View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11861_high_24 (Length: 250)
Name: NF11861_high_24
Description: NF11861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11861_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 24589905 - 24589667
Alignment:
| Q |
1 |
tagcttacctaaagatttttgtaatgaacaaagaaatcccttttacatctatcactatnnnnnnnnnnnnnn--tttgaactcctacctaagttggatta |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24589905 |
tagcttacctaaagatttttgtaatgaacaaagaaatcccttttacatctatcactataaaaaaaaaaaaaaaatttgaactcctacctaagttggatta |
24589806 |
T |
|
| Q |
99 |
gagtgagagaagaggggaaaccagttataccactaacaaaacagacacaaacaaattttgaagatatataaggacagagtataatgcatgaacatgccat |
198 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24589805 |
gagtgacagaagaggggaaaccagttataccactaacaaaacagacacaaacaaattttgaagatatataaggacagagtataatgcatgaacatgccat |
24589706 |
T |
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| Q |
199 |
aatggctgccaaataccattgtcagttgtacgtgcacct |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
24589705 |
aatggctgccaaataccattgtcagttgtacgtgcacct |
24589667 |
T |
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