaaaaaatacactagcgcatgttaagt 22496034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 180 - 308
Target Start/End: Complemental strand, 2154423 - 2154294
Alignment:
Q  180 gcgtaacttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagt-acaaaatacactagcgcatgttaagttgcgc 278  Q
    |||| |||||||||||| | | ||| |||||| |||||| |||||| | | |||||||||||||| || | |||||||||||  |||||||||||||||     
T  2154423 gcgtgacttaagtcacgctaagaatgcactagtgcatgttaagtcacgtagcgtgacttaacataggtaaaaaaatacactaatgcatgttaagttgcgt 2154324  T
Q  279 aaggccattttagacttttactttaggaat 308  Q
    | || ||||||   |||||||||| |||||    
T  2154323 agggacattttgatcttttactttgggaat 2154294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 18394910 - 18394979
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaa 271  Q
    ||||||||||||| ||| |||||| | | | |||||||||||| ||| ||||||||||||||||||||||    
T  18394910 aatacactagcgcgtgttaagtcacgtagcttgacttaacataggtaaaaaatacactagcgcatgttaa 18394979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 202 - 271
Target Start/End: Original strand, 42121933 - 42122002
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaa 271  Q
    ||||||||||||||||| |||||| | |  ||||||||||||| ||| ||||||||||| ||||||||||    
T  42121933 aatacactagcgcatgttaagtcacgtagtgtgacttaacataggtaaaaaatacactaacgcatgttaa 42122002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 42121866 - 42121954
Alignment:
Q  187 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaa--tacactagcgcatgttaagt 273  Q
    |||| ||||| ||| |||||||||||||| ||  |||||  | |||||||||||| || ||| ||||  ||||||||||||||||||||    
T  42121866 ttaactcacgctcagaatacactagcgcaagttcagtcacactacgtgacttaacttaggtaaaaaaaatacactagcgcatgttaagt 42121954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 9e-38; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 180 - 340
Target Start/End: Original strand, 30362795 - 30362955
Alignment:
Q  180 gcgtaacttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgca 279  Q
    |||| |||||||||||| ||||||||||||||||||| | |||||| | |||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  30362795 gcgtgacttaagtcacgctcataatacactagcgcatcttaagtcacgtaacgtgacttaacataagtacataatacactagcacatgttaagttgcgca 30362894  T
Q  280 aggccattttagacttttactttaggaataaacgaaacgatttgggtaaagaggagaattc 340  Q
     |  ||||||  |||||||||||| |||| | |||||||||||   ||||||| |||||||    
T  30362895 tgagcattttgaacttttactttaagaatgagcgaaacgatttaaataaagagcagaattc 30362955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 227 - 344
Target Start/End: Complemental strand, 42548273 - 42548157
Alignment:
Q  227 gcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactttaggaataaacgaaacgatttgggt 326  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||| | |  ||||| |||||||||||| ||||| | | |||||||||||||    
T  42548273 gcaacatgacttaacataagtacaaaatacgctagcgcatgttaagttgcgc-atgaaattttggacttttactttgggaatgagcaaaacgatttgggt 42548175  T
Q  327 aaagaggagaattcttac 344  Q
    || ||| |||||||||||    
T  42548174 aatgagcagaattcttac 42548157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 192 - 273
Target Start/End: Complemental strand, 38791050 - 38790969
Alignment:
Q  192 tcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagt 273  Q
    ||||| ||| |||||||||||||| || |||||| || |||||||||||| || ||||||||||||||||||||||||||||    
T  38791050 tcacgctcagaatacactagcgcaagttaagtcacgctacgtgacttaacttaggtacaaaatacactagcgcatgttaagt 38790969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 202 - 340
Target Start/End: Original strand, 1537186 - 1537324
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactt 301  Q
    ||||||| |||| |||| |||| | | | |||||||||||||| ||| ||||||||||||||||||||||  |||||| || ||||||  || |||||||    
T  1537186 aatacaccagcgtatgttaagtaacgtagcgtgacttaacataggtaaaaaatacactagcgcatgttaacatgcgcaggggcattttgaacatttactt 1537285  T
Q  302 taggaataaacgaaacgatttgggtaaagaggagaattc 340  Q
    |  |||| ||||| ||  ||||||||| ||| |||||||    
T  1537286 tgagaatgaacgatactgtttgggtaatgagcagaattc 1537324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 187 - 273
Target Start/End: Complemental strand, 48211984 - 48211897
Alignment:
Q  187 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagt-acaaaatacactagcgcatgttaagt 273  Q
    |||| ||||| ||| |||||||||||||| || ||||||| | |||||||||||| || || | ||||||||||||||||||||||||    
T  48211984 ttaactcacgctcagaatacactagcgcaagttaagtcatactacgtgacttaacttaggtaagaaaatacactagcgcatgttaagt 48211897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 48211918 - 48211812
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactt 301  Q
    ||||||||||||||||| |||||| | |||  |  |||||||||||| ||||||||||| | ||||||||  |||||| || ||||||| |  |||||||    
T  48211918 aatacactagcgcatgttaagtcacgtaacacggtttaacataagtaaaaaatacactaacacatgttaacatgcgcatggacattttaaaaatttactt 48211819  T
Q  302 taggaat 308  Q
    |||||||    
T  48211818 taggaat 48211812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 270
Target Start/End: Original strand, 31826114 - 31826182
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgtta 270  Q
    |||||||||||||| || |||||| || |||||||||||| ||  || ||||||||||||||| |||||    
T  31826114 aatacactagcgcaagttaagtcacgctacgtgacttaacttagataaaaaatacactagcgcttgtta 31826182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 269
Target Start/End: Original strand, 26502371 - 26502438
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgtt 269  Q
    |||||||| |||||||| ||| || | | ||||||||||||||| |||| | ||||||||||||||||    
T  26502371 aatacactggcgcatgttaagccacgtagcgtgacttaacataaatacagattacactagcgcatgtt 26502438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 269
Target Start/End: Complemental strand, 26590343 - 26590276
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgtt 269  Q
    |||||||| |||||||| ||| || | | ||||||||||||||| |||| | ||||||||||||||||    
T  26590343 aatacactggcgcatgttaagccacgtagcgtgacttaacataaatacagattacactagcgcatgtt 26590276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 47068195 - 47068294
Alignment:
Q  180 gcgtaacttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgca 279  Q
    |||| |||||||||||| ||||||||||||||||||||| |||||| |  ||||||||||||||||||||| |||||| ||||| |||||||||||||||    
T  47068195 gcgtgacttaagtcacgctcataatacactagcgcatgttaagtcacgttacgtgacttaacataagtacataatacattagcgtatgttaagttgcgca 47068294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 53824428 - 53824322
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactt 301  Q
    ||||||||||||||||| |||||| | | |||||||||||||| ||| ||| ||||||||||||||||||  |||||| || ||||| || | |||||||    
T  53824428 aatacactagcgcatgttaagtcacgtagcgtgacttaacataggtaaaaattacactagcgcatgttaacatgcgcatgggcatttcagtcatttactt 53824329  T
Q  302 taggaat 308  Q
    | |||||    
T  53824328 tgggaat 53824322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 187 - 343
Target Start/End: Original strand, 2325485 - 2325642
Alignment:
Q  187 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataag-tacaaaatacactagcgcatgttaagttgcgcaaggcca 285  Q
    |||| ||||| ||| |||||||||||||| || |||||| || | ||||| |||| | || |||||||||||||||||||||||||  |||| | || ||    
T  2325485 ttaactcacgctcaaaatacactagcgcaagttaagtcacgctatgtgacataactttaggtacaaaatacactagcgcatgttaacatgcgtagggaca 2325584  T
Q  286 ttttagacttttactttaggaataaacgaaacgatttgggtaaagaggagaattctta 343  Q
    ||||| ||||||||||| |||||  ||||||| |||| | ||| ||  ||||||||||    
T  2325585 ttttaaacttttactttgggaatggacgaaaccatttagataatgaccagaattctta 2325642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 187 - 343
Target Start/End: Complemental strand, 44833629 - 44833467
Alignment:
Q  187 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaac-----gtgacttaacataagtacaaaatac-actagcgcatgttaagttgcgcaa 280  Q
    |||| ||||| ||| |||||||||||||| || |||||| || ||     ||||||||||||||||| | | ||| |||||| ||||||||  |||| |     
T  44833629 ttaactcacgctcagaatacactagcgcaagttaagtcacgctacgtagggtgacttaacataagtatagattacaactagcacatgttaatatgcgtag 44833530  T
Q  281 ggccattttagacttttactttaggaataaacgaaacgatttgggtaaagaggagaattctta 343  Q
    || |||||| |||||||||||| | |||||||| ||| |||||||||| ||| ||||||||||    
T  44833529 gggcattttggacttttactttggaaataaacggaaccatttgggtaatgagcagaattctta 44833467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 35485383 - 35485275
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagt--acaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttac 299  Q
    ||||||||||||||||| |||||| | |||||||||||||||| ||  | |||||| |||||||||||||||  || ||| || ||||||| || |||||    
T  35485383 aatacactagcgcatgttaagtcacgtaacgtgacttaacataggtaaaaaaaatatactagcgcatgttaacatgtgcaggggcattttaaacatttac 35485284  T
Q  300 tttaggaat 308  Q
    |||| ||||    
T  35485283 tttaagaat 35485275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 42387851 - 42387936
Alignment:
Q  187 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagt-acaaaatacactagcgcatgttaa 271  Q
    |||| ||||| ||| ||||||||||||||||| |||||| | | |||||||||||||| || | ||||||||||||||||||||||    
T  42387851 ttaactcacgctcagaatacactagcgcatgttaagtcacgtagcgtgacttaacataggtaaaaaaatacactagcgcatgttaa 42387936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 202 - 302
Target Start/End: Complemental strand, 42947514 - 42947413
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatac-actagcgcatgttaagttgcgcaaggccattttagacttttact 300  Q
    ||||||||||||||||| || ||| | | |||||||||||||||||||| | ||| |||||||||||||||  |||| | |  |||||| ||||||||||    
T  42947514 aatacactagcgcatgttaaatcaggtagcgtgacttaacataagtacatattacaactagcgcatgttaacatgcgtaggagcattttggacttttact 42947415  T
Q  301 tt 302  Q
    ||    
T  42947414 tt 42947413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 187 - 273
Target Start/End: Complemental strand, 35485449 - 35485362
Alignment:
Q  187 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaa-tacactagcgcatgttaagt 273  Q
    |||| ||||| ||| |||||||||||||| || |||||| || |||| ||||||| || ||| |||| ||||||||||||||||||||    
T  35485449 ttaactcacgctcagaatacactagcgcaggttaagtcacgctacgtaacttaacttaggtaaaaaaatacactagcgcatgttaagt 35485362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 187 - 271
Target Start/End: Complemental strand, 42993719 - 42993635
Alignment:
Q  187 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaa 271  Q
    |||| ||||| ||| |||||||||| ||| || |||||| | | |||||||| ||||| ||  ||||||||||||||||||||||    
T  42993719 ttaactcacgctcagaatacactagtgcaagttaagtcacgtagcgtgactttacataggttaaaaatacactagcgcatgttaa 42993635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 16967853 - 16967942
Alignment:
Q  187 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaa---tacactagcgcatgttaagt 273  Q
    |||| ||||| ||| ||||||||||||||  | |||||| || |||||||||||| || ||| ||||   ||||||||||||||||||||    
T  16967853 ttaactcacgctcagaatacactagcgcaaattaagtcacgctacgtgacttaacttaggtaaaaaaaaatacactagcgcatgttaagt 16967942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 273
Target Start/End: Complemental strand, 53824496 - 53824407
Alignment:
Q  187 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaa---tacactagcgcatgttaagt 273  Q
    |||| ||||| ||| ||||||||||||||  | |||||| || |||||||||||| || ||| ||||   ||||||||||||||||||||    
T  53824496 ttaactcacgctcagaatacactagcgcaacttaagtcacgctacgtgacttaacttaggtaaaaaaaaatacactagcgcatgttaagt 53824407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 42947536 - 42947495
Alignment:
Q  230 acgtgacttaacataagtacaaaatacactagcgcatgttaa 271  Q
    |||||||||||| || ||| ||||||||||||||||||||||    
T  42947536 acgtgacttaacttaggtaaaaaatacactagcgcatgttaa 42947495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 202 - 340
Target Start/End: Complemental strand, 39650334 - 39650196
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactt 301  Q
    ||||||||||||||||| |||||| | | |||||||||||||| ||| ||||||||||||||||||||||  |||| | || |||||| ||| |||||||    
T  39650334 aatacactagcgcatgttaagtcacgtagcgtgacttaacataggtagaaaatacactagcgcatgttaacatgcgtaggggcattttggacatttactt 39650235  T
Q  302 taggaataaacgaaacgatttgggtaaagaggagaattc 340  Q
    ||||||| | |||||| |||| ||||| ||| |||||||    
T  39650234 taggaatgagcgaaaccatttaggtaatgagcagaattc 39650196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 187 - 273
Target Start/End: Complemental strand, 47485593 - 47485505
Alignment:
Q  187 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagt--acaaaatacactagcgcatgttaagt 273  Q
    |||| ||||| ||| |||||||||||||| || |||||| || |||||||||||| || ||  | ||||||||||||||||||||||||    
T  47485593 ttaactcacgctcagaatacactagcgcaagttaagtcacgctacgtgacttaacttaggtaaaaaaaatacactagcgcatgttaagt 47485505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 273
Target Start/End: Complemental strand, 39650402 - 39650313
Alignment:
Q  187 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaa---tacactagcgcatgttaagt 273  Q
    |||| ||||| ||| |||||||||| ||| || |||||| || |||||||||||| || ||| ||||   ||||||||||||||||||||    
T  39650402 ttaactcacgctcagaatacactagagcaagttaagtcacgctacgtgacttaacttaggtaaaaaaaaatacactagcgcatgttaagt 39650313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 45690987 - 45691114
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaataca-ctagcgcatgttaagttgcgcaaggccattttagacttttact 300  Q
    ||||||||||||||||| |||||| | | |  ||||||||||||||||| | || | ||||| ||||||||  || | | || |||||| ||||||||||    
T  45690987 aatacactagcgcatgttaagtcacgtagctagacttaacataagtacacattataactagctcatgttaacatgtgtaggggcattttggacttttact 45691086  T
Q  301 ttaggaataaacgaaacgatttgggtaa 328  Q
    || ||||| | |||||| ||||| ||||    
T  45691087 ttgggaatgagcgaaaccatttgagtaa 45691114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 8e-20; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 202 - 323
Target Start/End: Complemental strand, 53265931 - 53265809
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatac-actagcgcatgttaagttgcgcaaggccattttagacttttact 300  Q
    ||||||||||||||||| |||||| | | |||||||||||||||||||||| ||| |||||||||||||||  |||| | |  |||||| || |||||||    
T  53265931 aatacactagcgcatgttaagtcacgtagcgtgacttaacataagtacaaattacaactagcgcatgttaacatgcgtaggagcattttggaattttact 53265832  T
Q  301 ttaggaataaacgaaacgatttg 323  Q
    |||||||| | |||||| |||||    
T  53265831 ttaggaatgagcgaaaccatttg 53265809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 202 - 302
Target Start/End: Complemental strand, 28796758 - 28796658
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactt 301  Q
    ||||||||||||||||| |||||||| | ||||||||||||||  || ||||||||||||||| ||||||  ||| || || |||||| ||| |||||||    
T  28796758 aatacactagcgcatgttaagtcatgtagcgtgacttaacatagataaaaaatacactagcgcgtgttaacatgcacatggacattttggacatttactt 28796659  T
Q  302 t 302  Q
    |    
T  28796658 t 28796658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 187 - 273
Target Start/End: Complemental strand, 53265996 - 53265910
Alignment:
Q  187 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagt 273  Q
    |||| ||||| ||| || ||||||||||| || |||||| || |||||||||||| || ||| ||||||||||||||||||||||||    
T  53265996 ttaactcacgctcagaacacactagcgcaagttaagtcacgctacgtgacttaacttaggtataaaatacactagcgcatgttaagt 53265910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 187 - 271
Target Start/End: Complemental strand, 33161783 - 33161699
Alignment:
Q  187 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaa 271  Q
    |||| ||||| ||| ||||||||||||||||| ||||||   | |||||||||||||| ||| |||||||||||| |||||||||    
T  33161783 ttaactcacgctcagaatacactagcgcatgttaagtcacatagcgtgacttaacataggtaaaaaatacactagtgcatgttaa 33161699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 303
Target Start/End: Complemental strand, 46814007 - 46813892
Alignment:
Q  187 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacata-agtacaaaatacactagcgcatgttaagttgcgcaaggcca 285  Q
    |||| ||||| ||||||| ||||||||||||| |||||||| | |||||||||||||| |  | ||||||||||| ||||||||||  |||| | || ||    
T  46814007 ttaactcacgctcataatgcactagcgcatgttaagtcatgtagcgtgacttaacatagataaaaaaatacactaacgcatgttaatatgcgtaggggca 46813908  T
Q  286 ttttagacttttacttta 303  Q
      ||||||||||||||||    
T  46813907 --ttagacttttacttta 46813892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 308
Target Start/End: Original strand, 36174503 - 36174625
Alignment:
Q  187 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatac-actagcgcatgttaagttgcgcaaggcca 285  Q
    |||| ||||| ||| |||||||||||||| || |||||| | | |||||||||||||||||||| | ||| ||| |||||||||||  |||| |  | ||    
T  36174503 ttaactcacgctcagaatacactagcgcaagttaagtcacgtagcgtgacttaacataagtacatattacaactggcgcatgttaacatgcgtagtggca 36174602  T
Q  286 ttttagacttttactttaggaat 308  Q
    |||| || ||||||||| |||||    
T  36174603 ttttggatttttactttgggaat 36174625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 314
Target Start/End: Original strand, 47043928 - 47044041
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaa-tacactagcgcatgttaagttgcgcaaggccattttagacttttact 300  Q
    ||||||||||||||||| || ||| | | || ||||||||||| ||| |||| ||||||||| ||||||||  |||||| || ||||||  |  ||||||    
T  47043928 aatacactagcgcatgttaactcacgtagcgcgacttaacataggtaaaaaaatacactagcacatgttaacatgcgcaggggcattttgaatatttact 47044027  T
Q  301 ttaggaataaacga 314  Q
    |||||||| |||||    
T  47044028 ttaggaatgaacga 47044041  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 337
Target Start/End: Original strand, 40312731 - 40312869
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtaca---aaatacactagcgcatgttaagttgcgcaaggccattttagactttta 298  Q
    |||| |||||||||||| |||||| | | |||||| |||||||||||||    | ||||||||||||||||||  | || |||   ||||||||||||||    
T  40312731 aatatactagcgcatgttaagtcacgtagcgtgacctaacataagtacatactattacactagcgcatgttaacatacgtaagagtattttagactttta 40312830  T
Q  299 ctttaggaataaacgaaacgatttgggtaaagaggagaa 337  Q
    |||| | ||| | |||||  |||||||||| ||| ||||    
T  40312831 ctttggaaatgagcgaaatcatttgggtaatgagcagaa 40312869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 202 - 337
Target Start/End: Original strand, 40322807 - 40322945
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtaca---aaatacactagcgcatgttaagttgcgcaaggccattttagactttta 298  Q
    |||| |||||||||||| |||||| | | |||||| |||||||||||||    | ||||||||||||||||||  | || |||   ||||||||||||||    
T  40322807 aatatactagcgcatgttaagtcacgtagcgtgacctaacataagtacatactattacactagcgcatgttaacatacgtaagagtattttagactttta 40322906  T
Q  299 ctttaggaataaacgaaacgatttgggtaaagaggagaa 337  Q
    |||| | ||| | |||||  |||||||||| ||| ||||    
T  40322907 ctttggaaatgagcgaaatcatttgggtaatgagcagaa 40322945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 265
Target Start/End: Original strand, 42099431 - 42099510
Alignment:
Q  187 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataag-tacaaaatacactagcgca 265  Q
    |||| ||||||||| ||||||||||||||  | |||||| || |||||||||||| || | || ||||||||||||||||    
T  42099431 ttaactcacgttcagaatacactagcgcaacttaagtcacgctacgtgacttaacttaggttaaaaaatacactagcgca 42099510  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 231 - 273
Target Start/End: Original strand, 40312710 - 40312752
Alignment:
Q  231 cgtgacttaacataagtacaaaatacactagcgcatgttaagt 273  Q
    ||||||||||| || |||||||||| |||||||||||||||||    
T  40312710 cgtgacttaacttaggtacaaaatatactagcgcatgttaagt 40312752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 231 - 273
Target Start/End: Original strand, 40322786 - 40322828
Alignment:
Q  231 cgtgacttaacataagtacaaaatacactagcgcatgttaagt 273  Q
    ||||||||||| || |||||||||| |||||||||||||||||    
T  40322786 cgtgacttaacttaggtacaaaatatactagcgcatgttaagt 40322828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 887073 - 887161
Alignment:
Q  187 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagt--acaaaatacactagcgcatgttaagt 273  Q
    |||| ||||| ||| |||| ||||||||| || |||||| || |||||||||||| || ||  | ||||| ||||||||||||||||||    
T  887073 ttaactcacgctcagaataaactagcgcaagttaagtcacgctacgtgacttaacttaggtaaaaaaaattcactagcgcatgttaagt 887161  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 252 - 329
Target Start/End: Original strand, 1228030 - 1228106
Alignment:
Q  252 aatacactagcgcatgttaagttgcgcaaggccattttagacttttactttaggaataaacgaaacgatttgggtaaa 329  Q
    ||||||||||||||||||||||||||||  | |||||| ||  ||||| || ||||| | |||||| |||||||||||    
T  1228030 aatacactagcgcatgttaagttgcgcagaggcatttt-gaactttaccttgggaatgagcgaaacaatttgggtaaa 1228106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 273
Target Start/End: Complemental strand, 28796825 - 28796737
Alignment:
Q  187 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagt--acaaaatacactagcgcatgttaagt 273  Q
    |||| ||||| ||| || ||||||||||| || |||||| || |||||||||||| ||  |  | ||||||||||||||||||||||||    
T  28796825 ttaactcacgctcagaaaacactagcgcaagttaagtcacgctacgtgacttaacttagataaaaaaaatacactagcgcatgttaagt 28796737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1455 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold1455
Description:

Target: scaffold1455; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 313 - 419
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactt 301  Q
    ||||||| ||||||| | |||||| | | |||||||||||||||||||| | ||||||||||||||||||||   | |||| |||||| |||||||||||    
T  313 aatacaccagcgcatattaagtcacgtagcgtgacttaacataagtacagattacactagcgcatgttaagtcatgtaagggcattttggacttttactt 412  T
Q  302 taggaat 308  Q
    | |||||    
T  413 tgggaat 419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1455; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 202 - 273
Target Start/End: Original strand, 263 - 334
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagt 273  Q
    |||||||||||||| || |||||| | | |||||||||||||| ||||||||||||| ||||||| ||||||    
T  263 aatacactagcgcaagttaagtcacgtagcgtgacttaacataggtacaaaatacaccagcgcatattaagt 334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 14830530 - 14830424
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactt 301  Q
    ||||||||||||||||| |||||| | | |||||||||||||| ||| ||||||||||||||||||||||  || | | || |||||| ||| |||||||    
T  14830530 aatacactagcgcatgttaagtcacgtagcgtgacttaacataggtaaaaaatacactagcgcatgttaacatgtgtagggacattttggacatttactt 14830431  T
Q  302 taggaat 308  Q
    | |||||    
T  14830430 tgggaat 14830424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 202 - 289
Target Start/End: Complemental strand, 16444407 - 16444320
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccatttt 289  Q
    |||||| |||||||||| |||||||| | ||| |||||||||| ||| ||||||||||||||||||||||  |||||| || ||||||    
T  16444407 aatacattagcgcatgttaagtcatgtagcgtaacttaacataggtaaaaaatacactagcgcatgttaacatgcgcaggggcatttt 16444320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 202 - 341
Target Start/End: Complemental strand, 14153492 - 14153353
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactt 301  Q
    ||||||||||||||||| |||||| | | || |||| |||||| ||| ||||||||||||||||||||||  |||| | ||  ||||| | | |||||||    
T  14153492 aatacactagcgcatgttaagtcacgtagcgcgactaaacataggtaaaaaatacactagcgcatgttaacatgcgtaggggtattttggtcatttactt 14153393  T
Q  302 taggaataaacgaaacgatttgggtaaagaggagaattct 341  Q
    | ||||| | | |||  |||||||||| ||| ||||||||    
T  14153392 tgggaatgagcaaaatcatttgggtaatgagcagaattct 14153353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 273
Target Start/End: Complemental strand, 14153558 - 14153471
Alignment:
Q  187 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagt-acaaaatacactagcgcatgttaagt 273  Q
    |||| ||||| ||| | ||||||||||||  | |||||| || |||||||||| | ||||| | ||||||||||||||||||||||||    
T  14153558 ttaactcacgctcagactacactagcgcaacttaagtcacgctacgtgacttagcttaagttaaaaaatacactagcgcatgttaagt 14153471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 202 - 308
Target Start/End: Complemental strand, 1974294 - 1974188
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactt 301  Q
    ||||||||||||||||| ||||||   || | ||||||||||| ||| ||||||||||||||||||||||  ||||||||  |||||| ||| |||||||    
T  1974294 aatacactagcgcatgttaagtcacataatgcgacttaacataggtaaaaaatacactagcgcatgttaacatgcgcaagagcattttggacatttactt 1974195  T
Q  302 taggaat 308  Q
    | |||||    
T  1974194 tgggaat 1974188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 231 - 328
Target Start/End: Original strand, 19401967 - 19402065
Alignment:
Q  231 cgtgacttaacataagtacaaaataca-ctagcgcatgttaagttgcgcaaggccattttagacttttactttaggaataaacgaaacgatttgggtaa 328  Q
    |||||||||||||||||||||| |||| ||||||||||||||  |||| | || |||||| ||||||||||||  |||| |  ||||| ||||||||||    
T  19401967 cgtgacttaacataagtacaaattacaactagcgcatgttaacatgcgtatgggcattttggacttttactttgagaatgagtgaaaccatttgggtaa 19402065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 40017292 - 40017398
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactt 301  Q
    |||||||||||| || | |||||| | || |||||| |||||| ||| ||||||||||||| ||||||||  |||| |||| |||||||||| |||| ||    
T  40017292 aatacactagcgaattttaagtcacgtaatgtgactcaacataggtaaaaaatacactagcacatgttaacctgcgtaaggacattttagacatttattt 40017391  T
Q  302 taggaat 308  Q
    | |||||    
T  40017392 tgggaat 40017398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 202 - 307
Target Start/End: Original strand, 3461524 - 3461629
Alignment:
Q  202 aatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagacttttactt 301  Q
    |||||| ||||| |||| |||||| | |||||||||||||||| ||| ||||| ||||||| |||||||| || |||| ||  ||||||||| |||| ||    
T  3461524 aatacattagcgtatgttaagtcacgtaacgtgacttaacataggtaaaaaatgcactagcacatgttaacttacgcaggggtattttagacatttattt 3461623  T
Q  302 taggaa 307  Q
    | ||||    
T  3461624 tgggaa 3461629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 215 - 273
Target Start/End: Complemental strand, 19401979 - 19401921
Alignment:
Q  215 atgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagt 273  Q
    |||| |||||| || |||||||||||| || |||||||||||||||||||| |||||||    
T  19401979 atgttaagtcacgctacgtgacttaacttaggtacaaaatacactagcgcaagttaagt 19401921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 198 - 273
Target Start/End: Original strand, 40017237 - 40017313
Alignment:
Q  198 tcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagt-acaaaatacactagcgcatgttaagt 273  Q
    |||||||||||||||||| || |||||| || |||||||||||| || || | |||||||||||||| || ||||||    
T  40017237 tcataatacactagcgcaagttaagtcacgctacgtgacttaacttaggtaaaaaaatacactagcgaattttaagt 40017313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 273
Target Start/End: Complemental strand, 1974360 - 1974273
Alignment:
Q  187 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacata-agtacaaaatacactagcgcatgttaagt 273  Q
    |||| ||||| ||| ||||||||||||||  | ||||||  | |||||||||||| || |  ||||||||||||||||||||||||||    
T  1974360 ttaactcacgctcagaatacactagcgcaacttaagtcacactacgtgacttaacttagacaacaaaatacactagcgcatgttaagt 1974273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 3461457 - 3461545
Alignment:
Q  187 ttaagtcacgttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagt--acaaaatacactagcgcatgttaagt 273  Q
    |||| ||||||||| ||||||||| |||| || |||||| || |||||||||||| || ||  | |||||||| ||||| |||||||||    
T  3461457 ttaactcacgttcagaatacactaacgcaagttaagtcacgctacgtgacttaacttaggtaaaaaaaatacattagcgtatgttaagt 3461545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 196 - 342
Target Start/End: Complemental strand, 69866 - 69720
Alignment:
Q  196 gttcataatacactagcgcatgtcaagtcatgcaacgtgacttaacataagtacaaaatacactagcgcatgttaagttgcgcaaggccattttagactt 295  Q
    ||||| |||||||| ||||||||||||||| | | | ||| |||||||||||||| ||||||||| || |||||||  || | |||| |||||| |||||    
T  69866 gttcaaaatacacttgcgcatgtcaagtcacgtagcatgatttaacataagtacataatacactaacgtatgttaacatgtgtaagg-cattttggactt 69768  T
Q  296 ttactttaggaataaacgaaa-cgatttgggtaaagaggagaattctt 342  Q
    ||||||| | ||| | ||||| | ||||| |||||||| | |||||||    
T  69767 ttactttggtaatgagcgaaaccaatttgagtaaagagcaaaattctt 69720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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