View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11861_high_22 (Length: 253)

Name: NF11861_high_22
Description: NF11861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11861_high_22
NF11861_high_22
[»] chr3 (21 HSPs)
chr3 (12-253)||(36827196-36827436)
chr3 (30-179)||(36279112-36279260)
chr3 (41-179)||(52318132-52318269)
chr3 (30-163)||(55389291-55389432)
chr3 (30-166)||(48808532-48808669)
chr3 (30-119)||(55388219-55388308)
chr3 (27-126)||(20464246-20464345)
chr3 (30-218)||(53958872-53959063)
chr3 (30-218)||(48573145-48573341)
chr3 (30-218)||(17700679-17700872)
chr3 (30-120)||(53957833-53957923)
chr3 (30-123)||(47117942-47118034)
chr3 (30-118)||(19114673-19114760)
chr3 (107-179)||(40206162-40206234)
chr3 (40-111)||(33837333-33837404)
chr3 (36-119)||(48809529-48809612)
chr3 (37-117)||(3693996-3694076)
chr3 (108-166)||(2591872-2591930)
chr3 (30-104)||(33427891-33427965)
chr3 (30-120)||(36280190-36280280)
chr3 (63-120)||(2323217-2323274)
[»] chr8 (29 HSPs)
chr8 (34-179)||(1952785-1952929)
chr8 (30-166)||(5737832-5737966)
chr8 (30-120)||(32898318-32898408)
chr8 (30-218)||(35177554-35177747)
chr8 (23-119)||(41122616-41122712)
chr8 (34-120)||(35178678-35178764)
chr8 (37-92)||(28526425-28526480)
chr8 (34-97)||(41754152-41754215)
chr8 (40-179)||(5965229-5965375)
chr8 (30-120)||(28619405-28619495)
chr8 (38-98)||(24199118-24199179)
chr8 (30-127)||(39138510-39138607)
chr8 (39-111)||(41121294-41121366)
chr8 (30-163)||(10406366-10406492)
chr8 (30-73)||(31074174-31074217)
chr8 (108-218)||(10407353-10407461)
chr8 (30-120)||(30134746-30134836)
chr8 (30-120)||(32564362-32564452)
chr8 (30-92)||(41754687-41754749)
chr8 (30-105)||(2561346-2561421)
chr8 (27-98)||(28006471-28006542)
chr8 (27-98)||(28063774-28063845)
chr8 (40-98)||(9625380-9625438)
chr8 (23-93)||(28524931-28525001)
chr8 (117-179)||(41122572-41122633)
chr8 (30-111)||(8569568-8569649)
chr8 (30-87)||(12637647-12637704)
chr8 (68-97)||(41754258-41754287)
chr8 (15-127)||(45476409-45476521)
[»] chr7 (33 HSPs)
chr7 (30-166)||(34707780-34707916)
chr7 (30-165)||(44334278-44334413)
chr7 (30-164)||(39708289-39708423)
chr7 (34-166)||(6680340-6680472)
chr7 (30-163)||(34710213-34710346)
chr7 (36-179)||(35728901-35729043)
chr7 (30-179)||(12223494-12223642)
chr7 (41-179)||(30924824-30924961)
chr7 (30-166)||(7259512-7259647)
chr7 (30-120)||(7258435-7258525)
chr7 (68-218)||(45583792-45583940)
chr7 (37-179)||(5929924-5930065)
chr7 (30-120)||(44333297-44333387)
chr7 (30-119)||(48788546-48788635)
chr7 (30-106)||(8048651-8048727)
chr7 (30-218)||(10898843-10899036)
chr7 (30-163)||(42477540-42477681)
chr7 (21-111)||(32793342-32793432)
chr7 (30-120)||(48777417-48777507)
chr7 (23-111)||(39824302-39824387)
chr7 (30-127)||(2677096-2677193)
chr7 (87-179)||(8047052-8047143)
chr7 (30-163)||(35727858-35727999)
chr7 (36-120)||(45584370-45584453)
chr7 (38-118)||(24934965-24935045)
chr7 (30-134)||(48647302-48647406)
chr7 (37-120)||(385006-385088)
chr7 (36-118)||(7509327-7509410)
chr7 (34-104)||(19433804-19433873)
chr7 (30-120)||(43457628-43457717)
chr7 (38-120)||(43461590-43461672)
chr7 (41-118)||(42478145-42478222)
chr7 (30-70)||(22621307-22621347)
[»] chr4 (16 HSPs)
chr4 (30-179)||(42278209-42278356)
chr4 (30-179)||(20599701-20599849)
chr4 (30-179)||(47874723-47874872)
chr4 (42-163)||(54574597-54574726)
chr4 (23-120)||(4701936-4702033)
chr4 (30-119)||(19050416-19050505)
chr4 (34-119)||(47878358-47878443)
chr4 (36-179)||(4703006-4703154)
chr4 (37-93)||(24745955-24746011)
chr4 (30-120)||(42391759-42391849)
chr4 (36-120)||(38216632-38216714)
chr4 (30-119)||(53770473-53770562)
chr4 (42-119)||(53770944-53771021)
chr4 (106-166)||(19051174-19051234)
chr4 (65-121)||(26170858-26170914)
chr4 (81-117)||(56041191-56041227)
[»] chr5 (28 HSPs)
chr5 (30-166)||(9537202-9537338)
chr5 (31-179)||(4593021-4593170)
chr5 (30-163)||(4593931-4594064)
chr5 (27-120)||(34173437-34173530)
chr5 (30-218)||(40611420-40611613)
chr5 (30-120)||(2464829-2464919)
chr5 (30-163)||(25590590-25590731)
chr5 (30-120)||(14891020-14891110)
chr5 (30-179)||(545851-545999)
chr5 (30-163)||(8075656-8075796)
chr5 (27-111)||(19271660-19271744)
chr5 (30-120)||(32640448-32640538)
chr5 (30-179)||(8074610-8074766)
chr5 (34-110)||(16979176-16979252)
chr5 (107-179)||(30970288-30970360)
chr5 (30-120)||(28590985-28591076)
chr5 (30-120)||(544808-544898)
chr5 (36-170)||(2466588-2466730)
chr5 (36-93)||(31946933-31946990)
chr5 (36-120)||(578625-578709)
chr5 (34-179)||(14889933-14890085)
chr5 (30-134)||(40612518-40612622)
chr5 (30-93)||(13651041-13651104)
chr5 (60-120)||(578030-578090)
chr5 (34-122)||(28589863-28589951)
chr5 (108-179)||(9537862-9537932)
chr5 (40-119)||(21069479-21069557)
chr5 (36-97)||(19183127-19183188)
[»] chr2 (34 HSPs)
chr2 (30-179)||(14704165-14704313)
chr2 (38-119)||(43380755-43380836)
chr2 (30-179)||(24458220-24458376)
chr2 (36-120)||(28864664-28864748)
chr2 (30-162)||(39016214-39016346)
chr2 (34-179)||(32765101-32765253)
chr2 (30-120)||(31443098-31443188)
chr2 (30-163)||(39015165-39015306)
chr2 (34-179)||(40000142-40000294)
chr2 (30-117)||(21732275-21732362)
chr2 (108-179)||(31442617-31442688)
chr2 (30-111)||(12003747-12003828)
chr2 (30-119)||(43381045-43381134)
chr2 (30-98)||(14887373-14887441)
chr2 (30-120)||(7412272-7412362)
chr2 (34-120)||(24459327-24459413)
chr2 (27-120)||(2910257-2910350)
chr2 (30-111)||(17330101-17330182)
chr2 (35-111)||(12010224-12010300)
chr2 (37-117)||(21733627-21733707)
chr2 (30-94)||(26585256-26585319)
chr2 (28-120)||(31090315-31090407)
chr2 (30-120)||(7073810-7073901)
chr2 (30-73)||(12746101-12746144)
chr2 (43-93)||(12011371-12011421)
chr2 (41-163)||(2911309-2911439)
chr2 (117-166)||(33162020-33162069)
chr2 (30-163)||(31091349-31091490)
chr2 (36-116)||(31442517-31442597)
chr2 (113-168)||(12004774-12004829)
chr2 (140-179)||(12010357-12010396)
chr2 (64-111)||(33163320-33163367)
chr2 (220-253)||(8040721-8040754)
chr2 (115-163)||(32766102-32766150)
[»] chr1 (26 HSPs)
chr1 (30-166)||(32665596-32665733)
chr1 (30-145)||(9339806-9339921)
chr1 (34-163)||(34088279-34088408)
chr1 (30-179)||(52439621-52439777)
chr1 (30-163)||(9340862-9340988)
chr1 (41-135)||(7944326-7944420)
chr1 (40-168)||(26518279-26518412)
chr1 (30-179)||(6612590-6612746)
chr1 (34-118)||(34085706-34085790)
chr1 (30-97)||(534424-534491)
chr1 (34-121)||(16249827-16249914)
chr1 (37-119)||(3117836-3117918)
chr1 (30-120)||(6613840-6613930)
chr1 (30-119)||(11830069-11830158)
chr1 (38-118)||(25038069-25038149)
chr1 (38-118)||(25043281-25043361)
chr1 (37-111)||(22856865-22856939)
chr1 (30-179)||(51450180-51450336)
chr1 (30-179)||(52440367-52440523)
chr1 (30-93)||(8975339-8975402)
chr1 (30-94)||(1407808-1407872)
chr1 (37-120)||(39726540-39726622)
chr1 (65-120)||(51453592-51453647)
chr1 (34-120)||(32664667-32664752)
chr1 (30-104)||(39977512-39977586)
chr1 (107-163)||(7945396-7945452)
[»] chr6 (6 HSPs)
chr6 (30-97)||(30748170-30748237)
chr6 (30-120)||(19600098-19600187)
chr6 (30-92)||(29856925-29856987)
chr6 (38-92)||(29845668-29845722)
chr6 (38-189)||(31239765-31239922)
chr6 (123-179)||(19600025-19600082)
[»] scaffold0039 (1 HSPs)
scaffold0039 (30-120)||(79253-79343)
[»] scaffold0767 (2 HSPs)
scaffold0767 (37-179)||(5784-5918)
scaffold0767 (41-166)||(6052-6185)
[»] scaffold0237 (2 HSPs)
scaffold0237 (30-92)||(3127-3189)
scaffold0237 (38-92)||(1873-1927)
[»] scaffold0016 (1 HSPs)
scaffold0016 (45-127)||(36391-36473)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 36827436 - 36827196
Alignment:
Q  12 gagaagaagtgtgaagtatcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaat 111  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  36827436 gagaaggagcgtgaagtatcacagggactaaagtgaaaatagaaaatgattattttggtccctgaatcgaaaatcaatatccccaaattgaatttcaaat 36827337  T
Q  112 tcctaaatctcaaattcttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaaacaacaacttgttgctaggtccctcactatac 211  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||| || |||||| ||| |||    
T  36827336 tcctaaatctcaaatccttaaatgtcaactaattctctcttttgttcaaaatcaaatctttcatt-aaacaacaacttgttgttatgtccctgactgtac 36827238  T
Q  212 atacttattatatgtttggttgcacggtgggtgcaccaaaac 253  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  36827237 atacttagtatatgtttagttgcacggtgggtgcaccaaaac 36827196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 36279112 - 36279260
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattct 129  Q
    |||||||||| ||||||||| ||||||||| ||| ||||||||| ||| | ||||  ||||||| |||||||||| |||||| ||||||||| |||| ||    
T  36279112 tcacagggaccaaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaaaaaatatccccaaattgaatatcaaatccctaaatcttaaatcct 36279211  T
Q  130 taaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    |||| |||| ||||||  || |||||||||||||| |||||| |||||||    
T  36279212 taaaagtcatctaattatcttttttgttcaaaatc-aatcttccattaaa 36279260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 179
Target Start/End: Complemental strand, 52318269 - 52318132
Alignment:
Q  41 aaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattcttaaatgtcaac 140  Q
    ||||||||| ||||||||| ||| ||||||||  ||| | |||| |||||||| |||||||||| |||||| ||||||||| |||| ||||||||||| |    
T  52318269 aaagtgaaagtagaaaatggtcactttggtccatgaaccaaaaaacaatatccccaaattgaatatcaaatccctaaatcttaaatccttaaatgtcatc 52318170  T
Q  141 taatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    |||||  || |||||||||||||| |||||| |||||||    
T  52318169 taattatcttttttgttcaaaatc-aatcttccattaaa 52318132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 55389432 - 55389291
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattccta--------aatct 121  Q
    |||||||||| ||||||||| ||||||||| ||| ||||||||| ||| ||||||||||||| | |||||||||| |||||||||||        |||||    
T  55389432 tcacagggaccaaagtgaaagtagaaaatggtcactttggtccctgaaccgaaaatcaatattcccaaattgaatatcaaattcctaaatccttaaatct 55389333  T
Q  122 caaattcttaaatgtcaactaatttcctcttttgttcaaaat 163  Q
    ||||| | ||||||||| ||||||  ||||||||||||||||    
T  55389332 caaatccctaaatgtcatctaattctctcttttgttcaaaat 55389291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 166
Target Start/End: Original strand, 48808532 - 48808669
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattct 129  Q
    |||||| ||| ||||||||| ||||||||| ||| ||||||||| ||| | ||||||||||| | |||||||||| |||||| ||||||||| |||| ||    
T  48808532 tcacagagaccaaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatattcccaaattgaatatcaaatccctaaatcttaaatcct 48808631  T
Q  130 taaatgtcaactaatt-tcctcttttgttcaaaatcaa 166  Q
    ||||| | | |||||| || | ||||| ||||||||||    
T  48808632 taaatattatctaattatctttttttgctcaaaatcaa 48808669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 55388219 - 55388308
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaat 119  Q
    |||||||||| ||||||||| ||||||||| ||| ||||||||| ||| | ||||||||||||| |||||||||| |||||| |||||||    
T  55388219 tcacagggaccaaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaat 55388308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 20464246 - 20464345
Alignment:
Q  27 gtatcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaat 126  Q
    ||||||||| ||||||| ||||| ||||||||| ||| ||||||||  ||||| ||||||||||||| ||| |||||  |||||| ||||||||||||||    
T  20464246 gtatcacagagactaaaatgaaagtagaaaatggtcactttggtccatgaatcaaaaatcaatatccccaatttgaacctcaaatccctaaatctcaaat 20464345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 218
Target Start/End: Complemental strand, 53959063 - 53958872
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaat-ctcaaat-- 126  Q
    |||||||||| ||||||||| ||||||||  ||| ||||| ||| ||| | ||||||||||| | |||||||||| |||||||||||||| || ||||      
T  53959063 tcacagggaccaaagtgaaagtagaaaattgtcactttggcccctgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatccttaaatct 53958964  T
Q  127 ----tcttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaaacaacaacttgttgctaggtccctcactatacatactta 218  Q
        |||||||||||| ||||||  |||||||||||||| |  |||||| |||||||   |||||||||||  |||||||| ||| | ||||||||    
T  53958963 caaatcttaaatgtcatctaattctctcttttgttcaaatt--aatcttccattaaa--cacaacttgttgtaaggtccctgactgtgcatactta 53958872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 218
Target Start/End: Original strand, 48573145 - 48573341
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcc--------taaatct 121  Q
    |||||||||| ||||||||| ||||||||| ||| |||| |||  ||| | ||||||||||| |  ||||||||| |||||||||        |||||||    
T  48573145 tcacagggaccaaagtgaaagtagaaaatggtcactttgatccatgaaccaaaaatcaatattccaaaattgaatatcaaattcctaaattcttaaatct 48573244  T
Q  122 caaattcttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa-acaacaacttgttgctaggtccctcactatacatactta 218  Q
    ||||| | ||||||||| ||||||  ||||||| ||||||||  || ||| ||||||| ||||||||||  || ||||||||| ||| ||||||||||    
T  48573245 caaatccctaaatgtcatctaattctctcttttattcaaaat-taaccttccattaaacacaacaacttactgttaggtccctgactgtacatactta 48573341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 218
Target Start/End: Original strand, 17700679 - 17700872
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcc--------taaatct 121  Q
    |||||||||| ||||||||| ||||||||| ||| ||||||||| |||   ||||||||||  |  ||||||||| |||||||||        |||||||    
T  17700679 tcacagggaccaaagtgaaagtagaaaatggtcactttggtccctgaacaaaaaatcaataatccaaaattgaatatcaaattcctaaattcttaaatct 17700778  T
Q  122 caaattcttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaaacaacaacttgttgctaggtccctcactatacatactta 218  Q
    ||||| |||||||||||  |||||  || |||||||||||||  |||||| |||||||   |||||||  || ||||||||| ||| ||||||||||    
T  17700779 caaatccttaaatgtcatataattctctattttgttcaaaat-taatcttccattaaa--cacaacttactgttaggtccctgactgtacatactta 17700872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 53957833 - 53957923
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||| ||||| ||||||||| ||||||||||| | ||| ||||  ||| | ||||||||||||| |||||||||| |||||| ||||||||    
T  53957833 tcacggggaccaaagtgaaagtagaaaatgattactttagtccatgaaccaaaaatcaatatccccaaattgaatgtcaaatccctaaatc 53957923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 47118034 - 47117942
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctca 123  Q
    ||||| ||||||||||||||||||||| || ||| ||| ||||| ||| | ||||||||||||| ||| |||||| || ||| |||||||||||    
T  47118034 tcacaaggactaaagtgaaaatagaaa-tggtcactttagtccctgaaccaaaaatcaatatccccaacttgaatctcgaatccctaaatctca 47117942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 118
Target Start/End: Original strand, 19114673 - 19114760
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaa 118  Q
    ||||| |||||||||||||| ||||||||| ||| |||  |||| ||||| ||||||||||||| ||| |||||| |||||| ||||||    
T  19114673 tcacaaggactaaagtgaaagtagaaaatggtcactttaatccctgaatcaaaaatcaatatcc-caacttgaatctcaaatccctaaa 19114760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 40206162 - 40206234
Alignment:
Q  107 caaattcctaaatctcaaattcttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    ||||| ||||||||||||||   ||||| ||| |||||||||||||| ||||||||| ||||||| |||||||    
T  40206162 caaatccctaaatctcaaatctctaaatctcatctaatttcctctttagttcaaaattaaatcttccattaaa 40206234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 33837333 - 33837404
Alignment:
Q  40 taaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaat 111  Q
    |||| ||||| ||||||||| ||| ||||||||| ||| | ||||||||||||| || ||||||||||||||    
T  33837333 taaaatgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatatccccagattgaatttcaaat 33837404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 48809612 - 48809529
Alignment:
Q  36 ggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaat 119  Q
    |||||||||||||| ||||||||| ||| |||| |||  ||| | ||||||||||| |  ||||||||| ||||||||||||||    
T  48809612 ggactaaagtgaaagtagaaaatggtcactttgatccatgaaccaaaaatcaatattcctaaattgaatatcaaattcctaaat 48809529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 3694076 - 3693996
Alignment:
Q  37 gactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaa 117  Q
    ||||||||||||| || |||||| ||| |||| |||| ||||  ||||| ||| |||||||||||||| |||||| |||||    
T  3694076 gactaaagtgaaagtacaaaatggtcactttgatccctgaataaaaaattaatctcctcaaattgaatctcaaatccctaa 3693996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 2591872 - 2591930
Alignment:
Q  108 aaattcctaaatctcaaattcttaaatgtcaactaatttcctcttttgttcaaaatcaa 166  Q
    |||||| ||||||||||||   ||||||||| ||||||  |||||||||||||||||||    
T  2591872 aaattcttaaatctcaaatctctaaatgtcatctaattctctcttttgttcaaaatcaa 2591930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 33427891 - 33427965
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaat 104  Q
    ||||| |||||||||||||| |||||||| |||| ||| | ||| ||| | ||||||||||||| ||| ||||||    
T  33427891 tcacatggactaaagtgaaagtagaaaattatcactttagcccctgaaccaaaaatcaatatccccaacttgaat 33427965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 36280280 - 36280190
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    ||||| |||| ||| |||||  |||||||| ||| ||| |||||  || | ||||||||||| | |||||||||| |||||||||||||||    
T  36280280 tcacacggaccaaaatgaaagaagaaaatggtcactttagtccctaaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatc 36280190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 2323217 - 2323274
Alignment:
Q  63 attttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    ||||||||||  ||||||||||| |||||||| |||||||||  ||||| ||||||||    
T  2323217 attttggtccttgaatcgaaaattaatatccttaaattgaatcacaaatccctaaatc 2323274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 179
Target Start/End: Complemental strand, 1952929 - 1952785
Alignment:
Q  34 agggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattcttaaa 133  Q
    |||||| ||||||||| ||||||||| ||| ||||||||| ||| | ||||||||||| | |||||||||| |||||| ||||||||| |||| ||||||    
T  1952929 agggaccaaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatatgcccaaattgaatatcaaatccctaaatcttaaatccttaaa 1952830  T
Q  134 tgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    ||||| ||||||  ||||||||||||||||| |||||| |||||||    
T  1952829 tgtcatctaattatctcttttgttcaaaatc-aatcttccattaaa 1952785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 5737966 - 5737832
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattct 129  Q
    ||||| |||||||||| ||| || |||||| ||| ||||||| |  |||| ||||||||||||| |||||||||| |||||| ||||||||||||||       
T  5737966 tcacatggactaaagtaaaagtaaaaaatggtcactttggtctctaaatcaaaaatcaatatccccaaattgaatctcaaatccctaaatctcaaat--c 5737869  T
Q  130 taaatgtcaactaatttcctcttttgttcaaaatcaa 166  Q
    ||||||||| ||||||  |||||||||||||||||||    
T  5737868 taaatgtcatctaattatctcttttgttcaaaatcaa 5737832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 32898408 - 32898318
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    ||||| |||| ||||||||| ||||||||| ||| ||||||||| ||| | |||||||||||||||||||||||| |||||| ||||||||    
T  32898408 tcacaaggaccaaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatatcctcaaattgaatatcaaatccctaaatc 32898318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 218
Target Start/End: Original strand, 35177554 - 35177747
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaat--------tcctaaatct 121  Q
    ||||| |||| ||||||||| ||||||||| | | ||||||||| ||| | ||||||| ||||| |||||||||| ||||||        ||||||||||    
T  35177554 tcacaaggaccaaagtgaaagtagaaaatggttactttggtccctgaaccaaaaatcagtatccccaaattgaatatcaaatccctaaattcctaaatct 35177653  T
Q  122 caaattcttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaaacaacaacttgttgctaggtccctcactatacatactta 218  Q
     |||| ||||||||||| ||||||  || |||||||||||||| ||||||  ||  ||||| |||| | ||| ||||||||| ||||| ||||||||    
T  35177654 taaatccttaaatgtcacctaattatcttttttgttcaaaatc-aatcttctat--aaacaccaacctattgttaggtccctgactatgcatactta 35177747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 41122712 - 41122616
Alignment:
Q  23 tgaagtatcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaat 119  Q
    |||||| |||||  ||||||||||||||||||||||  ||| |||| |||| ||| | ||||||||||||  |||||||||| ||||||||||||||    
T  41122712 tgaagtgtcacattgactaaagtgaaaatagaaaatcgtcactttgatccctgaaccaaaaatcaatatctccaaattgaatctcaaattcctaaat 41122616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 35178764 - 35178678
Alignment:
Q  34 agggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||||| ||||||||| ||||||||||||| ||||| ||| ||| | ||||||||||| | |||||||||| |||||||| ||||||    
T  35178764 agggaccaaagtgaaactagaaaatgatcactttggcccctgaaccaaaaatcaatattcccaaattgaatatcaaattcttaaatc 35178678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 92
Target Start/End: Complemental strand, 28526480 - 28526425
Alignment:
Q  37 gactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatc 92  Q
    |||||||||||||||||||||||||||||||||| |  ||| ||||||||||||||    
T  28526480 gactaaagtgaaaatagaaaatgatcattttggttcttgaaccgaaaatcaatatc 28526425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 41754152 - 41754215
Alignment:
Q  34 agggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaa 97  Q
    |||||||||||||||| || |||||  ||| ||||||||| |||||||||||||||||||||||    
T  41754152 agggactaaagtgaaagtaaaaaatagtcactttggtccctgaatcgaaaatcaatatcctcaa 41754215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 179
Target Start/End: Complemental strand, 5965375 - 5965229
Alignment:
Q  40 taaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaat--------tcctaaatctcaaattctta 131  Q
    |||||||||| ||||||||  |||||||||||   |||   ||||||||||||| |||||||||||||||||        |||||||||| |||| | ||    
T  5965375 taaagtgaaagtagaaaattgtcattttggtctatgaagtaaaaatcaatatccacaaattgaatttcaaatctctaaattcctaaatcttaaatcccta 5965276  T
Q  132 aatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    | ||||| ||||||  ||||||||||||||||| |||||| |||||||    
T  5965275 agtgtcatctaattatctcttttgttcaaaatc-aatcttccattaaa 5965229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 28619495 - 28619405
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    ||||| ||||||||  |||| ||||||||||||| |||  |||  ||| | ||||||||||||| ||||||||||||||||| ||||||||    
T  28619495 tcacatggactaaatcgaaagtagaaaatgatcactttaatccatgaaccaaaaatcaatatccccaaattgaatttcaaatccctaaatc 28619405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 98
Target Start/End: Original strand, 24199118 - 24199179
Alignment:
Q  38 actaaagtgaaaatagaaaatgatcattttggtccccgaatcg-aaaatcaatatcctcaaa 98  Q
    |||||||||||| || |||||||||||||||||||| |||||| ||||||||||||| ||||    
T  24199118 actaaagtgaaagtaaaaaatgatcattttggtccctgaatcgaaaaatcaatatccccaaa 24199179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 127
Target Start/End: Complemental strand, 39138607 - 39138510
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaatt 127  Q
    ||||| |||||||||||||| ||||||||| ||| |||| | |  | | ||||||||||||||| | |||||||| |||||| |||||||||| ||||    
T  39138607 tcacaaggactaaagtgaaagtagaaaatggtcactttgattcttgtaccgaaaatcaatatccccgaattgaatctcaaatccctaaatctcgaatt 39138510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 41121294 - 41121366
Alignment:
Q  39 ctaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaat 111  Q
    ||||||||||| ||||||||  ||| ||||||||  ||| | ||||||||||||| |||||||||||||||||    
T  41121294 ctaaagtgaaagtagaaaattgtcactttggtccttgaaccaaaaatcaatatccccaaattgaatttcaaat 41121366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 10406366 - 10406492
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattct 129  Q
    |||||||||| ||||||| | ||||||||  ||| ||||||| | ||| | |||||||||||   |||||||||| |||||||||||||||       |     
T  10406366 tcacagggaccaaagtgatagtagaaaatagtcactttggtctctgaaccaaaaatcaatatttccaaattgaatatcaaattcctaaatc-------cc 10406458  T
Q  130 taaatgtcaactaatttcctcttttgttcaaaat 163  Q
    ||||||||| ||||||  ||||||||||||||||    
T  10406459 taaatgtcatctaattctctcttttgttcaaaat 10406492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 31074174 - 31074217
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccc 73  Q
    |||| ||||||||||||||||||||||||||||| |||||||||    
T  31074174 tcacggggactaaagtgaaaatagaaaatgatcactttggtccc 31074217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 218
Target Start/End: Complemental strand, 10407461 - 10407353
Alignment:
Q  108 aaattcctaaatctcaaattcttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaaacaacaacttgttgctaggtccctcact 207  Q
    |||| |||||| || |||| ||||||||||| ||||||  ||||||||||||||||| |||||| |||| ||||| |||| ||||| ||||||| | |||    
T  10407461 aaatccctaaagcttaaatccttaaatgtcatctaattatctcttttgttcaaaatc-aatcttccatt-aaacaccaacctgttgttaggtccgtgact 10407364  T
Q  208 atacatactta 218  Q
     | ||||||||    
T  10407363 gttcatactta 10407353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 30134746 - 30134836
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||||| ||||||||||||| ||||||||  ||| ||||||||   || | ||||||||||| | ||||||||||||||||| | ||||||    
T  30134746 tcacagagactaaagtgaaagtagaaaattgtcactttggtcctttaaccaaaaatcaatattcacaaattgaatttcaaatccttaaatc 30134836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 32564452 - 32564362
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    ||||| |||||||||||| | ||||||||||||||||| |||||   | | ||||| ||||||| |  ||||||| |||||||||||||||    
T  32564452 tcacatggactaaagtgatagtagaaaatgatcattttagtcccttgaccaaaaatgaatatccccgtattgaatctcaaattcctaaatc 32564362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 41754749 - 41754687
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatc 92  Q
    ||||||||| |||||||||| || |||||| ||| ||||||||  ||||||||||||||||||    
T  41754749 tcacagggattaaagtgaaagtaaaaaatggtcactttggtccatgaatcgaaaatcaatatc 41754687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 2561346 - 2561421
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatt 105  Q
    |||||| ||||||| ||||| ||||||||  | |||||||| |  ||| |||||||||||||||| ||||||||||    
T  2561346 tcacagtgactaaaatgaaagtagaaaatagtgattttggttcttgaaccgaaaatcaatatcctaaaattgaatt 2561421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 28006542 - 28006471
Alignment:
Q  27 gtatcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaa 98  Q
    |||||||| ||||||||||||||||||||| || ||| ||||||| | |||   ||||||||||||| ||||    
T  28006542 gtatcacaaggactaaagtgaaaatagaaagtggtcactttggtcactgaactaaaaatcaatatccccaaa 28006471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 28063845 - 28063774
Alignment:
Q  27 gtatcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaa 98  Q
    |||||||| ||||||||||||||||||||| || ||| ||||||| | |||   ||||||||||||| ||||    
T  28063845 gtatcacaaggactaaagtgaaaatagaaagtggtcactttggtcactgaactaaaaatcaatatccccaaa 28063774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 9625380 - 9625438
Alignment:
Q  40 taaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaa 98  Q
    |||||||||| ||||||||| ||| ||| || |  ||||||||||||||||||||||||    
T  9625380 taaagtgaaagtagaaaatggtcactttagttcgtgaatcgaaaatcaatatcctcaaa 9625438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 28524931 - 28525001
Alignment:
Q  23 tgaagtatcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcc 93  Q
    |||||| ||| | |||||||||||||| || |||||  ||||||||||||  ||| |||||||||||||||    
T  28524931 tgaagtgtcagatggactaaagtgaaagtaaaaaattgtcattttggtccgtgaaccgaaaatcaatatcc 28525001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 41122633 - 41122572
Alignment:
Q  117 aatctcaaattcttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    |||||||||||| |||||| ||  ||||||| |||||||||||||||| |||||| |||||||    
T  41122633 aatctcaaattcctaaatgacacataatttcgtcttttgttcaaaatc-aatcttccattaaa 41122572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 8569568 - 8569649
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaat 111  Q
    ||||| |||||||| |||||  | ||||| ||||||||| |||| |||   ||||||||||||| |||||||||| ||||||    
T  8569568 tcacatggactaaaatgaaaggaaaaaattatcattttgatccctgaactaaaaatcaatatccacaaattgaatctcaaat 8569649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 12637704 - 12637647
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatca 87  Q
    ||||| |||||||||||||| ||||| ||||||| ||||||||| |||  ||||||||    
T  12637704 tcacatggactaaagtgaaagtagaatatgatcactttggtccctgaactgaaaatca 12637647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 97
Target Start/End: Original strand, 41754258 - 41754287
Alignment:
Q  68 ggtccccgaatcgaaaatcaatatcctcaa 97  Q
    ||||||||||||||||||||||||||||||    
T  41754258 ggtccccgaatcgaaaatcaatatcctcaa 41754287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 45476521 - 45476409
Alignment:
Q  15 aagaagtgtgaagtatcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcc 114  Q
    ||||||| ||| || ||| | |||| ||||| ||| ||||||||| ||| ||| ||||| ||| | ||||||||||| | |||||| ||| ||||||  |    
T  45476521 aagaagtatgatgtgtcatatggaccaaagtaaaagtagaaaatggtcactttagtccctgaaccaaaaatcaatattcccaaattaaatctcaaatctc 45476422  T
Q  115 taaatctcaaatt 127  Q
    |||||| ||||||    
T  45476421 taaatcccaaatt 45476409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 30 - 166
Target Start/End: Original strand, 34707780 - 34707916
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattct 129  Q
    ||||||||| ||||||||||||||||||||| || |||| |||  | | | ||||| ||||||| ||| ||||||||||||| |||||||||||||||||    
T  34707780 tcacagggaataaagtgaaaatagaaaatgaacactttgttccatggaccaaaaattaatatccccaagttgaatttcaaatccctaaatctcaaattct 34707879  T
Q  130 taaatgtcaactaatttcctcttttgttcaaaatcaa 166  Q
    |||||||||  |||||  |||||||||||||||||||    
T  34707880 taaatgtcatataattctctcttttgttcaaaatcaa 34707916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 165
Target Start/End: Complemental strand, 44334413 - 44334278
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattct 129  Q
    ||||| |||| ||||||||| ||||||||  ||| ||||||||  ||| | ||||||||||||| |||||||||| |||||| ||||||||| |||||||    
T  44334413 tcacatggaccaaagtgaaagtagaaaatagtcactttggtccatgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatcttaaattct 44334314  T
Q  130 taaatgtcaactaatttcctcttttgttcaaaatca 165  Q
    ||||||||| ||||||  ||||||||||||||||||    
T  44334313 taaatgtcatctaattatctcttttgttcaaaatca 44334278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 30 - 164
Target Start/End: Original strand, 39708289 - 39708423
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattct 129  Q
    ||||| |||||  ||||||| ||||||||| ||| ||||| |||  || | ||||||||||| ||||||||||||||||||| ||||||||| |||||||    
T  39708289 tcacatggactgtagtgaaagtagaaaatggtcactttggaccctaaaccaaaaatcaatattctcaaattgaatttcaaatccctaaatcttaaattct 39708388  T
Q  130 taaatgtcaactaatttcctcttttgttcaaaatc 164  Q
    ||||||||| ||||||  |||||||||||||||||    
T  39708389 taaatgtcatctaattctctcttttgttcaaaatc 39708423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 166
Target Start/End: Complemental strand, 6680472 - 6680340
Alignment:
Q  34 agggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattcttaaa 133  Q
    |||||||||||||||| ||||||||  ||||||| |||||  || | ||||||||||||| |||||||||||| |||||| |||||||||||| | ||||    
T  6680472 agggactaaagtgaaagtagaaaatagtcattttagtccctaaaccaaaaatcaatatccccaaattgaattttaaattcataaatctcaaatccctaaa 6680373  T
Q  134 tgtcaactaatttcctcttttgttcaaaatcaa 166  Q
    | ||| ||||||  |||||||||||||||||||    
T  6680372 tatcatctaattctctcttttgttcaaaatcaa 6680340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 34710346 - 34710213
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattct 129  Q
    |||||| ||||||||||||| || |||||  | | |||| |||| ||||| |||||||| ||||||||||||||||| ||| |||||||| |||||| ||    
T  34710346 tcacagagactaaagtgaaagtaaaaaattgttactttgatccctgaatcaaaaatcaacatcctcaaattgaattttaaaatcctaaatttcaaatcct 34710247  T
Q  130 taaatgtcaactaatttcctcttttgttcaaaat 163  Q
    ||||||||| ||||||  ||||||||||||||||    
T  34710246 taaatgtcatctaattctctcttttgttcaaaat 34710213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 179
Target Start/End: Complemental strand, 35729043 - 35728901
Alignment:
Q  36 ggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattcttaaatg 135  Q
    |||| ||||||||| |||||| || ||| ||||||||| ||| | ||||||||||| | |||||||||| | |||| ||||||||| |||| ||||||||    
T  35729043 ggaccaaagtgaaagtagaaagtggtcactttggtccctgaaccaaaaatcaatattcccaaattgaatattaaatccctaaatcttaaatccttaaatg 35728944  T
Q  136 tcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    ||| ||||||  ||||||||||||||||| |||||| |||||||    
T  35728943 tcatctaattatctcttttgttcaaaatc-aatcttccattaaa 35728901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 179
Target Start/End: Complemental strand, 12223642 - 12223494
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattct 129  Q
    ||||||| |||||||||||| || |||||  ||| |||| |||  ||| | ||||||||||||| |||||||||| |||||| ||||||| |||||| |     
T  12223642 tcacaggaactaaagtgaaagtaaaaaattgtcactttgatccttgaaccaaaaatcaatatccccaaattgaatctcaaatccctaaatttcaaatcca 12223543  T
Q  130 taaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    ||||||||| |||||| ||||||| |||||||||| |||||| |||||||    
T  12223542 taaatgtcatctaattacctctttagttcaaaatc-aatcttccattaaa 12223494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 179
Target Start/End: Complemental strand, 30924961 - 30924824
Alignment:
Q  41 aaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattcttaaatgtcaac 140  Q
    ||||||||| ||||||||| ||| |||| ||   ||| | ||||||||||||| |||||||||| |||||| ||||||||| |||| ||||||||||| |    
T  30924961 aaagtgaaagtagaaaatggtcactttgatctatgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatcttaaatccttaaatgtcatc 30924862  T
Q  141 taatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    |||||  || |||||||||||||| |||||| |||||||    
T  30924861 taattatcttttttgttcaaaatc-aatcttccattaaa 30924824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 7259647 - 7259512
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattct 129  Q
    ||||| |||| ||||||||| ||||||||| ||| ||||||||| ||| | ||||| ||||||| |||||||||| |||||| ||||||||| |||| ||    
T  7259647 tcacaaggaccaaagtgaaa-tagaaaatggtcactttggtccctgaaccaaaaattaatatccccaaattgaatatcaaatccctaaatcttaaatcct 7259549  T
Q  130 taaatgtcaactaatttcctcttttgttcaaaatcaa 166  Q
    ||||||||  ||||||  || ||||| ||||||||||    
T  7259548 taaatgtcctctaattatcttttttgctcaaaatcaa 7259512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 7258435 - 7258525
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||||||||| ||||||||| ||||||||| ||| ||||||||| ||| | ||||||||||| | |||||||||| |||||||||||||||    
T  7258435 tcacagggaccaaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatc 7258525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 218
Target Start/End: Original strand, 45583792 - 45583940
Alignment:
Q  68 ggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattcttaaatgtcaactaatttcctcttttgttcaaaatcaaa 167  Q
    |||||| ||| | ||||||||||||| |||||||||| |||||| ||||||||| |||| ||| ||||||| ||||||  || ||||| |||||||| ||    
T  45583792 ggtccctgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatcttaaatcctttaatgtcatctaattatcttttttgatcaaaatc-aa 45583890  T
Q  168 tctttcattaaaacaacaacttgttgctaggtccctcactatacatactta 218  Q
    |||| |||| ||||| ||||||  || ||||||||| ||||| ||||||||    
T  45583891 tcttccatt-aaacaccaacttactgttaggtccctgactatgcatactta 45583940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 37 - 179
Target Start/End: Complemental strand, 5930065 - 5929924
Alignment:
Q  37 gactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattcttaaatgt 136  Q
    ||||||||||||| |  |||||||||| |||| |||| | ||| ||||||||||| | |||||||||| ||||||  ||||||||||||| | |||||||    
T  5930065 gactaaagtgaaagttaaaaatgatcactttgatccctggatcaaaaatcaatattcccaaattgaatctcaaatctctaaatctcaaatccataaatgt 5929966  T
Q  137 caactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    ||  |||||  ||||||  ||||||||| | ||||||||||||    
T  5929965 catttaattctctctttcattcaaaatc-agtctttcattaaa 5929924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 44333297 - 44333387
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||||||||| || |||||| ||||||||| ||| ||||||||| ||| | ||||||||||| | |||||||||| |||||||||||||||    
T  44333297 tcacagggaccaacgtgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatc 44333387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 48788635 - 48788546
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaat 119  Q
    ||||| |||| ||||||||| ||||||||| ||| ||||||||| ||| | ||||||||||| | |||||||||| ||||||||||||||    
T  48788635 tcacaaggaccaaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatattcacaaattgaatatcaaattcctaaat 48788546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 8048727 - 8048651
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaattt 106  Q
    ||||| |||||||||||||| ||||||||| ||| ||||||||| ||| ||||||| ||||||| ||||||||||||    
T  8048727 tcacatggactaaagtgaaagtagaaaatggtcactttggtccctgaaccgaaaattaatatccacaaattgaattt 8048651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 218
Target Start/End: Complemental strand, 10899036 - 10898843
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaa--------atct 121  Q
    |||||||||| |||| |||| ||||||||| ||| ||||||||  ||| | ||||||||||| | |||||||||| ||||||||||||        ||||    
T  10899036 tcacagggaccaaagagaaagtagaaaatggtcactttggtccttgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaattcttacatct 10898937  T
Q  122 caaattcttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaaacaacaacttgttgctaggtccctcactatacatactta 218  Q
    ||||| | ||||||||| ||||||  ||| ||||||||||||  |||||| |||||||   |||||||  || ||||||||| ||||| ||||||||    
T  10898936 caaatccctaaatgtcatctaattctctcatttgttcaaaat-taatcttccattaaa--cacaacttactgttaggtccctgactatgcatactta 10898843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 42477540 - 42477681
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcc--------taaatct 121  Q
    |||||||||| ||||||||| ||||||||||||| ||||||||| ||| | ||||  ||||| | || ||||||| |||||||||        |||||||    
T  42477540 tcacagggaccaaagtgaaagtagaaaatgatcactttggtccctgaaccaaaaactaatattcccatattgaatatcaaattcctaaatacttaaatct 42477639  T
Q  122 caaattcttaaatgtcaactaatttcctcttttgttcaaaat 163  Q
    ||||| | ||||||||| ||||||  ||||||||||||||||    
T  42477640 caaatccctaaatgtcatctaattctctcttttgttcaaaat 42477681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 32793342 - 32793432
Alignment:
Q  21 tgtgaagtatcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaat 111  Q
    ||||| || ||||| |||||||||||||| || |||||||||||||||||||| ||||| ||||| |||||||  ||| ||||| ||||||    
T  32793342 tgtgaggtgtcacatggactaaagtgaaagtaaaaaatgatcattttggtccctgaatcaaaaatgaatatccctaaaatgaatctcaaat 32793432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 48777417 - 48777507
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctc-aaattgaatttcaaattcctaaatc 120  Q
    |||||||||| ||||||||||||||||||| ||| |||| | || ||| | ||||||||||||| | |||||||||||||||| ||||||||    
T  48777417 tcacagggaccaaagtgaaaatagaaaatggtcactttgattcctgaa-ccaaaatcaatatccccaaaattgaatttcaaatccctaaatc 48777507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 39824302 - 39824387
Alignment:
Q  23 tgaagtatcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaat 111  Q
    |||||| |||||||||||||||||||| ||||||||| ||| ||| | ||| ||||   |||||||||| | |||||||||||||||||    
T  39824302 tgaagtgtcacagggactaaagtgaaagtagaaaatggtcactttagcccctgaat---aaatcaatattcccaaattgaatttcaaat 39824387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 2677096 - 2677193
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaatt 127  Q
    ||||| |||||||||||||| ||||||||||||| |||| |||| |||   |||||||||||||  ||||| ||| |||||| |||| ||||| ||||    
T  2677096 tcacatggactaaagtgaaagtagaaaatgatcactttgttccctgaactaaaaatcaatatccctaaattaaatctcaaatccctagatctcgaatt 2677193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 8047052 - 8047143
Alignment:
Q  87 aatatcctcaaattgaatttcaaattcctaaatctcaaattcttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    ||||||| |||||||||||| |||| ||||||||||||||   ||||| ||| ||||||  ||||||||||||| ||| ||| ||||||||||    
T  8047052 aatatccccaaattgaattttaaatccctaaatctcaaatcactaaatatcatctaattatctcttttgttcaatatc-aatatttcattaaa 8047143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 35727858 - 35727999
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaat--------tcctaaatct 121  Q
    |||||||||| ||||||| | ||||||||| ||| |||| |||   || | ||||||||||| | |||||||||| ||||||        ||||||||||    
T  35727858 tcacagggaccaaagtgatagtagaaaatggtcactttgatcctttaaccaaaaatcaatattcccaaattgaatatcaaatttctaaattcctaaatct 35727957  T
Q  122 caaattcttaaatgtcaactaatttcctcttttgttcaaaat 163  Q
    ||||| | ||||||||| ||||||  ||||||||||||||||    
T  35727958 caaatccctaaatgtcatctaattctctcttttgttcaaaat 35727999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 45584453 - 45584370
Alignment:
Q  36 ggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||| ||||||||  ||||||||| ||| ||||||||| ||| | ||||||||||| | |||||||||| |||||||||||||||    
T  45584453 ggaccaaagtgaatgtagaaaatggtcactttggtccctgaacc-aaaatcaatattcccaaattgaatatcaaattcctaaatc 45584370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 24934965 - 24935045
Alignment:
Q  38 actaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaa 118  Q
    |||||||||||| ||||||||| ||| |||| ||||  || ||||||||||||| |  ||||||||| |||||| ||||||    
T  24934965 actaaagtgaaagtagaaaatggtcactttgatccctaaaccgaaaatcaatattcctaaattgaatctcaaatccctaaa 24935045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 48647406 - 48647302
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattct 129  Q
    ||||| |||| ||||||||| ||||||||| ||| ||| ||||| ||| | ||||||||||| | ||||||||||  ||||| |||| ||| | || |||    
T  48647406 tcacaaggaccaaagtgaaagtagaaaatggtcactttcgtccctgaaccaaaaatcaatatgcccaaattgaataccaaatccctatatccctaaatct 48647307  T
Q  130 taaat 134  Q
    |||||    
T  48647306 taaat 48647302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 385006 - 385088
Alignment:
Q  37 gactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    ||||||||||||| ||||||||  ||| |||| ||   ||||||||||||||||||| |||||| ||| |||||||| ||||||    
T  385006 gactaaagtgaaagtagaaaattgtcactttgatctatgaatcgaaaatcaatatcc-caaattaaatctcaaattcttaaatc 385088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 118
Target Start/End: Complemental strand, 7509410 - 7509327
Alignment:
Q  36 ggactaaagtgaaaatagaaaatga-tcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaa 118  Q
    |||||||||||||| |||||||  | ||| |||||||||  || | ||||||||||||| |||||||||| |||||| ||||||    
T  7509410 ggactaaagtgaaagtagaaaaatagtcactttggtccctaaaccaaaaatcaatatccccaaattgaatctcaaatccctaaa 7509327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 104
Target Start/End: Complemental strand, 19433873 - 19433804
Alignment:
Q  34 agggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaat 104  Q
    |||||||||||||||  ||||||||| |||||||||| || |||   ||||||||||||| ||||||||||    
T  19433873 agggactaaagtgaag-tagaaaatggtcattttggttcctgaactaaaaatcaatatccccaaattgaat 19433804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 43457628 - 43457717
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||||| ||||||||||||| || |||||| ||| ||||||||| | | | |||||||||||||  ||||||||| |||||| | ||||||    
T  43457628 tcacagagactaaagtgaaagtaaaaaatggtcactttggtccctg-accaaaaatcaatatccctaaattgaatctcaaatccttaaatc 43457717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 43461672 - 43461590
Alignment:
Q  38 actaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||||||||||| || |||||| ||| |||| |||| ||| | |||||||||||||   |||||||| |||||| ||||||||    
T  43461672 actaaagtgaaagtaaaaaatggtcactttgatccctgaaccaaaaatcaatatccctcaattgaatctcaaatccctaaatc 43461590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 42478222 - 42478145
Alignment:
Q  41 aaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaa 118  Q
    ||||||||| ||||||||| ||| ||||||||  |||   ||||||||||||| | |||||||| |||||| ||||||    
T  42478222 aaagtgaaagtagaaaatggtcactttggtccatgaacaaaaaatcaatatcccctaattgaatatcaaatccctaaa 42478145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 22621307 - 22621347
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggt 70  Q
    ||||| |||||||||||||| ||||||||||||| ||||||    
T  22621307 tcacaaggactaaagtgaaagtagaaaatgatcactttggt 22621347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 42278209 - 42278356
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattct 129  Q
    |||||||||| ||||||||| ||||||||| ||| ||||||||| ||| | ||||||||||||| |||||||||| |||||| ||||||||| |||| ||    
T  42278209 tcacagggaccaaagtgaaactagaaaatggtcactttggtccctgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatcttaaatcct 42278308  T
Q  130 taaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    ||| ||||| ||||| | || ||||||||||||| ||||||| |||||||    
T  42278309 taactgtcatctaatat-cttttttgttcaaaat-aaatcttccattaaa 42278356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 179
Target Start/End: Complemental strand, 20599849 - 20599701
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattct 129  Q
    |||||||||||||| ||||| || |||||| ||| ||||||||| ||| | ||||| ||||| | |||||||||| ||||||||||||||| |||||       
T  20599849 tcacagggactaaaatgaaagtaaaaaatggtcactttggtccctgaaccaaaaattaatattcccaaattgaatctcaaattcctaaatcgcaaatctc 20599750  T
Q  130 taaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    ||||||||| ||||||  ||||||||||||||||| |||||| |||||||    
T  20599749 taaatgtcatctaattctctcttttgttcaaaatc-aatcttccattaaa 20599701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 47874723 - 47874872
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattct 129  Q
    |||||||||| ||||||||| || |||||| ||| ||||||||  ||| | |||||||||||||  ||||||||| |||||| ||||||||| |||| ||    
T  47874723 tcacagggaccaaagtgaaagtataaaatggtcactttggtccttgaaccaaaaatcaatatcccaaaattgaatatcaaatccctaaatcttaaatcct 47874822  T
Q  130 taaatgtcaactaatt-tcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    |||||||||  ||||| || | |||||||||||||| |||||| |||||||    
T  47874823 taaatgtcatataattatctttttttgttcaaaatc-aatcttccattaaa 47874872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 163
Target Start/End: Original strand, 54574597 - 54574726
Alignment:
Q  42 aagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcc--------taaatctcaaattcttaaa 133  Q
    |||||||| ||||||||||||| |||| |||||||| | |||||||| || |||||||||||| |||||||||        |||||||||||| | ||||    
T  54574597 aagtgaaagtagaaaatgatcactttgatccccgaaccaaaaatcaaaattctcaaattgaatatcaaattcctaactccttaaatctcaaatccctaaa 54574696  T
Q  134 tgtcaactaatttcctcttttgttcaaaat 163  Q
    ||||| ||||||  |||||| |||||||||    
T  54574697 tgtcatctaattctctctttagttcaaaat 54574726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 4701936 - 4702033
Alignment:
Q  23 tgaagtatcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||||| ||||| |||||||||||||| ||||||||  ||| ||||||||| ||| | ||| |||||||||| ||||||||| ||||||  |||||||    
T  4701936 tgaagtgtcacatggactaaagtgaaagtagaaaatagtcactttggtccctgaaacaaaagtcaatatcctaaaattgaatctcaaatctctaaatc 4702033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 19050416 - 19050505
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaat 119  Q
    ||||| |||||||||||||| || |||||||||| ||||||||  ||| | |||||||||||||  ||||||||| |||||| |||||||    
T  19050416 tcacatggactaaagtgaaagtataaaatgatcactttggtccttgaagcaaaaatcaatatccctaaattgaatctcaaatccctaaat 19050505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 47878443 - 47878358
Alignment:
Q  34 agggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaat 119  Q
    |||||| ||||||||| ||||||||| ||| ||||||||| ||| | ||||||||||| |  ||||||||| ||||||||||||||    
T  47878443 agggaccaaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatattccaaaattgaatatcaaattcctaaat 47878358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 179
Target Start/End: Complemental strand, 4703154 - 4703006
Alignment:
Q  36 ggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaat-tc-------ctaaatctcaaatt 127  Q
    |||||||||||||| || |||||  ||| ||||||||| ||  | ||||||||||||| |||||||||| |||||| ||       |||||||||||||     
T  4703154 ggactaaagtgaaagtataaaattgtcactttggtccctgacccaaaaatcaatatccccaaattgaatctcaaatctctgaatcactaaatctcaaatc 4703055  T
Q  128 cttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    | |||||||||  |||||  ||||||||||||||||| |||||| |||||||    
T  4703054 cctaaatgtcatttaatt--ctcttttgttcaaaatc-aatcttccattaaa 4703006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 24746011 - 24745955
Alignment:
Q  37 gactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcc 93  Q
    |||||||||||||||||||||| |||| ||||||||| ||| || |||| |||||||    
T  24746011 gactaaagtgaaaatagaaaattatcactttggtccctgaaccggaaattaatatcc 24745955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 42391849 - 42391759
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    ||||| |||||||||||||| ||||||||| ||| ||| ||||| |||   |||||  ||||| ||||||||| | |||||| ||||||||    
T  42391849 tcacatggactaaagtgaaagtagaaaatggtcactttagtccctgaactaaaaattcatatcttcaaattgagtctcaaatccctaaatc 42391759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 120
Target Start/End: Original strand, 38216632 - 38216714
Alignment:
Q  36 ggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||||||||||||| ||  ||||| ||  |||||| || ||||||| |||||||||||  ||||||||| |||||| ||||||||    
T  38216632 ggactaaagtgaaagta--aaatggtccctttggttcctgaatcgataatcaatatcccaaaattgaatatcaaatccctaaatc 38216714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 53770473 - 53770562
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaat 119  Q
    |||||| ||||||| ||||||||||||||| ||| ||| ||| |  || |  |||||||||||| ||| |||||| |||||| |||||||    
T  53770473 tcacagagactaaaatgaaaatagaaaatggtcactttagtcactaaagcagaaatcaatatccccaacttgaatatcaaatccctaaat 53770562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 53771021 - 53770944
Alignment:
Q  42 aagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaat 119  Q
    |||||||| ||||||||  ||| ||| ||| ||||| | ||||||||||||| ||| |||||| |||||| |||||||    
T  53771021 aagtgaaagtagaaaattgtcactttagtctccgaaccaaaaatcaatatccccaacttgaatctcaaatccctaaat 53770944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 19051234 - 19051174
Alignment:
Q  106 tcaaattcctaaatctcaaattcttaaatgtcaactaatttcctcttttgttcaaaatcaa 166  Q
    |||||| ||||||||||||||   ||||||||| ||| ||  |||||||||||||||||||    
T  19051234 tcaaatccctaaatctcaaatctctaaatgtcatctagttcgctcttttgttcaaaatcaa 19051174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 26170858 - 26170914
Alignment:
Q  65 tttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatct 121  Q
    |||| |||| ||| ||||||||||||| | |||||||||||| |||| |||||||||    
T  26170858 tttgatccctgaaccgaaaatcaatattcccaaattgaatttgaaatccctaaatct 26170914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 56041191 - 56041227
Alignment:
Q  81 aaaatcaatatcctcaaattgaatttcaaattcctaa 117  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  56041191 aaaatcaatatccacaaattgaatttcaaatccctaa 56041227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 166
Target Start/End: Original strand, 9537202 - 9537338
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattct 129  Q
    |||||| ||||||||||||| ||||||||  ||| |||| |||| ||||| ||||||||||||| |||||||||| |||||| ||||||||| |||| |     
T  9537202 tcacagtgactaaagtgaaagtagaaaatagtcactttgatccctgaatcaaaaatcaatatccccaaattgaatctcaaatccctaaatctaaaatcca 9537301  T
Q  130 taaatgtcaactaatttcctcttttgttcaaaatcaa 166  Q
    ||||||||| ||||||  |||||||||||||| ||||    
T  9537302 taaatgtcatctaattctctcttttgttcaaagtcaa 9537338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 31 - 179
Target Start/End: Original strand, 4593021 - 4593170
Alignment:
Q  31 cacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaa--ttcctaaatctcaaattc 128  Q
    ||||||||| ||||||||| ||||||||| ||| ||||||||| ||| | ||||||||||| | |||||||||  | |||  | ||||||||| ||||||    
T  4593021 cacagggaccaaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatatgcccaaattgaaaataaaaaatccctaaatcttaaattc 4593120  T
Q  129 ttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    |||||||||| ||||||  ||||||||||||||||| ||||||||||||||    
T  4593121 ttaaatgtcatctaattatctcttttgttcaaaatc-aatctttcattaaa 4593170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 4594064 - 4593931
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattct 129  Q
    |||||||||| ||||||||| ||||||||| ||||  | ||||  ||| | ||||||||||| | |||||||||| ||||||||||||||||||||| |     
T  4594064 tcacagggaccaaagtgaaagtagaaaatggtcatcgtagtccatgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatctcaaatccc 4593965  T
Q  130 taaatgtcaactaatttcctcttttgttcaaaat 163  Q
    ||||||||| ||||||  ||||||||||||||||    
T  4593964 taaatgtcatctaattatctcttttgttcaaaat 4593931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 34173437 - 34173530
Alignment:
Q  27 gtatcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    ||||||||||||||||| ||||| ||||||||||||| ||||||| | ||| | ||||||||||||| |||||||||||||||||  |||||||    
T  34173437 gtatcacagggactaaactgaaagtagaaaatgatcactttggtctctgaaccaaaaatcaatatccccaaattgaatttcaaatcactaaatc 34173530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 218
Target Start/End: Original strand, 40611420 - 40611613
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcc--------taaatct 121  Q
    |||||||||| ||||||||| ||||||||| ||| || |||||| ||| | ||||||||||| | |||||||||| |||||||||        |||||||    
T  40611420 tcacagggaccaaagtgaaagtagaaaatggtcacttgggtccctgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatccttaaatct 40611519  T
Q  122 caaattcttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaaacaacaacttgttgctaggtccctcactatacatactta 218  Q
    ||||| | |||||||||  |||||  ||||||||||||||||  ||||||||||||||   |||||||  || ||||||||| ||| ||||||||||    
T  40611520 caaatccctaaatgtcatataattctctcttttgttcaaaat-taatctttcattaaa--cacaacttagtgttaggtccctgactgtacatactta 40611613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 2464829 - 2464919
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||||||||| ||||||||| ||||||||| ||| ||||||||| ||| | ||||||||||||| |||||||||| |||||| ||||||||    
T  2464829 tcacagggaccaaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatc 2464919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 25590590 - 25590731
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcc--------taaatct 121  Q
    |||||||||| ||||||||| ||||||||| ||| ||||||| | ||| | ||||||||||| | |||||||||| |||||||||        |||||||    
T  25590590 tcacagggaccaaagtgaaagtagaaaatggtcactttggtctctgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatccttaaatct 25590689  T
Q  122 caaattcttaaatgtcaactaatttcctcttttgttcaaaat 163  Q
    ||||| | ||||||||| ||||||  ||||||||||||||||    
T  25590690 caaatccataaatgtcatctaattctctcttttgttcaaaat 25590731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 14891110 - 14891020
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    ||||| |||| ||||||| | ||||||||| ||| ||| ||||| ||||| ||||||||||| | ||||||||||||||||||||||||||    
T  14891110 tcacaaggaccaaagtgatagtagaaaatggtcactttagtccctgaatcaaaaatcaatattcccaaattgaatttcaaattcctaaatc 14891020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 179
Target Start/End: Complemental strand, 545999 - 545851
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattct 129  Q
    ||||| |||| ||||||||| ||||||||  ||| ||||||||  ||| | ||||||||||| | ||||||||||  ||||| ||||||||| ||||  |    
T  545999 tcacaaggaccaaagtgaaagtagaaaatagtcactttggtccttgaaccaaaaatcaatatgcccaaattgaataacaaatccctaaatcttaaatcgt 545900  T
Q  130 taaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    ||||||||| ||||||  |||||||||||  |||| |||||| |||||||    
T  545899 taaatgtcatctaattatctcttttgttctgaatc-aatcttccattaaa 545851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 8075796 - 8075656
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaatt--------cctaaatct 121  Q
    ||||| |||| ||||||||| | ||||||||||| ||||||||| ||| | ||||||||||| | |||||||||| |||||||        |||||||||    
T  8075796 tcacaaggaccaaagtgaaagtcgaaaatgatcactttggtccctgaaccaaaaatcaatattcccaaattgaatatcaaattcctatatccctaaatct 8075697  T
Q  122 caaattcttaaatgtcaactaatttcctcttttgttcaaaat 163  Q
    |||| || ||||||||| ||||||  ||||||||||||||||    
T  8075696 caaa-tcctaaatgtcatctaattctctcttttgttcaaaat 8075656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 19271744 - 19271660
Alignment:
Q  27 gtatcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaat 111  Q
    |||||| | |||||||||||||| |||||||||||||||||| ||||  || ||||||||||||||  ||| |||||||||||||    
T  19271744 gtatcatatggactaaagtgaaagtagaaaatgatcattttgatccctaaaccgaaaatcaatatctccaagttgaatttcaaat 19271660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 32640448 - 32640538
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||||||||| ||||||||| ||||||||| ||| ||||||||  ||| | ||||||||||| |  ||||||||| |||||||||||||||    
T  32640448 tcacagggaccaaagtgaaagtagaaaatggtcactttggtccttgaaccaaaaatcaatattccaaaattgaatatcaaattcctaaatc 32640538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 8074610 - 8074766
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcc--------taaatct 121  Q
    ||||||| || ||||||||| ||||||||| ||| ||||||||| ||| | ||||||||||| | |||||||||| |||||| ||        |||||||    
T  8074610 tcacaggtaccaaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatatgcccaaattgaatatcaaatccccaaatccctaaatct 8074709  T
Q  122 caaattcttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
     ||||  |||||||||| ||||||  ||||| ||||||||||| |||||| |||||||    
T  8074710 taaatctttaaatgtcatctaattatctcttctgttcaaaatc-aatcttacattaaa 8074766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 16979176 - 16979252
Alignment:
Q  34 agggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaa 110  Q
    ||||||||||||||| ||| |||||| ||| |||||| || ||||| |||||||||||||||||| ||||| |||||    
T  16979176 agggactaaagtgaagataaaaaatggtcactttggttcctgaatcaaaaatcaatatcctcaaactgaatctcaaa 16979252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 30970288 - 30970360
Alignment:
Q  107 caaattcctaaatctcaaattcttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    |||||||||||||||||||||| |||||||||   ||||  || ||||||||||||||||||||| |||||||    
T  30970288 caaattcctaaatctcaaattcctaaatgtcatacaattctctattttgttcaaaatcaaatcttgcattaaa 30970360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 28591076 - 28590985
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaa-tcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||||||||| ||||||||| ||||||||| ||| ||||||||| ||| | |||| ||||||| | |||||||||| |||||||| ||||||    
T  28591076 tcacagggaccaaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaaatcaatattcccaaattgaatatcaaattcttaaatc 28590985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 544808 - 544898
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||||||||  ||||||||| ||||||||  |||||| ||| || ||| | ||||||||||| | |||||||||| |||||||||||||||    
T  544808 tcacagggatcaaagtgaaagtagaaaatagtcatttgggttcctgaaccaaaaatcaatattcccaaattgaatatcaaattcctaaatc 544898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 170
Target Start/End: Complemental strand, 2466730 - 2466588
Alignment:
Q  36 ggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaatt--------cctaaatctcaaatt 127  Q
    |||| ||||||||| ||||||||  ||||||||||||| ||| | ||| ||||||| | |||||||||| |||||||        | ||||||||||||     
T  2466730 ggaccaaagtgaaagtagaaaatagtcattttggtccctgaaccaaaattcaatattcccaaattgaatatcaaattcttaaatccttaaatctcaaatc 2466631  T
Q  128 cttaaatgtcaactaatttcctcttttgttcaaaatcaaatct 170  Q
    | ||||||||| ||||||  || ||||||||||||| ||||||    
T  2466630 cctaaatgtcatctaattctcttttttgttcaaaattaaatct 2466588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 31946990 - 31946933
Alignment:
Q  36 ggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcc 93  Q
    |||||||||||||| || |||||| ||| ||||||||| |||||||||||||||||||    
T  31946990 ggactaaagtgaaagtaaaaaatggtcactttggtccctgaatcgaaaatcaatatcc 31946933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 578709 - 578625
Alignment:
Q  36 ggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||||||| ||||| || | |||||||| ||||||||| ||| |||||||||||||||  ||||||||| ||| ||| |||||||    
T  578709 ggactaaaatgaaagtaaagaatgatcactttggtccctgaaccgaaaatcaatatccctaaattgaatctcagatttctaaatc 578625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 179
Target Start/End: Original strand, 14889933 - 14890085
Alignment:
Q  34 agggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttc--------aaattcctaaatctcaaa 125  Q
    |||||| ||||| ||| ||||||||| ||| ||||||||| ||| | ||||||||||| | |||||||||| ||        |||| ||||||||| |||    
T  14889933 agggaccaaagtaaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatatgcccaaattgaatatcaattcgctaaatccctaaatcttaaa 14890032  T
Q  126 ttcttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    | ||||||||||| ||| ||   |||||||||||||||| |||||| |||||||    
T  14890033 tccttaaatgtcatctagttatttcttttgttcaaaatc-aatcttccattaaa 14890085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 40612622 - 40612518
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattct 129  Q
    ||||| |||| ||||||||| ||||||||| | | ||||||||| ||| | ||||||||||| | ||||||||||  ||||| |||||||| | || |||    
T  40612622 tcacaaggaccaaagtgaaagtagaaaatggttactttggtccctgaaccaaaaatcaatatgcccaaattgaataacaaatccctaaatccctaaatct 40612523  T
Q  130 taaat 134  Q
    |||||    
T  40612522 taaat 40612518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 13651104 - 13651041
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcc 93  Q
    |||||||||||||||||||| || |||||| ||| ||| ||||| ||| |||||||||||||||    
T  13651104 tcacagggactaaagtgaaagtaaaaaatggtcactttagtccctgaaccgaaaatcaatatcc 13651041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 578030 - 578090
Alignment:
Q  60 atcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||| ||||||||  ||||||||||||||||| ||||||||| || ||||||| |||||||    
T  578030 atcaatttggtcctagaatcgaaaatcaatattctcaaattggatctcaaatttctaaatc 578090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 28589863 - 28589951
Alignment:
Q  34 agggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctc 122  Q
    |||||| ||||| ||| ||||||||| ||| ||||||||| ||| | ||||||||||| |  ||||||||| ||||||  |||||||||    
T  28589863 agggaccaaagtaaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatataccaaaattgaatatcaaatcactaaatctc 28589951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 179
Target Start/End: Complemental strand, 9537932 - 9537862
Alignment:
Q  108 aaattcctaaatctcaaattcttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    |||| |||||||||||||||| ||||||| | ||||||  ||| ||||||||||||| |||||| |||||||    
T  9537932 aaatccctaaatctcaaattcctaaatgttatctaattctctcctttgttcaaaatc-aatcttccattaaa 9537862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 21069479 - 21069557
Alignment:
Q  40 taaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaat 119  Q
    |||||||||| ||||||||| |||||| | |||| |||  |||||||||||| ||||| |||||| |||||| |||||||    
T  21069479 taaagtgaaagtagaaaatggtcattt-gatccctgaactgaaaatcaatattctcaacttgaatctcaaatccctaaat 21069557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 19183127 - 19183188
Alignment:
Q  36 ggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaa 97  Q
    |||||||||||||| || |||||| | | |||| || | |||||||||||||||||||||||    
T  19183127 ggactaaagtgaaagtaaaaaatggtgactttgctctctgaatcgaaaatcaatatcctcaa 19183188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 14704165 - 14704313
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattct 129  Q
    |||||||||| ||||||||| ||||||||  ||| ||||||||  ||| | ||||||||||||| |||||||||| |||||| ||||||||| |||| ||    
T  14704165 tcacagggaccaaagtgaaagtagaaaatagtcactttggtccatgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatcttaaatcct 14704264  T
Q  130 taaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    ||||||||| ||||||   | |||||||||||||| |||||| |||||||    
T  14704265 taaatgtcatctaattatattttttgttcaaaatc-aatcttccattaaa 14704313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 43380755 - 43380836
Alignment:
Q  38 actaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaat 119  Q
    |||||||||||| ||||||||| ||| ||||||||| ||| | ||||||||||||| |||||||||||||||||||||||||    
T  43380755 actaaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaatcaatatccccaaattgaatttcaaattcctaaat 43380836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 24458220 - 24458376
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttc--------aaattcctaaatct 121  Q
    |||||||||| ||||||||| ||||||||| ||| |||||||||  |||| |||||||||||||||||||||||| ||        |||| ||||||| |    
T  24458220 tcacagggaccaaagtgaaagtagaaaatggtcactttggtccctcaatcaaaaatcaatatcctcaaattgaatatcagatccctaaatccctaaattt 24458319  T
Q  122 caaattcttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
     |||| ||||||||||| ||||||  || |||||||||||||| |||||| |||||||    
T  24458320 taaatccttaaatgtcatctaattatcttttttgttcaaaatc-aatcttccattaaa 24458376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 28864748 - 28864664
Alignment:
Q  36 ggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||||||||||||||||||||||||||||||| || || |||| |||||||||||| | ||| ||||||||||||| ||||||||    
T  28864748 ggactaaagtgaaaatagaaaatgatcattttagttccagaattgaaaatcaatattcccaagttgaatttcaaatccctaaatc 28864664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 39016346 - 39016214
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattct 129  Q
    ||||| |||| ||||||||| ||||||||  ||| ||||||||| ||| | ||||||||||| | |||||||||| | |||| ||||||||| |||| ||    
T  39016346 tcacatggaccaaagtgaaagtagaaaattgtcactttggtccctgaaccaaaaatcaatatgcccaaattgaatatgaaatccctaaatcttaaatcct 39016247  T
Q  130 taaatgtcaactaatttcctcttttgttcaaaa 162  Q
    ||||||||| ||||||  || ||||||||||||    
T  39016246 taaatgtcatctaattatctattttgttcaaaa 39016214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 179
Target Start/End: Original strand, 32765101 - 32765253
Alignment:
Q  34 agggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc--------tcaaa 125  Q
    |||||||||||||||| ||||||||| ||  ||||||||| ||| | ||||||||||||| |||||||||| |||||| ||||||||        | |||    
T  32765101 agggactaaagtgaaagtagaaaatggtcgctttggtccctgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatccctaaattttaaa 32765200  T
Q  126 ttcttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    | ||||||||||| ||||||  || |||||||||||||| |||||| |||||||    
T  32765201 tccttaaatgtcatctaattatcttttttgttcaaaatc-aatcttccattaaa 32765253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 31443188 - 31443098
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||||| ||||||||||||| ||||||||  |||||||||| || ||| ||||||||||||||  |||||| ||| |||||||||||||||    
T  31443188 tcacagtgactaaagtgaaagtagaaaattgtcattttggttcctgaaccgaaaatcaatatctccaaattaaatctcaaattcctaaatc 31443098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 39015165 - 39015306
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaatt--------cctaaatct 121  Q
    |||||||||| ||||||||| ||||||||| ||| ||||||||  ||| | ||||||||||| | |||||||||| |||||||        |||||||||    
T  39015165 tcacagggaccaaagtgaaagtagaaaatggtcagtttggtccttgaaccaaaaatcaatattcccaaattgaatatcaaattccaaaatccctaaatct 39015264  T
Q  122 caaattcttaaatgtcaactaatttcctcttttgttcaaaat 163  Q
    ||||| | ||||||||| ||||||  |||||||||| |||||    
T  39015265 caaatccctaaatgtcatctaattctctcttttgtttaaaat 39015306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 179
Target Start/End: Complemental strand, 40000294 - 40000142
Alignment:
Q  34 agggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaatt--------cctaaatctcaaa 125  Q
    |||||| ||||||||| ||||||||||||| ||||||||  ||| | ||||||||||| | |||||||||| |||||||        | |||||||||||    
T  40000294 agggaccaaagtgaaagtagaaaatgatcactttggtccttgaaccaaaaatcaatattcccaaattgaatatcaaatttctaaatccttaaatctcaaa 40000195  T
Q  126 ttcttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    | | ||| ||||| ||||||  ||||||||||||||||  ||||||||||||||    
T  40000194 tccataagtgtcatctaattctctcttttgttcaaaat-taatctttcattaaa 40000142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 21732275 - 21732362
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaa 117  Q
    |||| ||||||||||||||| ||||||||| ||| ||||||||| ||| | ||||| ||||||| |||||||||| |||||| |||||    
T  21732275 tcaccgggactaaagtgaaagtagaaaatggtcactttggtccctgaaccaaaaattaatatccccaaattgaatctcaaatccctaa 21732362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 31442617 - 31442688
Alignment:
Q  108 aaattcctaaatctcaaattcttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    ||||||||||||||||||| | ||||| ||| |||||||||||||||||| |||||||||| || |||||||    
T  31442617 aaattcctaaatctcaaatccctaaatctcatctaatttcctcttttgtttaaaatcaaattttccattaaa 31442688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 12003747 - 12003828
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaat 111  Q
    |||||||||||||||||||||||||||||  | ||||||||| |  || |||||| |||||||| |||||||||| ||||||    
T  12003747 tcacagggactaaagtgaaaatagaaaatagtaattttggtctctcaaccgaaaaccaatatccccaaattgaatatcaaat 12003828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 43381134 - 43381045
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaat 119  Q
    ||||| |||||||||| ||||||||||||  ||||||||||||| |||   |||||||||||||  ||||||||| |||||| |||||||    
T  43381134 tcacaaggactaaagtaaaaatagaaaatagtcattttggtccctgaacacaaaatcaatatccctaaattgaatctcaaatccctaaat 43381045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 14887441 - 14887373
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaa 98  Q
    |||||||||||||||||||| ||||||||| ||| | ||||||| ||||  ||||||||||||||||||    
T  14887441 tcacagggactaaagtgaaagtagaaaatggtcaatatggtccctgaattaaaaatcaatatcctcaaa 14887373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 7412272 - 7412362
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    ||||| |||||||||||||||||||||||| ||| |||| ||||  || | |||| ||||||||  ||||||||| |||||| ||||||||    
T  7412272 tcacaaggactaaagtgaaaatagaaaatggtcactttgttccctcaaccaaaaaacaatatccctaaattgaatctcaaatccctaaatc 7412362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 24459413 - 24459327
Alignment:
Q  34 agggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||||| ||||||||| ||||||||| ||| |||| |||| ||| | ||||||||||| | |||||||||| |||||||| ||||||    
T  24459413 agggaccaaagtgaaagtagaaaatggtcactttgatccctgaaccaaaaatcaatattcccaaattgaatatcaaattcgtaaatc 24459327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 120
Target Start/End: Original strand, 2910257 - 2910350
Alignment:
Q  27 gtatcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||||||| |||| ||| ||||| | ||||||||||| ||||||||  ||| | ||||||||||||| |||||||||| || ||| ||||||||    
T  2910257 gtatcacaaggaccaaaatgaaagtcgaaaatgatcactttggtccatgaaccaaaaatcaatatccccaaattgaatatcgaatccctaaatc 2910350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 111
Target Start/End: Complemental strand, 17330182 - 17330101
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaat 111  Q
    |||||| ||||||||||||| || |||||| ||| ||||||||| ||| | |||||||||||||  ||||||||| ||||||    
T  17330182 tcacagagactaaagtgaaagtaaaaaatggtcactttggtccctgaacccaaaatcaatatccctaaattgaatctcaaat 17330101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 12010224 - 12010300
Alignment:
Q  35 gggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaat 111  Q
    ||||||||||||||| ||||||||| ||||||||||    ||| | ||||||||||||| |||||||||| ||||||    
T  12010224 gggactaaagtgaaagtagaaaatggtcattttggtatatgaaccaaaaatcaatatccccaaattgaatatcaaat 12010300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 21733707 - 21733627
Alignment:
Q  37 gactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaa 117  Q
    ||||||||||||| || |||||| ||| ||||||| | ||| ||||||||||||| | |||||||||| |||||| |||||    
T  21733707 gactaaagtgaaagtaaaaaatggtcactttggtctctgaaccgaaaatcaatattcccaaattgaatctcaaatccctaa 21733627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 26585256 - 26585319
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcct 94  Q
    |||||||||||||||||||||||| ||||| ||| ||||||||| ||| ||||||| ||||||||    
T  26585256 tcacagggactaaagtgaaaatag-aaatggtcactttggtccctgaaccgaaaataaatatcct 26585319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 120
Target Start/End: Original strand, 31090315 - 31090407
Alignment:
Q  28 tatcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||||||||||| ||||||||| |||||||||  |  ||||||||| ||| | ||||| ||||||| |||||||||| |||||| | ||||||    
T  31090315 tatcacagggaccaaagtgaaagtagaaaatggccgctttggtccctgaaccaaaaattaatatccccaaattgaatatcaaatccttaaatc 31090407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 7073810 - 7073901
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaa-tcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||| ||| | |||| ||||||| |  ||||||||| |||||| | ||||||    
T  7073810 tcacagggactaaagcgaaaataaaaaatgatcactttggtccctgaaccaaaaattcaatattcctaaattgaatctcaaatccttaaatc 7073901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 12746144 - 12746101
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccc 73  Q
    |||||||||||||||||||| |||||||||||||||||| ||||    
T  12746144 tcacagggactaaagtgaaagtagaaaatgatcattttgatccc 12746101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 12011421 - 12011371
Alignment:
Q  43 agtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcc 93  Q
    ||||||||||||||||| ||||||||||| | ||||| |||||||||||||    
T  12011421 agtgaaaatagaaaatggtcattttggtcactgaatcaaaaatcaatatcc 12011371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 163
Target Start/End: Complemental strand, 2911439 - 2911309
Alignment:
Q  41 aaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc--------tcaaattcttaa 132  Q
    ||||||||| ||||||||  ||| ||||||| |  || | |||||||||||   |||||||||| |||||||||||||||        |||||||| |||    
T  2911439 aaagtgaaagtagaaaattgtcactttggtctcttaaccaaaaatcaatatttccaaattgaatatcaaattcctaaatccttaaatctcaaattcctaa 2911340  T
Q  133 atgtcaactaatttcctcttttgttcaaaat 163  Q
    |||||| ||||||  ||||||||||||||||    
T  2911339 atgtcatctaattctctcttttgttcaaaat 2911309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 33162020 - 33162069
Alignment:
Q  117 aatctcaaattcttaaatgtcaactaatttcctcttttgttcaaaatcaa 166  Q
    |||||||||| ||||||||||| ||||||  |||||||||||||||||||    
T  33162020 aatctcaaatccttaaatgtcatctaattatctcttttgttcaaaatcaa 33162069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 31091490 - 31091349
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattccta--------aatct 121  Q
    |||||| ||| ||||||||| ||||||||| ||| |||||||   ||| | ||||||||||| |  | ||||||| |||||||||||        |||||    
T  31091490 tcacagagaccaaagtgaaagtagaaaatggtcactttggtctttgaaccaaaaatcaatattccgagattgaatatcaaattcctaaatccttaaatct 31091391  T
Q  122 caaattcttaaatgtcaactaatttcctcttttgttcaaaat 163  Q
    ||||| | ||||||||| ||||||  ||||||||||||||||    
T  31091390 caaatccgtaaatgtcatctaattctctcttttgttcaaaat 31091349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 31442517 - 31442597
Alignment:
Q  36 ggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattccta 116  Q
    |||||||||||||| |  ||||||| ||  |||||||| ||| |||||||||||||||  ||||||||| |||||| ||||    
T  31442517 ggactaaagtgaaagtcaaaaatgaacacattggtccctgaaccgaaaatcaatatccctaaattgaatctcaaatcccta 31442597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 168
Target Start/End: Complemental strand, 12004829 - 12004774
Alignment:
Q  113 cctaaatctcaaattcttaaatgtcaactaatttcctcttttgttcaaaatcaaat 168  Q
    ||||||| |||||||| ||||| ||| ||||||  |||||||||||||||||||||    
T  12004829 cctaaatatcaaattcataaatctcatctaattatctcttttgttcaaaatcaaat 12004774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 179
Target Start/End: Original strand, 12010357 - 12010396
Alignment:
Q  140 ctaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  12010357 ctaatttcctattttgttcaaaatcaaatcttccattaaa 12010396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 33163367 - 33163320
Alignment:
Q  64 ttttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaat 111  Q
    |||||||||| ||| | ||||||||||||| |||||||||||||||||    
T  33163367 ttttggtccctgaaccaaaaatcaatatccccaaattgaatttcaaat 33163320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 253
Target Start/End: Original strand, 8040721 - 8040754
Alignment:
Q  220 tatatgtttggttgcacggtgggtgcaccaaaac 253  Q
    ||||||||||||||||||||||||| ||||||||    
T  8040721 tatatgtttggttgcacggtgggtgtaccaaaac 8040754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 32766150 - 32766102
Alignment:
Q  115 taaatctcaaattcttaaatgtcaactaatttcctcttttgttcaaaat 163  Q
    |||||||||||| | |||||||||  |||||| ||||||||||||||||    
T  32766150 taaatctcaaatccctaaatgtcatttaattttctcttttgttcaaaat 32766102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 166
Target Start/End: Complemental strand, 32665733 - 32665596
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaat-cgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattc 128  Q
    ||||| |||| ||||||||| ||||||||| ||| ||||||||| |||  | ||||||||||||| |||||||||| |||||| ||||||||| |||| |    
T  32665733 tcacaaggaccaaagtgaaagtagaaaatggtcactttggtccctgaacacaaaaatcaatatccccaaattgaatatcaaatccctaaatcttaaatcc 32665634  T
Q  129 ttaaatgtcaactaatttcctcttttgttcaaaatcaa 166  Q
    |||||||||| ||||||  || ||||||||||||||||    
T  32665633 ttaaatgtcatctaattatcttttttgttcaaaatcaa 32665596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 9339806 - 9339921
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattct 129  Q
    |||||||||| ||||||||| ||||||||| ||| ||||||| | ||| | ||||||||||||| |||||||||| |||||| ||||||||| |||| ||    
T  9339806 tcacagggaccaaagtgaaagtagaaaatggtcactttggtctctgaaccaaaaatcaatatccccaaattgaatatcaaatccctaaatcttaaatcct 9339905  T
Q  130 taaatgtcaactaatt 145  Q
    ||||||||| ||||||    
T  9339906 taaatgtcatctaatt 9339921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 34088408 - 34088279
Alignment:
Q  34 agggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattcttaaa 133  Q
    |||||||||||||||| ||||||    ||| ||||||||| |||   ||| ||||||||| ||||||||||||||||| ||||||||||||||  |||||    
T  34088408 agggactaaagtgaaagtagaaatgtgtcactttggtccctgaacaaaaattcaatatccccaaattgaatttcaaatccctaaatctcaaatcattaaa 34088309  T
Q  134 tgtcaactaatttcctcttttgttcaaaat 163  Q
    ||| | ||||||  ||||||||||||||||    
T  34088308 tgttatctaattctctcttttgttcaaaat 34088279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 52439621 - 52439777
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc--------t 121  Q
    ||||| |||| ||||||||| ||||||||| ||| |||| ||||  || | |||||||||||||||||||||||| |||||||||||||||        |    
T  52439621 tcacaaggaccaaagtgaaagtagaaaatggtcactttgatccctaaaccaaaaatcaatatcctcaaattgaatatcaaattcctaaatccctaaattt 52439720  T
Q  122 caaattcttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
     |||| ||||||||||| ||||||  || |||||||||||||| |||||| |||||||    
T  52439721 taaatccttaaatgtcatctaattatcttttttgttcaaaatc-aatcttccattaaa 52439777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 9340988 - 9340862
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattct 129  Q
    |||||||||| ||||||||| ||||||||| ||| ||||||||| ||| | ||| ||||||| | |||| ||||| |||||||||||||||       |     
T  9340988 tcacagggaccaaagtgaaagtagaaaatggtcactttggtccctgaaccaaaattcaatattcccaaaatgaatatcaaattcctaaatc-------cc 9340896  T
Q  130 taaatgtcaactaatttcctcttttgttcaaaat 163  Q
    ||||||||| ||||||| ||||||||||||||||    
T  9340895 taaatgtcatctaattttctcttttgttcaaaat 9340862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 41 - 135
Target Start/End: Original strand, 7944326 - 7944420
Alignment:
Q  41 aaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattcttaaatg 135  Q
    ||||||||| |||||||| |||| ||||||||| | | | ||||||||||||| |||||||||| |||||| ||||||||| |||| ||||||||    
T  7944326 aaagtgaaagtagaaaattatcactttggtccctggaccaaaaatcaatatccccaaattgaatatcaaatccctaaatcttaaatccttaaatg 7944420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 168
Target Start/End: Original strand, 26518279 - 26518412
Alignment:
Q  40 taaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaatt-----cttaaat 134  Q
    |||||||||  ||||||||| ||| ||||||| | ||| |||||| |||||||  |||||||||| ||||||||||||||| | ||||     | |||||    
T  26518279 taaagtgaaggtagaaaatggtcactttggtctctgaaccgaaaaccaatatctccaaattgaatctcaaattcctaaatcccgaatttaatccctaaat 26518378  T
Q  135 gtcaactaatttcctcttttgttcaaaatcaaat 168  Q
     ||| |||||| ||||||||||||||||||||||    
T  26518379 ctcatctaattccctcttttgttcaaaatcaaat 26518412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 6612590 - 6612746
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttc--------aaattcctaaatct 121  Q
    |||||||||||||| | ||| ||||||||||||| ||| ||||  ||| | ||||||||||||| |||||||||| ||        ||||||||||||||    
T  6612590 tcacagggactaaattcaaagtagaaaatgatcacttttgtccttgaaccaaaaatcaatatccccaaattgaatctcaaatccctaaattcctaaatct 6612689  T
Q  122 caaattcttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    ||||| | ||||||||| ||||||  || ||||||| |||||| |||||| |||||||    
T  6612690 caaatccctaaatgtcatctaattctcttttttgtttaaaatc-aatcttccattaaa 6612746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 34085706 - 34085790
Alignment:
Q  34 agggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaa 118  Q
    |||||||||| ||||| ||||||||||||| |||| | |  ||| | ||||||||||||| ||||||||||||||||||||||||    
T  34085706 agggactaaaatgaaagtagaaaatgatcactttgatgcttgaaccaaaaatcaatatccccaaattgaatttcaaattcctaaa 34085790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 534491 - 534424
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaa 97  Q
    |||| ||||||||||||||| || |||||||||| |||| ||| ||||||||||||||||||||||||    
T  534491 tcacggggactaaagtgaaagtaaaaaatgatcactttgatccacgaatcgaaaatcaatatcctcaa 534424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 16249827 - 16249914
Alignment:
Q  34 agggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatct 121  Q
    |||| ||||||||||| ||||||||| ||||||| ||||| ||| |||||||||||||||  ||||||||| | |||| |||||||||    
T  16249827 aggggctaaagtgaaagtagaaaatggtcattttagtccctgaaccgaaaatcaatatccctaaattgaatcttaaatccctaaatct 16249914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 3117836 - 3117918
Alignment:
Q  37 gactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaat 119  Q
    ||||||||||||| ||||||||||||||||| ||||  ||| | ||||| ||||||| |||||||||| |||||| |||||||    
T  3117836 gactaaagtgaaagtagaaaatgatcattttagtccttgaaccaaaaattaatatccccaaattgaatatcaaatccctaaat 3117918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 6613930 - 6613840
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||||||||||||||||||| ||| |||| || | |||| |||| ||| | ||||||||||||| |||||||||| |||||| ||||||||    
T  6613930 tcacagggactaaagtgaaagtaggaaattattactttgttccctgaaccaaaaatcaatatccccaaattgaatctcaaatccctaaatc 6613840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 11830069 - 11830158
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaat 119  Q
    ||||| ||| |||||||||| ||||||||| |||||||| |||  ||| | |||||||||||||| ||||||||| |||||||| |||||    
T  11830069 tcacatggattaaagtgaaagtagaaaatggtcattttgatcctagaaccaaaaatcaatatcctaaaattgaatctcaaattcttaaat 11830158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 25038069 - 25038149
Alignment:
Q  38 actaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaa 118  Q
    |||||||||||| |||||||| |||| ||||||||| ||| | |||||||||||||  ||||||||| |||||| ||||||    
T  25038069 actaaagtgaaagtagaaaattatcactttggtccctgaaccaaaaatcaatatccctaaattgaatctcaaatccctaaa 25038149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 25043281 - 25043361
Alignment:
Q  38 actaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaa 118  Q
    |||||||||||| |||||||| |||| ||||||||| ||| | |||||||||||||  ||||||||| |||||| ||||||    
T  25043281 actaaagtgaaagtagaaaattatcactttggtccctgaaccaaaaatcaatatccctaaattgaatctcaaatccctaaa 25043361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 22856865 - 22856939
Alignment:
Q  37 gactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaat 111  Q
    ||||||||||||| ||||||||||||| ||| || || ||| | ||| |||||||||||||||||||| ||||||    
T  22856865 gactaaagtgaaagtagaaaatgatcactttagttcctgaaccaaaattcaatatcctcaaattgaatctcaaat 22856939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 51450180 - 51450336
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaat--------tcctaaatct 121  Q
    |||||||||||||| ||||| ||||||||||||| | | ||||  ||| | ||||| ||||||| ||| |||||| ||||||        | ||||||||    
T  51450180 tcacagggactaaactgaaagtagaaaatgatcactatagtccatgaaccaaaaataaatatccccaacttgaatctcaaatctcaaaatttctaaatct 51450279  T
Q  122 caaattcttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    ||||| | ||| ||||| ||||||  ||||||||||||||||| |||||| |||||||    
T  51450280 caaatccgtaagtgtcatctaattatctcttttgttcaaaatc-aatcttccattaaa 51450336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 179
Target Start/End: Complemental strand, 52440523 - 52440367
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattccta--------aatct 121  Q
    |||||||| | ||||||||| ||||||||  ||| ||||||||| ||| | ||||| | ||| | |||||||||| |||||||||||        |||||    
T  52440523 tcacaggggccaaagtgaaagtagaaaatagtcactttggtccctgaaccaaaaataagtattcccaaattgaatatcaaattcctaaatccttaaatct 52440424  T
Q  122 caaattcttaaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    ||||| | ||||||||| ||||||  |||||||||| |||||  ||||||||||||||    
T  52440423 caaatccctaaatgtcatctaattctctcttttgtttaaaat-taatctttcattaaa 52440367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 8975339 - 8975402
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcc 93  Q
    |||||||||||||||||||| ||||||||| ||| |||||||||  || | |||||||||||||    
T  8975339 tcacagggactaaagtgaaagtagaaaatggtcactttggtcccgaaaccaaaaatcaatatcc 8975402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 1407808 - 1407872
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcct 94  Q
    ||||| |||||||||||||| |||||||| |||| ||||||||  ||| ||||||| ||||||||    
T  1407808 tcacatggactaaagtgaaagtagaaaattatcactttggtccttgaaccgaaaattaatatcct 1407872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 120
Target Start/End: Complemental strand, 39726622 - 39726540
Alignment:
Q  37 gactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    ||||||||||||| ||||||||  ||||||| | ||| ||| | ||||||||||||  ||||||||||| ||||| ||||||||    
T  39726622 gactaaagtgaaagtagaaaatagtcattttag-ccctgaaccaaaaatcaatatcaccaaattgaattccaaatccctaaatc 39726540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 51453647 - 51453592
Alignment:
Q  65 tttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||| |||| |||||  |||||||||||| ||||||||||||||||| ||||||||    
T  51453647 tttgatccctgaatcataaatcaatatccgcaaattgaatttcaaatccctaaatc 51453592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 32664667 - 32664752
Alignment:
Q  34 agggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||||| ||| ||||| ||||||||  ||| |||||||   ||||| ||||||||||| | |||||||||| |||||||||||||||    
T  32664667 agggaccaaaatgaaagtagaaaatagtcactttggtctt-gaatcaaaaatcaatattcccaaattgaatatcaaattcctaaatc 32664752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 39977512 - 39977586
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaat 104  Q
    ||||| ||||||||||  |  ||||||||||| | ||||||| | ||| | ||||||||||||||||||||||||    
T  39977512 tcacaaggactaaagtagatgtagaaaatgataactttggtctctgaaccaaaaatcaatatcctcaaattgaat 39977586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Complemental strand, 7945452 - 7945396
Alignment:
Q  107 caaattcctaaatctcaaattcttaaatgtcaactaatttcctcttttgttcaaaat 163  Q
    ||||||| |||||||||||| | |||||||||  |||||  ||||||||||||||||    
T  7945452 caaattcttaaatctcaaatccctaaatgtcatataattctctcttttgttcaaaat 7945396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 30748170 - 30748237
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaa 97  Q
    |||||||||||||||||||| || |||||| ||| ||||||||| ||||| |||||||||||||||||    
T  30748170 tcacagggactaaagtgaaagtaaaaaatggtcaatttggtccctgaatcaaaaatcaatatcctcaa 30748237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 19600187 - 19600098
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||||||||||||||||||| ||||||||| ||| |||||| ||  |||||||||| |||||||  ||||||||| ||| |||||||||||    
T  19600187 tcacagggactaaagtgaaagtagaaaatggtcactttggt-cctaaatcgaaaattaatatccctaaattgaatctcagattcctaaatc 19600098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 29856925 - 29856987
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatc 92  Q
    ||||| ||| ||||||| || ||||||||| ||||||||||| | ||||||||||||||||||    
T  29856925 tcacaaggattaaagtggaagtagaaaatggtcattttggtctctgaatcgaaaatcaatatc 29856987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 29845668 - 29845722
Alignment:
Q  38 actaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatc 92  Q
    ||||||||| || ||||||||  ||||||||||| | ||||||||||||||||||    
T  29845668 actaaagtggaagtagaaaatagtcattttggtctctgaatcgaaaatcaatatc 29845722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 189
Target Start/End: Complemental strand, 31239922 - 31239765
Alignment:
Q  38 actaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattc--------ctaaatctcaaattct 129  Q
    |||||||| ||| ||||||||| ||| ||| || |  ||| | ||||||||||||| |||||||||| |||||| |        ||||||||||||| ||    
T  31239922 actaaagtcaaagtagaaaatggtcacttttgttcttgaaccaaaaatcaatatccccaaattgaatctcaaatccttaaatccctaaatctcaaatcct 31239823  T
Q  130 taaatgtcaactaatttcctcttttgttcaaaatcaaatctttcattaaaacaacaactt 189  Q
    ||||| ||  ||||||  ||||||||||||||||  ||| ||||||| ||||||||||||    
T  31239822 taaatatcgtctaattctctcttttgttcaaaat-taatttttcatt-aaacaacaactt 31239765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 19600082 - 19600025
Alignment:
Q  123 aaattcttaaatgtcaactaatttcctctttt-gttcaaaatcaaatctttcattaaa 179  Q
    |||| ||||||| ||| |||||||||| |||| ||||||||||||||||| |||||||    
T  19600082 aaatccttaaatctcatctaatttcctttttttgttcaaaatcaaatcttccattaaa 19600025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 79253 - 79343
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatc 120  Q
    |||||||||||||| |||||  |||||||||||| ||||||||| ||||  ||||||||||| |  ||||||||| || ||||||||||||    
T  79253 tcacagggactaaaatgaaagaagaaaatgatcactttggtccctgaataaaaaatcaatatgcctaaattgaatctcgaattcctaaatc 79343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 179
Target Start/End: Original strand, 5784 - 5918
Alignment:
Q  37 gactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaattcttaaatgt 136  Q
    ||||||||||||| || ||| || ||| |||| |||| ||| | |||||||||||||||||||| ||| |||||| ||||| ||       |||||||||    
T  5784 gactaaagtgaaagtaaaaagtggtcactttgatccctgaaccaaaaatcaatatcctcaaattaaatctcaaatccctaattc-------cttaaatgt 5876  T
Q  137 caactaatttcctcttttgttcaaaatcaaatctttcattaaa 179  Q
    || ||||||  ||||||||||||||||| |||||| |||||||    
T  5877 catctaattctctcttttgttcaaaatc-aatcttccattaaa 5918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 166
Target Start/End: Complemental strand, 6185 - 6052
Alignment:
Q  41 aaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattccta--------aatctcaaattcttaa 132  Q
    ||||||||| || |||||| ||| ||||||||| ||| | ||||||||||||| |||||  ||| |||||||||||        |||||||||| | |||    
T  6185 aaagtgaaagtaaaaaatggtcactttggtccctgaaccaaaaatcaatatccccaaatataatctcaaattcctaaatccctaaatctcaaatccctaa 6086  T
Q  133 atgtcaactaatttcctcttttgttcaaaatcaa 166  Q
    ||||||  |||||  |||||||||||||||||||    
T  6085 atgtcatataattatctcttttgttcaaaatcaa 6052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 92
Target Start/End: Original strand, 3127 - 3189
Alignment:
Q  30 tcacagggactaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatc 92  Q
    ||||| ||| ||||||| || ||||||||| ||||||||||| | ||||||||||||||||||    
T  3127 tcacaaggattaaagtggaagtagaaaatggtcattttggtctctgaatcgaaaatcaatatc 3189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 1873 - 1927
Alignment:
Q  38 actaaagtgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatc 92  Q
    ||||||||| || ||||||||  ||||||||||| | ||||||||||||||||||    
T  1873 actaaagtggaagtagaaaatagtcattttggtctctgaatcgaaaatcaatatc 1927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 36473 - 36391
Alignment:
Q  45 tgaaaatagaaaatgatcattttggtccccgaatcgaaaatcaatatcctcaaattgaatttcaaattcctaaatctcaaatt 127  Q
    ||||| ||||||||| ||| |||| |||| ||| |||||||||||||||| ||||||||  |||||| |||||| | ||||||    
T  36473 tgaaagtagaaaatggtcactttgatccctgaaccgaaaatcaatatcctaaaattgaaactcaaatccctaaaacccaaatt 36391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University