View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11861_high_23 (Length: 251)
Name: NF11861_high_23
Description: NF11861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11861_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 45519408 - 45519178
Alignment:
| Q |
5 |
cagcagtgttagtgttggggatcttgttccttaaagcattctgttccaatggtacaattaatattatcgtatccaaggatgcagggagtggagattatac |
104 |
Q |
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| T |
45519408 |
cagcagtgttagtgttggggatcttgttctttaaagcattctgttccaatggtacaattaatattatcgtatccaaggatgcagggagtggagattatac |
45519309 |
T |
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| Q |
105 |
aagtgtgggtgaagctatcagaaatgcccctgattggagtcaccaaccttacatcgttcacgttttagcaggcatttatgaagaatacatcttcattcca |
204 |
Q |
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| T |
45519308 |
aagtgtgggtgaagctatcagaaatgcccctgattggagtcaccaaccttacatcgttcacgttttagcaggcatttatgaagaatacatcttcattcca |
45519209 |
T |
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| Q |
205 |
ccgagtaagattaatattaagctcctaggtc |
235 |
Q |
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| T |
45519208 |
ccgagtaagattaatattaagctcctaggtc |
45519178 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 43700700 - 43700616
Alignment:
| Q |
146 |
accaaccttacatcgttcacgttttagcaggcatttatgaagaatacatcttcattccaccgagtaagattaatattaagctcct |
230 |
Q |
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| T |
43700700 |
accaaccttacatcattcgtgttttagcgggcatttatgaagagtgcgttctcattccaccaaataagcctaatattaagctcct |
43700616 |
T |
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