View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11861_high_4 (Length: 665)

Name: NF11861_high_4
Description: NF11861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11861_high_4
NF11861_high_4
[»] chr3 (18 HSPs)
chr3 (1-306)||(40763664-40763969)
chr3 (4-305)||(20843132-20843432)
chr3 (11-306)||(3458028-3458324)
chr3 (1-106)||(52403219-52403324)
chr3 (38-157)||(17652934-17653051)
chr3 (168-281)||(16152063-16152176)
chr3 (30-152)||(16152317-16152437)
chr3 (1-106)||(11906536-11906641)
chr3 (92-157)||(21296014-21296078)
chr3 (92-157)||(46823886-46823950)
chr3 (152-280)||(19795412-19795540)
chr3 (1-108)||(29648469-29648577)
chr3 (12-93)||(35106444-35106525)
chr3 (6-123)||(38171470-38171590)
chr3 (50-93)||(36312281-36312324)
chr3 (161-215)||(29123428-29123482)
chr3 (49-124)||(19795661-19795732)
chr3 (50-130)||(37175495-37175573)
[»] chr7 (26 HSPs)
chr7 (1-305)||(28491167-28491471)
chr7 (1-305)||(13465310-13465614)
chr7 (62-305)||(25439566-25439806)
chr7 (30-157)||(34659394-34659520)
chr7 (10-157)||(29715764-29715909)
chr7 (58-157)||(37202823-37202921)
chr7 (153-283)||(37202571-37202700)
chr7 (1-106)||(25592182-25592287)
chr7 (30-157)||(758911-759036)
chr7 (78-157)||(46211663-46211741)
chr7 (38-157)||(48609052-48609169)
chr7 (78-135)||(83617-83673)
chr7 (152-269)||(25591918-25592035)
chr7 (92-157)||(39719961-39720025)
chr7 (42-130)||(37049134-37049220)
chr7 (17-91)||(14047081-14047155)
chr7 (17-91)||(14357111-14357185)
chr7 (175-221)||(29716051-29716097)
chr7 (50-98)||(20926818-20926866)
chr7 (152-280)||(45855342-45855470)
chr7 (161-215)||(27097050-27097104)
chr7 (161-215)||(27181199-27181253)
chr7 (73-127)||(40253630-40253683)
chr7 (152-306)||(40253844-40253998)
chr7 (4-33)||(25439537-25439566)
chr7 (85-133)||(45228050-45228098)
[»] chr1 (25 HSPs)
chr1 (306-648)||(31032929-31033269)
chr1 (1-305)||(30950750-30951054)
chr1 (28-313)||(29799022-29799305)
chr1 (10-152)||(11142697-11142837)
chr1 (30-146)||(33240831-33240946)
chr1 (31-152)||(10406128-10406247)
chr1 (60-135)||(28403128-28403202)
chr1 (4-119)||(52110942-52111056)
chr1 (10-152)||(10177922-10178062)
chr1 (78-157)||(44961470-44961548)
chr1 (1-135)||(47367903-47368036)
chr1 (48-157)||(19313401-19313508)
chr1 (30-152)||(23614656-23614776)
chr1 (188-281)||(23614402-23614495)
chr1 (10-157)||(1600502-1600650)
chr1 (152-215)||(29357169-29357232)
chr1 (154-273)||(47367639-47367757)
chr1 (92-157)||(15757758-15757822)
chr1 (12-156)||(46515613-46515753)
chr1 (92-157)||(10620145-10620209)
chr1 (12-93)||(21972495-21972576)
chr1 (49-130)||(27696506-27696583)
chr1 (168-217)||(19313217-19313266)
chr1 (49-130)||(24134376-24134455)
chr1 (12-108)||(5184644-5184737)
[»] chr6 (19 HSPs)
chr6 (1-306)||(1780584-1780889)
chr6 (1-157)||(29486475-29486629)
chr6 (59-153)||(24428827-24428919)
chr6 (1-106)||(22956385-22956490)
chr6 (1-106)||(23831902-23832007)
chr6 (78-157)||(29363531-29363609)
chr6 (175-283)||(29486224-29486332)
chr6 (1-121)||(31216230-31216346)
chr6 (1-98)||(21216466-21216563)
chr6 (78-157)||(34729857-34729935)
chr6 (12-156)||(903975-904115)
chr6 (152-280)||(904223-904352)
chr6 (152-280)||(33224522-33224650)
chr6 (152-282)||(22956637-22956766)
chr6 (152-282)||(23831626-23831755)
chr6 (159-229)||(24428622-24428692)
chr6 (152-212)||(8560093-8560153)
chr6 (243-281)||(27673842-27673880)
chr6 (49-124)||(8559901-8559972)
[»] chr8 (24 HSPs)
chr8 (1-305)||(12491418-12491722)
chr8 (1-157)||(18881858-18882012)
chr8 (33-157)||(38172743-38172870)
chr8 (10-152)||(38699683-38699823)
chr8 (152-305)||(6115131-6115284)
chr8 (1-157)||(41570441-41570596)
chr8 (31-146)||(43115234-43115347)
chr8 (13-150)||(13541357-13541491)
chr8 (13-150)||(13682982-13683116)
chr8 (160-282)||(41570189-41570311)
chr8 (152-305)||(32415644-32415797)
chr8 (7-106)||(6114886-6114984)
chr8 (92-157)||(4072227-4072291)
chr8 (92-157)||(21441593-21441657)
chr8 (52-157)||(40118144-40118247)
chr8 (152-236)||(1233756-1233840)
chr8 (92-157)||(41323181-41323245)
chr8 (152-236)||(13641112-13641196)
chr8 (152-236)||(13741524-13741608)
chr8 (49-130)||(1233564-1233641)
chr8 (49-130)||(13640920-13640997)
chr8 (49-130)||(13741332-13741409)
chr8 (111-149)||(33613707-33613745)
chr8 (152-209)||(38172982-38173039)
[»] chr2 (19 HSPs)
chr2 (1-305)||(16546206-16546510)
chr2 (4-294)||(45655891-45656180)
chr2 (17-203)||(39070152-39070338)
chr2 (2-216)||(37614532-37614748)
chr2 (1-157)||(42799097-42799253)
chr2 (189-304)||(39070355-39070459)
chr2 (12-144)||(4435287-4435417)
chr2 (482-568)||(30760458-30760544)
chr2 (477-574)||(13534994-13535092)
chr2 (169-308)||(26180406-26180544)
chr2 (481-548)||(30758317-30758384)
chr2 (1-133)||(21746092-21746221)
chr2 (1-108)||(14802660-14802768)
chr2 (152-306)||(8230376-8230531)
chr2 (73-127)||(35524694-35524747)
chr2 (159-229)||(42799349-42799420)
chr2 (152-305)||(35524913-35525066)
chr2 (30-94)||(38881794-38881857)
chr2 (1-29)||(39069991-39070019)
[»] chr4 (21 HSPs)
chr4 (4-305)||(22785880-22786180)
chr4 (1-294)||(6016752-6017044)
chr4 (4-294)||(2407018-2407308)
chr4 (12-157)||(21790774-21790919)
chr4 (33-157)||(52628294-52628421)
chr4 (1-157)||(54165882-54166031)
chr4 (3-98)||(17815897-17815992)
chr4 (168-281)||(48861760-48861873)
chr4 (10-157)||(8745633-8745778)
chr4 (152-280)||(21790525-21790652)
chr4 (78-157)||(48841184-48841262)
chr4 (30-152)||(48862014-48862134)
chr4 (1-106)||(11950592-11950697)
chr4 (179-274)||(48840949-48841043)
chr4 (152-222)||(52628100-52628170)
chr4 (152-305)||(8762829-8762982)
chr4 (92-157)||(43892522-43892586)
chr4 (152-236)||(16608578-16608662)
chr4 (73-124)||(8762614-8762664)
chr4 (73-127)||(5476394-5476447)
chr4 (159-215)||(54166160-54166216)
[»] chr5 (18 HSPs)
chr5 (28-294)||(40528127-40528392)
chr5 (1-156)||(16908564-16908717)
chr5 (1-135)||(40360949-40361080)
chr5 (153-294)||(16908840-16908979)
chr5 (30-157)||(34034105-34034230)
chr5 (31-152)||(17695850-17695969)
chr5 (1-121)||(7008942-7009061)
chr5 (78-157)||(41640054-41640132)
chr5 (1-157)||(19948765-19948915)
chr5 (152-222)||(22098943-22099013)
chr5 (195-281)||(34033839-34033925)
chr5 (92-157)||(13517580-13517644)
chr5 (92-157)||(17768976-17769040)
chr5 (152-310)||(3498684-3498842)
chr5 (51-156)||(14521651-14521753)
chr5 (12-93)||(42353223-42353304)
chr5 (255-305)||(7008761-7008811)
chr5 (152-214)||(19949035-19949097)
[»] scaffold0795 (1 HSPs)
scaffold0795 (436-605)||(5023-5190)
[»] scaffold0186 (1 HSPs)
scaffold0186 (1-157)||(22726-22880)
[»] scaffold0361 (1 HSPs)
scaffold0361 (152-292)||(6917-7056)
[»] scaffold0005 (1 HSPs)
scaffold0005 (11-157)||(292188-292332)
[»] scaffold0002 (2 HSPs)
scaffold0002 (61-156)||(428333-428426)
scaffold0002 (152-215)||(428548-428611)
[»] scaffold0481 (1 HSPs)
scaffold0481 (84-157)||(6701-6773)
[»] scaffold1554 (1 HSPs)
scaffold1554 (17-135)||(819-935)
[»] scaffold0110 (1 HSPs)
scaffold0110 (152-214)||(7097-7159)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 40763969 - 40763664
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40763969 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgttttttcc 40763870  T
Q  101 aatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatgttaattttcggcaactgaatttgtttgggatagctccatgttt 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  40763869 aatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcgacaactgaatttgtttgggatagctcaatgttt 40763770  T
Q  201 attatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaatgaagggatgcgc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||    
T  40763769 attatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtaaccaaggctacctcttgtcaatgaagggttgcgc 40763670  T
Q  301 ccctgc 306  Q
    ||||||    
T  40763669 ccctgc 40763664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 4 - 305
Target Start/End: Original strand, 20843132 - 20843432
Alignment:
Q  4 acaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaat 103  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  20843132 acaatagctatttaaaaaagttgggtaaaatgcatttcaagaagccaattttatccataatagaccatttactaaatagattaataatgtcttttccaat 20843231  T
Q  104 gtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatgttaattttcggcaactgaatttgtttgggatagctccatgtttatt 203  Q
    ||||| |||||||||||||||||||||| ||||||| ||||||| ||||||||| ||  ||||| |||||||||||||||||| |||||| |||||||||    
T  20843232 gtaaa-caaataggttatttgcaagaaattcaatgtccatttaaattgtttatgctagctttcgacaactgaatttgtttggggtagctcaatgtttatt 20843330  T
Q  204 atttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaatgaagggatgcgcccc 303  Q
    |||||||||||||||| || |||||| ||||||  |||||| |||||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||    
T  20843331 atttggggtagccgaaaataaatttataccaaccaattaaatattaatatattttttggggtagccaaggctaccccttgccaataaagggctacgcccc 20843430  T
Q  304 tg 305  Q
    ||    
T  20843431 tg 20843432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 11 - 306
Target Start/End: Original strand, 3458028 - 3458324
Alignment:
Q  11 ctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaac 110  Q
    ||||||||||| |||| |||||||  |||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||| |||| ||| ||||    
T  3458028 ctatttaaaaaggttgggtaaaataaatttcaagaaaccaattttatctataattgaccgtttactagataaattaataatgtcttctccagtgt-aaac 3458126  T
Q  111 aaataggttatttgcaagaaactcaatgttcatttaatttgtttatgttaattttcggcaactgaatttgtttggg--atagctccatgtttattatttg 208  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||  |||||  ||| ||| || |||||||| ||    
T  3458127 aaataagttatttgcaagaaactcaatatccatttaatttgtttatgctaattttcggcaactgaatttacttggggtatatctcaatatttattatatg 3458226  T
Q  209 gggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaatgaagggatgcgcccctgc 306  Q
    |||||||||||||| |||||| |||||   |||||||||||||||||||||| |||||||||||||||||  ||| |||||||||| | |||||||||    
T  3458227 gggtagccgaatataaatttagaccaaacaattaaagattaatatatttttttgggtagccaaggctacctgttgccaatgaagggctacgcccctgc 3458324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 52403219 - 52403324
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    ||||| ||||||||||||||||||||  |||||||  ||||||||| |||||||||||||||| ||||  ||||| ||||||||||||||| | ||||||    
T  52403219 ttgacgatagctatttaaaaaagttggataaaatgtgtttcaagaacccaattttatccataaatgactatttacaaaatagattaataatatattttcc 52403318  T
Q  101 aatgta 106  Q
    ||||||    
T  52403319 aatgta 52403324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 38 - 157
Target Start/End: Original strand, 17652934 - 17653051
Alignment:
Q  38 tttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaat 137  Q
    ||||||||| ||||||| ||| |||||||   ||||| ||| |||||||||||||||||||| ||||| ||  ||||||||||||||||||||||||| |    
T  17652934 tttcaagaacccaatttcatcaataattgtttgtttaataa-tagattaataatgtcttttcaaatgttaat-aaataggttatttgcaagaaactcatt 17653031  T
Q  138 gttcatttaatttgtttatg 157  Q
    || |||||||||||| ||||    
T  17653032 gtacatttaatttgtctatg 17653051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 168 - 281
Target Start/End: Complemental strand, 16152176 - 16152063
Alignment:
Q  168 gcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtag 267  Q
    |||||| || || |||||| |||||| ||||||||||||||||||||||| |||| ||| || ||| | | ||| |||| |||||  |||||||||||||    
T  16152176 gcaactaaacttatttggggtagctcaatgtttattatttggggtagccggatataaatatataccgattaattcaagaataatactttttttggggtag 16152077  T
Q  268 ccaaggctacccct 281  Q
    ||||||||||||||    
T  16152076 ccaaggctacccct 16152063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 16152437 - 16152317
Alignment:
Q  30 aaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaaga 129  Q
    ||||||||||| ||||| ||||||| ||| ||||||| | ||||| ||| ||||||||||||| |||||  ||||||||  ||||| |||||||||||||    
T  16152437 aaaatgcatttgaagaacccaatttcatcaataattgtctgtttaataa-tagattaataatgactttttaaatgtaaat-aaatatgttatttgcaaga 16152340  T
Q  130 aactcaatgttcatttaatttgt 152  Q
    |||||| |||   ||||||||||    
T  16152339 aactcattgtctgtttaatttgt 16152317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 11906536 - 11906641
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    ||||| ||||||||||||||||||||  | |||||  ||||||||  |||||||||| ||||| ||||  ||||| ||||||||||||||| | |||| |    
T  11906536 ttgacgatagctatttaaaaaagttggatgaaatgtgtttcaagagcccaattttattcataaatgacaatttacaaaatagattaataatatatttttc 11906635  T
Q  101 aatgta 106  Q
    ||||||    
T  11906636 aatgta 11906641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 21296078 - 21296014
Alignment:
Q  92 gtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    |||||||| ||||||||  ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  21296078 gtcttttcaaatgtaaat-aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 21296014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 46823950 - 46823886
Alignment:
Q  92 gtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    |||||||| ||||||||  ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  46823950 gtcttttcaaatgtaaat-aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 46823886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 280
Target Start/End: Complemental strand, 19795540 - 19795412
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 251  Q
    |||||||||||||||| ||||  || ||||||||| |||||| || |||||||||||| |||||  ||||| ||| || ||||||  ||| |||| || |    
T  19795540 tttatgttaattttcgacaaccaaacttgtttggggtagctcaatatttattatttggagtagctaaatataaatatataccaaccaattcaagaatatt 19795441  T
Q  252 atattttttggggtagccaaggctacccc 280  Q
     | | |||||||||||| | |||||||||    
T  19795440 ttttattttggggtagcaagggctacccc 19795412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 29648577 - 29648469
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataat--tgaccgtttactaaatagattaataatgtctttt 98  Q
    |||||||||| |||| | |||||||| | |||||| |||| |||||  ||||||||||||||||  |||  |||||||||||| ||||||||| ||||||    
T  29648577 ttgacaatagttatt-agaaaagttgagcaaaatggattttaagaagtcaattttatccataatattgattgtttactaaataaattaataatctctttt 29648479  T
Q  99 ccaatgtaaa 108  Q
     |||| ||||    
T  29648478 tcaatataaa 29648469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 35106444 - 35106525
Alignment:
Q  12 tatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgt 93  Q
    ||||||||||| ||| | ||||   |||| |||||  |||||||||||||||||||| ||||| ||||||||||| ||||||    
T  35106444 tatttaaaaaatttgggcaaaacatattttaagaagtcaattttatccataattgactgtttaataaatagattattaatgt 35106525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 38171590 - 38171470
Alignment:
Q  6 aatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataa----ttgaccgtttactaaatagattaataatgtcttttcca 101  Q
    |||||||||| ||||||||||   ||||||  ||| || ||  |||||||||||||||    ||||  |||||| ||||||||||||||||||||||| |    
T  38171590 aatagctattcaaaaaagttgaacaaaatgtgttttaaaaagtcaattttatccataaatgattgattgtttacaaaatagattaataatgtcttttcta 38171491  T
Q  102 atgtaaaacaaataggttattt 123  Q
    || | | |||||||||||||||    
T  38171490 at-ttacacaaataggttattt 38171470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 93
Target Start/End: Original strand, 36312281 - 36312324
Alignment:
Q  50 aattttatccataattgaccgtttactaaatagattaataatgt 93  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||    
T  36312281 aattttatccataattgactgtttaataaatagattattaatgt 36312324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 29123482 - 29123428
Alignment:
Q  161 attttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagc 215  Q
    ||||||| ||||  ||||| ||||||||||||| || ||||||||||||||||||    
T  29123482 attttcgacaacgaaatttatttgggatagctcaatatttattatttggggtagc 29123428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 19795732 - 19795661
Alignment:
Q  49 caattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttg 124  Q
    |||||||||||||||||||  ||||| |||| |||||| ||||||||||| |||||||||   |||||||||||||    
T  19795732 caattttatccataattgattgtttaataaa-agattactaatgtctttt-caatgtaaa--caataggttatttg 19795661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 37175573 - 37175495
Alignment:
Q  50 aattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaa 130  Q
    |||||||||||||||| |  | ||| ||||||||||| |||||||||||  ||||| ||| |||||| |||||||||||||    
T  37175573 aattttatccataattaaatgattaataaatagattattaatgtctttt-taatgt-aaataaatagattatttgcaagaa 37175495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 28491471 - 28491167
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28491471 ttgacaatagctatttaaaaaatttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 28491372  T
Q  101 aatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatgttaattttcggcaactgaatttgtttgggatagctccatgttt 200  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28491371 aatgtaaaataaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcggcaactgaatttgtttgggatagctcaatgttt 28491272  T
Q  201 attatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaatgaagggatgcgc 300  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28491271 attatttggggtagccgagtatcaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaatgaagggctgcgc 28491172  T
Q  301 ccctg 305  Q
    |||||    
T  28491171 ccctg 28491167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 13465614 - 13465310
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13465614 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 13465515  T
Q  101 aatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatgttaattttcggcaactgaatttgtttgggatagctccatgttt 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| || |||||| |||||     
T  13465514 aatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaaatttcggaaactgaatttgtttagggtagctcaatgtta 13465415  T
Q  201 attatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaatgaagggatgcgc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  13465414 attatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaatgaagggttgcac 13465315  T
Q  301 ccctg 305  Q
    |||||    
T  13465314 ccctg 13465310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 62 - 305
Target Start/End: Original strand, 25439566 - 25439806
Alignment:
Q  62 aattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatgttaa 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||||||||||||||||||||    
T  25439566 aattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggtt---tgcaagaaactcaatgtccatttaatttgtttatgttaa 25439662  T
Q  162 ttttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttg 261  Q
    ||||||||||||||||||||| ||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25439663 ttttcggcaactgaatttgttcggggtagctcaatatttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttg 25439762  T
Q  262 gggtagccaaggctaccccttgtcaatgaagggatgcgcccctg 305  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  25439763 gggtagccaaggctaccccttgtcaatgaagggctgcgcccctg 25439806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 34659520 - 34659394
Alignment:
Q  30 aaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaaga 129  Q
    ||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||| ||||  ||||| |||| |||| ||||||||||| |    
T  34659520 aaaatgcatttcaagaaaccaattttatctataattgagtgtttactaaatagattaataatgtatttttaaatgt-aaactaataagttatttgcaata 34659422  T
Q  130 aactcaatgttcatttaatttgtttatg 157  Q
    |||||| | | |||||||||||||||||    
T  34659421 aactcattatccatttaatttgtttatg 34659394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 29715764 - 29715909
Alignment:
Q  10 gctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaa 109  Q
    |||||||| ||| |||| | ||||||| ||||||||| ||||||| ||| ||||| ||| ||||| ||| |||||||||||||||||||| ||||| |||    
T  29715764 gctatttagaaacgttgggcaaaatgcgtttcaagaacccaatttcatcaataatagactgtttaataa-tagattaataatgtcttttcaaatgt-aaa 29715861  T
Q  110 caaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
     ||||||||||||| |||||||||||  || |||||||||||| ||||    
T  29715862 taaataggttatttacaagaaactcaccgtccatttaatttgtctatg 29715909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 58 - 157
Target Start/End: Complemental strand, 37202921 - 37202823
Alignment:
Q  58 ccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    ||||| ||| |||||||||||||||||||||||||| |||||  ||||||| ||||||| |||||||||||||||| ||||| |||||||||||||||||    
T  37202921 ccatagttggccgtttactaaatagattaataatgttttttctgatgtaaa-caaatagattatttgcaagaaactgaatgtccatttaatttgtttatg 37202823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 153 - 283
Target Start/End: Complemental strand, 37202700 - 37202571
Alignment:
Q  153 ttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaata 252  Q
    ||||||||||||||| ||||| |||||||||| ||| |||  || |||||||||||||| ||| | |||| ||| || ||||||  ||| |||| |||||    
T  37202700 ttatgttaattttcgacaactaaatttgtttgagatggcttaatatttattatttggggcagcaggatataaatatataccaaccaattgaagaataata 37202601  T
Q  253 tattttttggggtagccaaggctaccccttg 283  Q
    |||||||| ||||||||||||||||||||||    
T  37202600 tatttttt-gggtagccaaggctaccccttg 37202571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 25592287 - 25592182
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    ||||| ||||||||||||||||||||  |||||||  ||||||||| |||||||||||||||| ||||  ||||| ||||||||||||||| | |||| |    
T  25592287 ttgacgatagctatttaaaaaagttggataaaatgtgtttcaagaacccaattttatccataaatgactatttacaaaatagattaataatatattttgc 25592188  T
Q  101 aatgta 106  Q
    ||||||    
T  25592187 aatgta 25592182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 759036 - 758911
Alignment:
Q  30 aaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaaga 129  Q
    ||||| ||||||||||| | ||||| ||| |||||||   ||||| ||| |||||||||||||||||||| ||||||||  |||||| ||||||||||||    
T  759036 aaaatacatttcaagaaccgaatttcatcaataattgtttgtttaataa-tagattaataatgtcttttcaaatgtaaat-aaatagattatttgcaaga 758939  T
Q  130 aactcaatgttcatttaatttgtttatg 157  Q
    |||||| ||| |||||||||||| ||||    
T  758938 aactcattgtacatttaatttgtctatg 758911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 78 - 157
Target Start/End: Original strand, 46211663 - 46211741
Alignment:
Q  78 aatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  46211663 aatagattaataatgtcttttcaaatgtaaat-aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 46211741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 38 - 157
Target Start/End: Original strand, 48609052 - 48609169
Alignment:
Q  38 tttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaat 137  Q
    ||||||||| ||||||| ||| |||||||   ||||| ||| |||||||||||||| ||||| ||||| ||  ||||||||||||||||||||||||| |    
T  48609052 tttcaagaacccaatttcatcaataattgtttgtttaataa-tagattaataatgtgttttcaaatgttaat-aaataggttatttgcaagaaactcatt 48609149  T
Q  138 gttcatttaatttgtttatg 157  Q
    || |||||||||||| ||||    
T  48609150 gtacatttaatttgtctatg 48609169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 83617 - 83673
Alignment:
Q  78 aatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactca 135  Q
    |||||||||||||||||||||| ||||| ||| ||||||||||||| |||||||||||    
T  83617 aatagattaataatgtcttttcaaatgt-aaataaataggttatttacaagaaactca 83673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 152 - 269
Target Start/End: Complemental strand, 25592035 - 25591918
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 251  Q
    ||||||||  |||| |||||||||| ||||||||  |||||| || |||||||||||||||||| | ||||  ||  | ||||||| ||  |||| ||||    
T  25592035 tttatgttgttttttggcaactgaacttgtttggagtagctcaatatttattatttggggtagctggatatagatacataccaactaatacaagaataat 25591936  T
Q  252 atattttttggggtagcc 269  Q
    || |||||||||||||||    
T  25591935 attttttttggggtagcc 25591918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 39720025 - 39719961
Alignment:
Q  92 gtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    |||||||| ||||||||  ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  39720025 gtcttttcaaatgtaaat-aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 39719961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 130
Target Start/End: Complemental strand, 37049220 - 37049134
Alignment:
Q  42 aagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaa 130  Q
    ||||| ||||||||||   ||||| || ||||| |||| |||||||||||||||||| |||||| |||||||||||||||||| |||||    
T  37049220 aagaagccaattttatttgtaattaactgtttaataaaaagattaataatgtctttt-caatgt-aaacaaataggttatttgtaagaa 37049134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 14047155 - 14047081
Alignment:
Q  17 aaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataat 91  Q
    ||||||||||   ||||||  ||||||||||||||||||| |||||| ||||  ||||| |||||||||||||||    
T  14047155 aaaaaagttggacaaaatgtgtttcaagaaaccaattttagccataaatgactatttacaaaatagattaataat 14047081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 14357185 - 14357111
Alignment:
Q  17 aaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataat 91  Q
    ||||||||||   ||||||  ||||||||||||||||||| |||||| ||||  ||||| |||||||||||||||    
T  14357185 aaaaaagttggacaaaatgtgtttcaagaaaccaattttagccataaatgactatttacaaaatagattaataat 14357111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 29716051 - 29716097
Alignment:
Q  175 aatttgtttgggatagctccatgtttattatttggggtagccgaata 221  Q
    |||||||||||| |||||| || ||||||||||||||||||||||||    
T  29716051 aatttgtttggggtagctcaatatttattatttggggtagccgaata 29716097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 20926818 - 20926866
Alignment:
Q  50 aattttatccataattgaccgtttactaaatagattaataatgtctttt 98  Q
    ||||||||||||||||||| ||||| ||||||||||| |||||| ||||    
T  20926818 aattttatccataattgactgtttaataaatagattattaatgtttttt 20926866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 280
Target Start/End: Complemental strand, 45855470 - 45855342
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 251  Q
    |||||||||||||||| ||||  || || |||||| |||||| || ||||||||||||||||||  ||||| ||| || ||| ||  ||| |||| || |    
T  45855470 tttatgttaattttcgacaaccaaacttatttggggtagctcaatatttattatttggggtagctaaatataaatatataccgaccaattcaagaatatt 45855371  T
Q  252 atattttttggggtagccaaggctacccc 280  Q
     | | |||||||||||| | |||||||||    
T  45855370 ttttcttttggggtagcaagggctacccc 45855342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 161 - 215
Target Start/End: Complemental strand, 27097104 - 27097050
Alignment:
Q  161 attttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagc 215  Q
    ||||||| ||||  |||||||||||| |||||| || ||||||||||||||||||    
T  27097104 attttcgacaaccaaatttgtttggggtagctcaatatttattatttggggtagc 27097050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 27181199 - 27181253
Alignment:
Q  161 attttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagc 215  Q
    ||||||| ||||  |||||||||||| |||||| || ||||||||||||||||||    
T  27181199 attttcgacaaccaaatttgtttggggtagctcaatatttattatttggggtagc 27181253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 40253630 - 40253683
Alignment:
Q  73 tactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaa 127  Q
    ||||||||||| |||||||||||||| |||||| |||||||||  ||||||||||    
T  40253630 tactaaatagactaataatgtctttttcaatgt-aaacaaataaattatttgcaa 40253683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 152 - 306
Target Start/End: Original strand, 40253844 - 40253998
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 251  Q
    ||||||||||||||   ||| | ||||| |||||| |||||  || ||| ||||||||| ||||  ||||| ||   | |||||| |||| ||||  |||    
T  40253844 tttatgttaatttttaacaaataaatttatttggggtagctaaatattttttatttgggatagctaaatataaaaacataccaacatattcaagaacaat 40253943  T
Q  252 atattttttggggtagccaaggctaccccttgtcaatgaagggatgcgcccctgc 306  Q
    || |||||||||||||||| ||||||| | ||  ||||||||||  |||||||||    
T  40253944 attttttttggggtagccatggctacctcatgctaatgaagggaaccgcccctgc 40253998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 25439537 - 25439566
Alignment:
Q  4 acaatagctatttaaaaaagttgtgtaaaa 33  Q
    ||||||||||||||||||||||||||||||    
T  25439537 acaatagctatttaaaaaagttgtgtaaaa 25439566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 45228098 - 45228050
Alignment:
Q  85 taataatgtcttttccaatgtaaaacaaataggttatttgcaagaaact 133  Q
    |||||||||||||| |||||||||  ||||| |||||||| ||||||||    
T  45228098 taataatgtctttttcaatgtaaacaaaataagttatttgtaagaaact 45228050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 275; Significance: 1e-153; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 306 - 648
Target Start/End: Original strand, 31032929 - 31033269
Alignment:
Q  306 cttgtaactgtcacaatcccacacctatgccttaatctctttcaacagaaaaggtctaataagattagctccatcctccatagaaattgttttaaaggat 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31032929 cttgtaactgtcacaatcccacacctatgccttaatctctttcaacacaaaaggtctaataagattagctccattctccatagaaattgttttaaaggat 31033028  T
Q  406 atattccctacatctgatctagacaacattacctctataaaatgtgactgaaaaatgttgaaacattgcgttcctcaccccttccacaccctcgatctga 505  Q
    | || ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||| |||    
T  31033029 agatcccctacacctgatctagacaacattacctctataaaatgtgactg-aaaatgttgaaatattgtgttcctcaccccttccacaccctcgatatga 31033127  T
Q  506 acaccattaacattattagagataatcacattcgaccttctccgagaggacatcaccccatggaaaaaatttagaattgacatcaacttcctttaaccaa 605  Q
    ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||    
T  31033128 acaccattaacattattagagataatcgcattcaaccttctctgagaggacatcatcccgtgg-aaaaatttagaattgacatcaacttcctttaaccaa 31033226  T
Q  606 tctattctaagttttttgcgactgaatacctgaatgcaatttg 648  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  31033227 tctattctaagttttttgcgactgaatacctgaatgcaatttg 31033269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 30950750 - 30951054
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  30950750 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtctttttc 30950849  T
Q  101 aatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatgttaattttcggcaactgaatttgtttgggatagctccatgttt 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||||    
T  30950850 aatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcggcaactgaatttgtttggggatgctcaatgttt 30950949  T
Q  201 attatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaatgaagggatgcgc 300  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30950950 attatttggggtactcgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaatgaagggctgcgc 30951049  T
Q  301 ccctg 305  Q
    |||||    
T  30951050 ccctg 30951054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 28 - 313
Target Start/End: Original strand, 29799022 - 29799305
Alignment:
Q  28 gtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaa 127  Q
    ||||||||||||||||||| ||||||||||| ||| |||| | |||||||||| |||||||||||||||| |||||||||| ||||||||||||||| ||    
T  29799022 gtaaaatgcatttcaagaagccaattttatctatatttgatcatttactaaattgattaataatgtctttcccaatgtaaa-caaataggttatttgtaa 29799120  T
Q  128 gaaactcaatgttcatttaatttgtttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatt 227  Q
    |||||||||| | ||||||||||||||||| || |||| ||||||||||||| |||||  || ||| |||||||||||||||||||||||||||| ||||    
T  29799121 gaaactcaatatccatttaatttgtttatgctagtttttggcaactgaatttatttggagtaactcaatgtttattatttggggtagccgaatataaatt 29799220  T
Q  228 tacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaatgaagggatgcgcccctgcttgtaac 313  Q
    || ||||||  |||||||||||||||||||||| |||||||||||||||||||||| |||||||||| | ||||||||||| ||||    
T  29799221 tataccaaccaattaaagattaatatatttttt-gggtagccaaggctaccccttgccaatgaagggctacgcccctgcttttaac 29799305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 10 - 152
Target Start/End: Complemental strand, 11142837 - 11142697
Alignment:
Q  10 gctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaa 109  Q
    |||||||| ||| |||| ||||||||  ||||||||| ||||||||||| ||||||| | ||||| ||| |||||||||||||||||||| ||||||||     
T  11142837 gctatttagaaacgttgggtaaaatgtgtttcaagaacccaattttatcaataattgtctgtttaataa-tagattaataatgtcttttcaaatgtaaat 11142739  T
Q  110 caaataggttatttgcaagaaactcaatgttcatttaatttgt 152  Q
     || ||||||||| |||||||||||| ||| ||||||||||||    
T  11142738 gaa-taggttattcgcaagaaactcattgtccatttaatttgt 11142697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 33240831 - 33240946
Alignment:
Q  30 aaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaaga 129  Q
    ||||||||||| || |||||||||||||||||||||||  ||||| |||||||||||||||||| ||||||||||| |||| ||||||| |||| ||| |    
T  33240831 aaaatgcattttaaaaaaccaattttatccataattgagtgtttaataaatagattaataatgtattttccaatgt-aaactaataggtcattttcaata 33240929  T
Q  130 aactcaatgttcattta 146  Q
    || ||||||| ||||||    
T  33240930 aattcaatgtccattta 33240946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 10406128 - 10406247
Alignment:
Q  31 aaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaa 130  Q
    |||||| ||||||||| ||||||| ||| ||||||||| ||||| ||| |||||||||||||| ||||| ||||||||  ||||||||||||||||||||    
T  10406128 aaatgcgtttcaagaacccaatttcatcaataattgactgtttaataa-tagattaataatgttttttcgaatgtaaat-aaataggttatttgcaagaa 10406225  T
Q  131 actcaatgttcatttaatttgt 152  Q
    ||||| ||| |||||| |||||    
T  10406226 actcactgtccatttagtttgt 10406247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 60 - 135
Target Start/End: Complemental strand, 28403202 - 28403128
Alignment:
Q  60 ataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactca 135  Q
    ||||||||||||||| ||||||||| ||||||||||||| |||||| |||||||||||||||||||| ||||||||    
T  28403202 ataattgaccgtttattaaatagatcaataatgtctttttcaatgt-aaacaaataggttatttgcatgaaactca 28403128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 52110942 - 52111056
Alignment:
Q  4 acaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaat 103  Q
    ||||||| |||||||||||||||   ||||| | ||| ||||| |||||||||| ||||||||||  ||||||||| | |||||||||||||||||||||    
T  52110942 acaatagttatttaaaaaagttggacaaaatacgttttaagaagccaattttattcataattgactttttactaaacaaattaataatgtcttttccaat 52111041  T
Q  104 gtaaaacaaataggtt 119  Q
     | |||||||||||||    
T  52111042 at-aaacaaataggtt 52111056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 10 - 152
Target Start/End: Complemental strand, 10178062 - 10177922
Alignment:
Q  10 gctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaa 109  Q
    |||||||||||| || | | ||||||| |||||||||  |||||| ||| ||||||||| ||||| ||| |||||||||||||| ||||| ||||| ||     
T  10178062 gctatttaaaaacgtcgggcaaaatgcgtttcaagaactcaatttcatcaataattgactgtttaataa-tagattaataatgttttttcaaatgtgaat 10177964  T
Q  110 caaataggttatttgcaagaaactcaatgttcatttaatttgt 152  Q
     |||||||||||||||||||||||||  || |||||| |||||    
T  10177963 -aaataggttatttgcaagaaactcaccgtccatttagtttgt 10177922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 44961548 - 44961470
Alignment:
Q  78 aatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    ||||||||||| |||||||||| ||||||||  ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  44961548 aatagattaatgatgtcttttcaaatgtaaat-aaataggttatttgcaagaaactcattgtccatttaatttgtctatg 44961470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 47368036 - 47367903
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    ||||||||| ||||||||||||||||   ||||||  |||||| ||  |||||||||||||| ||||  |||||| ||||| | | |||||||||| |||    
T  47368036 ttgacaatatctatttaaaaaagttggacaaaatgtgtttcaaaaaggcaattttatccatatttgattgtttacaaaatataatgataatgtcttctcc 47367937  T
Q  101 aatgtaaaacaaataggttatttgcaagaaactca 135  Q
    ||||| |||||| |||  |||||||||||||||||    
T  47367936 aatgt-aaacaattagactatttgcaagaaactca 47367903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 19313508 - 19313401
Alignment:
Q  48 ccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaa 147  Q
    ||||||| ||| ||||||||| ||||| ||| |||||||||||||||||||| ||||| ||| ||||| ||||||||||||||||||| | |  ||||||    
T  19313508 ccaatttcatcaataattgactgtttaataa-tagattaataatgtcttttcaaatgt-aaataaataagttatttgcaagaaactcactatctatttaa 19313411  T
Q  148 tttgtttatg 157  Q
    ||||| ||||    
T  19313410 tttgtctatg 19313401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 23614776 - 23614656
Alignment:
Q  30 aaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaaga 129  Q
    ||||||||||| ||||| ||||||| ||| ||||||| | ||||| ||| ||||||||||||| |||||  ||||||||  ||||| |||||||||||||    
T  23614776 aaaatgcatttgaagaacccaatttcatcaataattgtctgtttaataa-tagattaataatgactttttaaatgtaaat-aaatatgttatttgcaaga 23614679  T
Q  130 aactcaatgttcatttaatttgt 152  Q
    |||||| |||   ||||||||||    
T  23614678 aactcattgtctgtttaatttgt 23614656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 281
Target Start/End: Complemental strand, 23614495 - 23614402
Alignment:
Q  188 tagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctacccct 281  Q
    |||||| ||||||||||||| ||||||||| |||| ||| || ||| | | ||| |||| |||||  |||||||||||||||||||||||||||    
T  23614495 tagctcaatgtttattatttagggtagccggatataaatatataccgattaattcaagaataatactttttttggggtagccaaggctacccct 23614402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 1600502 - 1600650
Alignment:
Q  10 gctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatg---tcttttccaatgta 106  Q
    |||||||| ||| |||| ||||||| | ||||| ||| ||||||| ||| |||||||    |||| ||| ||||||||| |||   ||||||| ||||||    
T  1600502 gctatttagaaatgttgggtaaaatacgtttcaggaacccaatttcatcaataattgtttatttaataa-tagattaatgatgatttcttttcaaatgta 1600600  T
Q  107 aaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    ||  ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  1600601 aat-aaataggttatttgcaagaaactcattgtccatttaatttgtctatg 1600650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 29357232 - 29357169
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagc 215  Q
    |||||||||||||||||||||| || || |||||| |||||| || ||||||||||||||||||    
T  29357232 tttatgttaattttcggcaactaaacttatttggggtagctcaatatttattatttggggtagc 29357169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 273
Target Start/End: Complemental strand, 47367757 - 47367639
Alignment:
Q  154 tatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatat 253  Q
    |||| ||||||||| ||| || || |||||||| |||||| |||||||||||||| ||||||  ||||| |||  | ||||||| ||| || | ||| ||    
T  47367757 tatgctaattttcgacaattggatatgtttggggtagctcaatgtttattatttgaggtagcaaaatataaatacataccaactaattcaacaataa-at 47367659  T
Q  254 attttttggggtagccaagg 273  Q
    ||||||||||||||||||||    
T  47367658 attttttggggtagccaagg 47367639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 15757822 - 15757758
Alignment:
Q  92 gtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    |||||||| ||||||||  ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  15757822 gtcttttcaaatgtaaat-aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 15757758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 46515753 - 46515613
Alignment:
Q  12 tatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaaca 111  Q
    ||||||||||| ||| | |||| | |||| |||||  ||||||||||||| |||||| ||||| ||||||||||| |||||  |||| |||||| |||||    
T  46515753 tatttaaaaaatttgggcaaaacgtattttaagaactcaattttatccatgattgactgtttaataaatagattattaatg--tttttcaatgt-aaaca 46515657  T
Q  112 aataggttatttgcaagaaactcaatgttcatttaatttgtttat 156  Q
    || | ||||||| ||| ||||| | ||| | ||||||||||||||    
T  46515656 aacaagttattttcaa-aaacttattgtccttttaatttgtttat 46515613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 10620209 - 10620145
Alignment:
Q  92 gtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    |||||||| ||||||||  ||||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  10620209 gtcttttcaaatgtaaat-aaataggttattttcaagaaactcattgtacatttaatttgtctatg 10620145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 21972576 - 21972495
Alignment:
Q  12 tatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgt 93  Q
    ||||||||||| ||| | |||| | |||| |||||   ||||||||||||||||||| ||||| ||||||||||| ||||||    
T  21972576 tatttaaaaaatttgggcaaaacgtattttaagaagtaaattttatccataattgactgtttaataaatagattattaatgt 21972495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 49 - 130
Target Start/End: Original strand, 27696506 - 27696583
Alignment:
Q  49 caattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaa 130  Q
    |||||||||||||||||||  ||||| |||| |||||| ||||||||||| |||||||||   ||||||||||||| |||||    
T  27696506 caattttatccataattgattgtttaataaa-agattactaatgtctttt-caatgtaaa--caataggttatttgtaagaa 27696583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 19313266 - 19313217
Alignment:
Q  168 gcaactgaatttgtttgggatagctccatgtttattatttggggtagccg 217  Q
    ||||| |||| |||||||| |||||| || ||||||||||||||||||||    
T  19313266 gcaacggaatgtgtttggggtagctcaatatttattatttggggtagccg 19313217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 24134455 - 24134376
Alignment:
Q  49 caattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaa 130  Q
    ||||||||||||||||||||  |||  |||| |||||| |||||| ||||  ||||| ||||||||| ||||||||||||||    
T  24134455 caattttatccataattgactatttgataaaaagattattaatgt-tttttaaatgt-aaacaaatatgttatttgcaagaa 24134376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 5184644 - 5184737
Alignment:
Q  12 tatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaa 108  Q
    ||||||||||||||| | |||  |||||| ||| |  ||||||||| |||||||||| ||| | ||||||||||| ||||||||||| |||||||||    
T  5184644 tatttaaaaaagttgggcaaac-gcattttaaggagtcaattttatgcataattgactgttaa-taaatagattattaatgtctttt-caatgtaaa 5184737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 270; Significance: 1e-150; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 1780584 - 1780889
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1780584 ttgacgatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 1780683  T
Q  101 aatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatgttaattttcggcaactgaatttgtttgggatagctccatgttt 200  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||    
T  1780684 aatgtaaaacaaattggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcgacaactgaatttgtttggggtagctcaatgttt 1780783  T
Q  201 attatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaatgaagggatgcgc 300  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1780784 attatatggggtagccgaatattaatttacaccaactcattaaagattaatatattttttggggtagccaaggctaccccttgtcaatgaagggctgcgc 1780883  T
Q  301 ccctgc 306  Q
    ||||||    
T  1780884 ccctgc 1780889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 29486629 - 29486475
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    |||||||||| |||||| ||||||||||  |||| |||||||||||  ||| |||||||||||||||||||||||||||||||||| |||| | |||| |    
T  29486629 ttgacaatagttatttagaaaagttgtggcaaatacatttcaagaagtcaaatttatccataattgaccgtttactaaatagattattaatatatttttc 29486530  T
Q  101 aatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    ||||||| | ||||||||||||||||||||||| | ||| || ||||||||||||||    
T  29486529 aatgtaaga-aaataggttatttgcaagaaact-attgtccaattaatttgtttatg 29486475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 59 - 153
Target Start/End: Complemental strand, 24428919 - 24428827
Alignment:
Q  59 cataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtt 153  Q
    ||||| |||||||| ||||||||||||||||||||||||| |||||| || |||||||||||||| ||||||||||||||| |||||||||||||    
T  24428919 cataactgaccgtt-actaaatagattaataatgtctttttcaatgttaa-caaataggttattttcaagaaactcaatgtccatttaatttgtt 24428827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 22956385 - 22956490
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    ||||| |||||||||||||||||||   |||||||  ||||||||| |||||||||||||||| ||||  ||||| ||||||||||||||| | ||||||    
T  22956385 ttgacgatagctatttaaaaaagtttgataaaatgtgtttcaagaacccaattttatccataaatgactatttacaaaatagattaataatatattttcc 22956484  T
Q  101 aatgta 106  Q
    ||||||    
T  22956485 aatgta 22956490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 23832007 - 23831902
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    ||||| |||||||||||||||||||   |||||||  ||||||||| |||||||||||||||| ||||  ||||| ||||||||||||||| | ||||||    
T  23832007 ttgacgatagctatttaaaaaagtttgataaaatgtgtttcaagaacccaattttatccataaatgactatttacaaaatagattaataatatattttcc 23831908  T
Q  101 aatgta 106  Q
    ||||||    
T  23831907 aatgta 23831902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 78 - 157
Target Start/End: Original strand, 29363531 - 29363609
Alignment:
Q  78 aatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  29363531 aatagattaataatgtcttttcaaatgtaaat-aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 29363609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 175 - 283
Target Start/End: Complemental strand, 29486332 - 29486224
Alignment:
Q  175 aatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggc 274  Q
    ||||| ||||| ||||||| |||||||||||||| |||||||  |||| | |||| |||||   ||| |||| || ||||||||||||||||||||||||    
T  29486332 aatttatttggaatagctcgatgtttattatttgaggtagccagatataattttataccaaacaattgaagaatagtatattttttggggtagccaaggc 29486233  T
Q  275 taccccttg 283  Q
    |||||||||    
T  29486232 taccccttg 29486224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 31216230 - 31216346
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    |||| ||||||||||||||| |||||   ||||||  ||||||||| |||||||||||||||| ||||  ||||| |||||||||||||   | ||||||    
T  31216230 ttgaaaatagctatttaaaatagttggacaaaatgtgtttcaagaagccaattttatccataaatgactatttacaaaatagattaata---tattttcc 31216326  T
Q  101 aatgtaaaacaaataggttat 121  Q
    ||||| | |||||||||||||    
T  31216327 aatgt-acacaaataggttat 31216346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 21216563 - 21216466
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtctttt 98  Q
    ||||| |||||||||||||||||||   |||||||   ||||| || | |||||||||||||| ||||  ||||| ||||||||||||||||||||||    
T  21216563 ttgacgatagctatttaaaaaagttagataaaatgtgattcaaaaagcaaattttatccataaatgactatttacaaaatagattaataatgtctttt 21216466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 34729935 - 34729857
Alignment:
Q  78 aatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    |||||||||||||||||||||  ||||| ||  ||||||||||||||||||||||||| ||| ||||||| |||| ||||    
T  34729935 aatagattaataatgtctttttaaatgttaat-aaataggttatttgcaagaaactcattgtacatttaacttgtctatg 34729857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 156
Target Start/End: Original strand, 903975 - 904115
Alignment:
Q  12 tatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaaca 111  Q
    |||||||||||  || | |||||| |||| |||||   ||||||||||||||||||||||||| |||||| |||| |||||  |||| |||||| |||||    
T  903975 tatttaaaaaatgtgggcaaaatgtattttaagaagtaaattttatccataattgaccgtttaataaataaattattaatg--tttttcaatgt-aaaca 904071  T
Q  112 aataggttatttgcaagaaactcaatgttcatttaatttgtttat 156  Q
    || | ||||||| ||| ||||| | ||| | ||||||||||||||    
T  904072 aacaagttattttcaa-aaacttattgtccttttaatttgtttat 904115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 152 - 280
Target Start/End: Original strand, 904223 - 904352
Alignment:
Q  152 tttatgttaattttcggcaactgaa-tttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaa 250  Q
    |||||| |||||||||||||   || ||| |||||| |||||| || ||||||||||||||||||  ||| | | |||| | ||||  ||| |||| |||    
T  904223 tttatgctaattttcggcaaaccaagtttatttggggtagctcaatatttattatttggggtagctaaatgtaattttatatcaaccaattcaagaataa 904322  T
Q  251 tatattttttggggtagccaaggctacccc 280  Q
    | |||||||||||||||| |||||||||||    
T  904323 tttattttttggggtagcaaaggctacccc 904352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 280
Target Start/End: Complemental strand, 33224650 - 33224522
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 251  Q
    |||||||||||||||| ||||  || |||||| || |||||| || ||||||||||||||||||  ||||| ||| || ||||||  ||| |||| || |    
T  33224650 tttatgttaattttcgacaaccaaacttgtttagggtagctcaatatttattatttggggtagctaaatataaatatataccaaccaatttaagaatatt 33224551  T
Q  252 atattttttggggtagccaaggctacccc 280  Q
     | | |||||||||||| | |||||||||    
T  33224550 ttttattttggggtagcaagggctacccc 33224522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 282
Target Start/End: Original strand, 22956637 - 22956766
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 251  Q
    ||||||||| |||| ||||||| || ||||||||| |||||| || |||||||||||||||||| | ||||  ||  | ||||||| ||  |||| ||||    
T  22956637 tttatgttattttt-ggcaactaaacttgtttggggtagctcaatttttattatttggggtagctggatatagatacataccaactaatacaagaataat 22956735  T
Q  252 atattttttggggtagccaaggctacccctt 282  Q
       |||||| ||||||||||| |||||||||    
T  22956736 tattttttttgggtagccaagactacccctt 22956766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 282
Target Start/End: Complemental strand, 23831755 - 23831626
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 251  Q
    ||||||||| |||| ||||||| || ||||||||| |||||| || |||||||||||||||||| | ||||  ||  | ||||||| ||  |||| ||||    
T  23831755 tttatgttattttt-ggcaactaaacttgtttggggtagctcaatttttattatttggggtagctggatatagatacataccaactaatacaagaataat 23831657  T
Q  252 atattttttggggtagccaaggctacccctt 282  Q
       |||||| ||||||||||| |||||||||    
T  23831656 tattttttttgggtagccaagactacccctt 23831626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 24428692 - 24428622
Alignment:
Q  159 taattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaattta 229  Q
    ||||||||||||||||||||||||| || ||  || ||||||||||||| ||||| ||| |||| ||||||    
T  24428692 taattttcggcaactgaatttgtttagggtaattcaatgtttattatttagggtaaccggatataaattta 24428622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 8560093 - 8560153
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggt 212  Q
    |||||||||||||||||||||  || || |||||| |||||| || |||||||||||||||    
T  8560093 tttatgttaattttcggcaaccaaacttatttggggtagctcaatatttattatttggggt 8560153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 27673880 - 27673842
Alignment:
Q  243 aagattaatatattttttggggtagccaaggctacccct 281  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  27673880 aagaataatattttttttggggtagccaaggctacccct 27673842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 8559901 - 8559972
Alignment:
Q  49 caattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttg 124  Q
    |||||||||||||||||||  ||||| |||| |||||| ||||||||||| |||||||||   |||||||||||||    
T  8559901 caattttatccataattgattgtttaataaa-agattactaatgtctttt-caatgtaaa--caataggttatttg 8559972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 265; Significance: 1e-147; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 12491722 - 12491418
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  12491722 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattgtatccataattgaccgtttactaaatagattaataatgttttttcc 12491623  T
Q  101 aatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatgttaattttcggcaactgaatttgtttgggatagctccatgttt 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  12491622 aatgtaaaacaaataggttatttgcaagaaactcaatgtccatttaatttgtttatgttaattttcggcaactgaatttgtttggggcagctcaatgttt 12491523  T
Q  201 attatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaatgaagggatgcgc 300  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  12491522 gttatttggggtagccgaatattaatttgcaccaacttattaaagattaatatattttttggagtagccaaggctaccccttgtcaatgaagggttgcgc 12491423  T
Q  301 ccctg 305  Q
    |||||    
T  12491422 ccctg 12491418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 18882012 - 18881858
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    ||||||||| ||||||| |||| |||   |||||| ||||||||||  |||||||||||||||||||  |||||| ||||||||||||||||| ||||||    
T  18882012 ttgacaataactatttagaaaatttggacaaaatg-atttcaagaaggcaattttatccataattgattgtttacaaaatagattaataatgttttttcc 18881914  T
Q  101 aatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    ||||| ||||||||||||||||||||||||||||| ||  |||||||| ||||||||    
T  18881913 aatgt-aaacaaataggttatttgcaagaaactcattgcccatttaatatgtttatg 18881858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 33 - 157
Target Start/End: Original strand, 38172743 - 38172870
Alignment:
Q  33 atgcatttcaagaaaccaattttatccataattgaccgtttactaaata----gattaataatgtcttttccaatgtaaaacaaataggttatttgcaag 128  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||||||    |||||||||||| || ||||||||||| | ||||||||||||||||     
T  38172743 atgcatttcaaaaaaccaattttatccataattgagtgtttactaaatatatagattaataatgtattctccaatgtaaa-ctaataggttatttgcaat 38172841  T
Q  129 aaactcaatgttcatttaatttgtttatg 157  Q
    ||||||| |||||||||||||||||||||    
T  38172842 aaactcattgttcatttaatttgtttatg 38172870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 10 - 152
Target Start/End: Original strand, 38699683 - 38699823
Alignment:
Q  10 gctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaa 109  Q
    |||||||| ||| |||| | ||||||| ||||||||| ||||||| ||| ||||| ||| ||||| ||| |||||||||||||||||||| ||||||||     
T  38699683 gctatttagaaacgttgggcaaaatgcgtttcaagaacccaatttcatcaataatagactgtttaataa-tagattaataatgtcttttcaaatgtaaat 38699781  T
Q  110 caaataggttatttgcaagaaactcaatgttcatttaatttgt 152  Q
     ||||||||||||||||||||||||| | | ||||||||||||    
T  38699782 -aaataggttatttgcaagaaactcactctccatttaatttgt 38699823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 152 - 305
Target Start/End: Original strand, 6115131 - 6115284
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 251  Q
    ||||||||| |||| |||||||||| ||||||||| ||| || |||||||||||||  |||||| | ||||  ||  | ||||||| ||  |||| ||||    
T  6115131 tttatgttattttttggcaactgaacttgtttggggtagttcaatgtttattatttatggtagctggatatagatacataccaactaatacaagaataat 6115230  T
Q  252 atattttttggggtagccaaggctaccccttgtcaatgaagggatgcgcccctg 305  Q
    || ||||||||||||||||||||||||||||   |||||| |||| ||||||||    
T  6115231 attttttttggggtagccaaggctaccccttcctaatgaaaggatacgcccctg 6115284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 41570596 - 41570441
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaatttt-atccataattgaccgtttactaaatagattaataatgtcttttc 99  Q
    ||||| ||||||||||| ||||||||    |||||| ||||||||| |||||||| ||||||||||||  |||||| ||||||||||||  ||| ||||     
T  41570596 ttgaccatagctatttagaaaagttggactaaatgcgtttcaagaagccaatttttatccataattgattgtttacaaaatagattaatgttgt-ttttt 41570498  T
Q  100 caatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
     || || ||||||||||||||||||||||||||||| |  ||||||||| ||||||||    
T  41570497 taaggt-aaacaaataggttatttgcaagaaactcattactcatttaatatgtttatg 41570441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 43115347 - 43115234
Alignment:
Q  31 aaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaa 130  Q
    |||||| ||||||||| ||||||| ||| ||||||||| ||||| ||| |||||||||||||| ||||| ||||||||  ||||| ||||||||||||||    
T  43115347 aaatgcgtttcaagaacccaatttcatcaataattgactgtttaataa-tagattaataatgttttttcaaatgtaaat-aaatatgttatttgcaagaa 43115250  T
Q  131 actcaatgttcattta 146  Q
    ||||| ||| ||||||    
T  43115249 actcactgtccattta 43115234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 13541357 - 13541491
Alignment:
Q  13 atttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaa 112  Q
    ||||||||| |||| | ||||||| |||| ||||  |||||| |||  |||||| | |||||  ||||||||||||||| ||||||| ||||||||  ||    
T  13541357 atttaaaaacgttgggcaaaatgcgtttcgagaactcaatttcatcactaattgtctgttta--aaatagattaataatatcttttcaaatgtaaat-aa 13541453  T
Q  113 ataggttatttgcaagaaactcaatgttcatttaattt 150  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  13541454 ataggttatttgcaagaaactcattgtccatttaattt 13541491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 13683116 - 13682982
Alignment:
Q  13 atttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaa 112  Q
    ||||||||| |||| | ||||||| |||| ||||  |||||| |||  |||||| | |||||  ||||||||||||||| ||||||| ||||||||  ||    
T  13683116 atttaaaaacgttgggcaaaatgcgtttcgagaactcaatttcatcactaattgtctgttta--aaatagattaataatatcttttcaaatgtaaat-aa 13683020  T
Q  113 ataggttatttgcaagaaactcaatgttcatttaattt 150  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  13683019 ataggttatttgcaagaaactcattgtccatttaattt 13682982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 160 - 282
Target Start/End: Complemental strand, 41570311 - 41570189
Alignment:
Q  160 aattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttt 259  Q
    ||||||||||||||||| || |||||| |||||| || |||||||||||||||||| |||||| |||  | ||| ||  | | ||||  |||||  ||||    
T  41570311 aattttcggcaactgaacttttttggggtagctcaatatttattatttggggtagctgaatataaatacatacctaccaactcaagaaaaatattgtttt 41570212  T
Q  260 tggggtagccaaggctacccctt 282  Q
    |||||||||||||||||||||||    
T  41570211 tggggtagccaaggctacccctt 41570189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 152 - 305
Target Start/End: Complemental strand, 32415797 - 32415644
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 251  Q
    ||||| |||||||| | ||||| ||||| |||||| || ||| |||||||||||||  ||| |||  |||| | |||| ||||||  ||| |||| ||||    
T  32415797 tttatattaatttttgacaacttaatttatttggggtaactcaatgtttattatttaaggttgccagatataagtttataccaaccaattgaagaataat 32415698  T
Q  252 atattttttggggtagccaaggctaccccttgtcaatgaagggatgcgcccctg 305  Q
    ||||||||| |||||||||| | |||||||||||  ||||||| | ||||||||    
T  32415697 atatttttttgggtagccaaagttaccccttgtcgttgaagggctacgcccctg 32415644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 6114886 - 6114984
Alignment:
Q  7 atagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgta 106  Q
    ||||||||||||||||| ||  |||||||  ||||||||| ||||||||||||||||  |||  ||||  ||||||||||||||| | ||||||||||||    
T  6114886 atagctatttaaaaaagctggataaaatgtgtttcaagaa-ccaattttatccataaaggactatttataaaatagattaataatatattttccaatgta 6114984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 4072227 - 4072291
Alignment:
Q  92 gtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    |||||||| ||||||||  ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  4072227 gtcttttcaaatgtaaat-aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 4072291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 21441593 - 21441657
Alignment:
Q  92 gtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    |||||||| ||||||||  ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  21441593 gtcttttcaaatgtaaat-aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 21441657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 52 - 157
Target Start/End: Complemental strand, 40118247 - 40118144
Alignment:
Q  52 ttttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttg 151  Q
    |||| |||||||||||  ||||||||  |||||||||||| | ||||| |||||||| | ||||| |||||||||| ||| ||| ||| |||||||||||    
T  40118247 ttttttccataattgagtgtttactaggtagattaataatatattttc-aatgtaaa-ctaatagattatttgcaataaattcattgtccatttaatttg 40118150  T
Q  152 tttatg 157  Q
    ||||||    
T  40118149 tttatg 40118144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 1233756 - 1233840
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaac 236  Q
    |||||||||||||||||||||  || ||| ||||| |||||| || ||||||||||||||||||  ||||| ||| || ||||||    
T  1233756 tttatgttaattttcggcaaccaaacttgcttggggtagctcaatatttattatttggggtagctaaatataaatatataccaac 1233840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 41323181 - 41323245
Alignment:
Q  92 gtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    |||||||| ||||||||  |||||| |||||||||||||||||| ||| |||||||||||| ||||    
T  41323181 gtcttttcaaatgtaaat-aaatagtttatttgcaagaaactcattgtacatttaatttgtctatg 41323245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 13641112 - 13641196
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaac 236  Q
    |||||||||||||||||||||  || ||| ||||| |||||| || ||||||||||| ||||||  ||||| ||| || ||||||    
T  13641112 tttatgttaattttcggcaaccaaacttgcttggggtagctcaatatttattatttgaggtagctaaatataaatatataccaac 13641196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 13741524 - 13741608
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaac 236  Q
    |||||||||||||||||||||  || ||| ||||| |||||| || ||||||||||| ||||||  ||||| ||| || ||||||    
T  13741524 tttatgttaattttcggcaaccaaacttgcttggggtagctcaatatttattatttgaggtagctaaatataaatatataccaac 13741608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 49 - 130
Target Start/End: Original strand, 1233564 - 1233641
Alignment:
Q  49 caattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaa 130  Q
    |||||||||||||||||||  ||||| |||| |||||| ||||||||||| |||||||||   ||||||||||||| |||||    
T  1233564 caattttatccataattgattgtttaataaa-agattactaatgtctttt-caatgtaaa--caataggttatttgtaagaa 1233641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 49 - 130
Target Start/End: Original strand, 13640920 - 13640997
Alignment:
Q  49 caattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaa 130  Q
    |||||||||||||||||||  ||||| |||| |||||| ||||||||||| |||||||||   ||||||||||||| |||||    
T  13640920 caattttatccataattgattgtttaataaa-agattactaatgtctttt-caatgtaaa--caataggttatttgtaagaa 13640997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 49 - 130
Target Start/End: Original strand, 13741332 - 13741409
Alignment:
Q  49 caattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaa 130  Q
    |||||||||||||||||||  ||||| |||| |||||| ||||||||||| |||||||||   ||||||||||||| |||||    
T  13741332 caattttatccataattgattgtttaataaa-agattactaatgtctttt-caatgtaaa--caataggttatttgtaagaa 13741409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 111 - 149
Target Start/End: Complemental strand, 33613745 - 33613707
Alignment:
Q  111 aaataggttatttgcaagaaactcaatgttcatttaatt 149  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  33613745 aaataggttatttgcaagaaactcattgtccatttaatt 33613707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 209
Target Start/End: Original strand, 38172982 - 38173039
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttgg 209  Q
    ||||| |||||||||  ||| |||| ||||||||| |||||| |||||||||||||||    
T  38172982 tttatcttaattttcaacaattgaacttgtttggggtagctcaatgtttattatttgg 38173039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 265; Significance: 1e-147; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 16546510 - 16546206
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16546510 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 16546411  T
Q  101 aatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatgttaattttcggcaactgaatttgtttgggatagctccatgttt 200  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||    
T  16546410 aatgtaaaacaaataggttatttggaagaaactcaatgtccatttaatttgtttatgttaattttcggcaactgaatttgtttagggtagctcaatgttt 16546311  T
Q  201 attatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaatgaagggatgcgc 300  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| | |||||    
T  16546310 attatttggggtagccgaatataaatttacaccaacttattaaagtttaatatattttttggggtagccaaggctaacccttgtcaatgaagagttgcgc 16546211  T
Q  301 ccctg 305  Q
    |||||    
T  16546210 ccctg 16546206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 4 - 294
Target Start/End: Original strand, 45655891 - 45656180
Alignment:
Q  4 acaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaat 103  Q
    ||||||||||||||||||||||| |||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  45655891 acaatagctatttaaaaaagttgggtaaaatgcatttcaaaaagccaattttattcataattgaccgtttactaaatagattaataatgtctttttcaat 45655990  T
Q  104 gtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatgttaattttcggcaactgaatttgtttgggatagctccatgtttatt 203  Q
    ||||| |||||||||||||||||||||| ||||||| ||||| | ||||||||| ||  ||||| |||||||||||||||||| |||||| || ||||||    
T  45655991 gtaaa-caaataggttatttgcaagaaattcaatgtccatttcaattgtttatgctagctttcgacaactgaatttgtttggggtagctcaatatttatt 45656089  T
Q  204 atttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaatgaaggg 294  Q
    |||||||||||||||| || |||||| ||||||  |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  45656090 atttggggtagccgaaaataaatttataccaaccaattaaaaattaatatattttttggggtagccaaggctaccccttgccaatgaaggg 45656180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 39070152 - 39070338
Alignment:
Q  17 aaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaatag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39070152 aaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaatag 39070251  T
Q  117 gttatttgcaagaaactcaatgttcatttaatttgtttatgttaattttcggcaactgaatttgtttgggatagctccatgtttatt 203  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| || || ||| |||||||||    
T  39070252 gttatttgcaagaaactcaatgtccatttaatttatttatgttaattttcggcaactgaatttgtttagggtatctcaatgtttatt 39070338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 37614748 - 37614532
Alignment:
Q  2 tgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcca 101  Q
    |||||||||  ||| |||||||||| ||||||||||||||||||| |||| ||||| |||||||  ||||||||||||||||||||||||||||||||||    
T  37614748 tgacaatagaaattaaaaaaagttgggtaaaatgcatttcaagaagccaaatttattcataattagccgtttactaaatagattaataatgtcttttcca 37614649  T
Q  102 atgta--aaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatgttaattttcggcaactgaatttgtttgggatagctccatgtt 199  Q
    |||||  ||||||||||||||||||||||||| |||||||  |||||||||||||||| ||||||||| | | | |||||| ||||| | |||| |||||    
T  37614648 atgtagtaaacaaataggttatttgcaagaaattcaatgtctatttaatttgtttatgctaattttcgacgattaaatttgcttggggtggctcaatgtt 37614549  T
Q  200 tattatttggggtagcc 216  Q
    |||||||||||||||||    
T  37614548 tattatttggggtagcc 37614532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 42799097 - 42799253
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattga-ccgtttactaaatagattaataatgtcttttc 99  Q
    ||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||| |  |||||||||||||||||||||||||||||    
T  42799097 ttgacaatagctatttaaaaaagttggataaaatgcatttcaagaagccaattttatccataattgatcattttactaaatagattaataatgtcttttc 42799196  T
Q  100 caatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    |||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  42799197 caatgt-aaacaaatagtttatttgcaagaaactcaatgtccatttaatttgtttatg 42799253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 189 - 304
Target Start/End: Original strand, 39070355 - 39070459
Alignment:
Q  189 agctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaat 288  Q
    ||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||           |||||||||||||||    
T  39070355 agctcaatgtttattatttgaggtagccgaatataaatttacaccaacttattaaagattaatatattttttgg-----------ctaccccttgtcaat 39070443  T
Q  289 gaagggatgcgcccct 304  Q
    |||||| |||||||||    
T  39070444 gaagggctgcgcccct 39070459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 4435417 - 4435287
Alignment:
Q  12 tatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaaca 111  Q
    |||||| ||| |||| | |||||||||||||||||  |||||| ||||||||||| | ||||| ||| |||||||||||||||||||| ||||| ||| |    
T  4435417 tatttagaaacgttgggcaaaatgcatttcaagaactcaatttcatccataattgtctgtttaataa-tagattaataatgtcttttcaaatgt-aaata 4435320  T
Q  112 aataggttatttgcaagaaactcaatgttcatt 144  Q
    |||||||||||| ||||||||||| ||| ||||    
T  4435319 aataggttatttacaagaaactcattgtccatt 4435287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 482 - 568
Target Start/End: Original strand, 30760458 - 30760544
Alignment:
Q  482 accccttccacaccctcgatctgaacaccattaacattattagagataatcacattcgaccttctccgagaggacatcaccccatgg 568  Q
    ||||||||||||||||| | |||||||||||| |||||| |||| ||||| ||||| |||||||||||| | |||||||| ||||||    
T  30760458 accccttccacaccctctacctgaacaccatttacattaatagaaataatgacatttgaccttctccgaaaagacatcactccatgg 30760544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 477 - 574
Target Start/End: Original strand, 13534994 - 13535092
Alignment:
Q  477 tcctcaccccttccacaccctcgatctgaacaccattaacattattagagataatcacattcga-ccttctccgagaggacatcaccccatggaaaaaa 574  Q
    ||||| |||||||||||||||  ||||||||||| ||||||||| |||| ||||||||| | || || ||||| ||| |||| ||||||||||||||||    
T  13534994 tcctcgccccttccacacccttaatctgaacacctttaacattaatagaaataatcacagttgacccgtctcctagaagacaccaccccatggaaaaaa 13535092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 308
Target Start/End: Complemental strand, 26180544 - 26180406
Alignment:
Q  169 caactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagc 268  Q
    ||||| || ||||||| | |||||| || |||||||||||  |||||   |||| |||  | ||||||| ||| || |||||||||||||||||| ||||    
T  26180544 caactaaacttgtttgaggtagctcaatatttattatttgaagtagctagatataaatacataccaactaattcaaaattaatatattttttggg-tagc 26180446  T
Q  269 caaggctaccccttgtcaatgaagggatgcgcccctgctt 308  Q
    ||||||||| ||||||  |||||||| | |||||||||||    
T  26180445 caaggctactccttgtatatgaagggctacgcccctgctt 26180406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 481 - 548
Target Start/End: Original strand, 30758317 - 30758384
Alignment:
Q  481 caccccttccacaccctcgatctgaacaccattaacattattagagataatcacattcgaccttctcc 548  Q
    |||||||||||||||||| | |||||||||||| |||||| |||| ||||| ||||| ||||||||||    
T  30758317 caccccttccacaccctctacctgaacaccatttacattaatagaaataatgacatttgaccttctcc 30758384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 21746092 - 21746221
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    ||||||| ||||||||||||||||||   | ||  |||||||| ||| ||||||||| | |||||||  || ||||||||||| |||||||||| ||| |    
T  21746092 ttgacaaaagctatttaaaaaagttggacacaa--catttcaaaaaatcaattttattcttaattgattgtatactaaatagactaataatgtcattttc 21746189  T
Q  101 aatgtaaaacaaataggttatttgcaagaaact 133  Q
    ||||| ||| ||||| |||| ||||| ||||||    
T  21746190 aatgt-aaataaataagttacttgcatgaaact 21746221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 14802660 - 14802768
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaa-tagattaataatgtcttttc 99  Q
    ||||||| | ||||||| ||||||||   |||| || ||||||||| ||||||||||  ||||||||  |||||| ||| |||||||||||||| |||||    
T  14802660 ttgacaacaactatttagaaaagttggacaaaacgcgtttcaagaagccaattttatttataattgattgtttacaaaaatagattaataatgttttttc 14802759  T
Q  100 caatgtaaa 108  Q
     ||||||||    
T  14802760 taatgtaaa 14802768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 152 - 306
Target Start/End: Original strand, 8230376 - 8230531
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 251  Q
    ||||||||||||||   ||| | |||||||||||| |||||  || ||| ||||||||||||||  ||||| ||   | |||||| |||| |||| ||||    
T  8230376 tttatgttaatttttaacaaataaatttgtttggggtagctaaatattttttatttggggtagctaaatataaaaacataccaacatattcaagaataat 8230475  T
Q  252 a-tattttttggggtagccaaggctaccccttgtcaatgaagggatgcgcccctgc 306  Q
    | | |||||||||||||||| ||||||| | ||  ||||||||||  |||||||||    
T  8230476 acttttttttggggtagccatggctacctcatgctaatgaagggaaccgcccctgc 8230531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 35524694 - 35524747
Alignment:
Q  73 tactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaa 127  Q
    ||||||||||| |||||||||||||| |||||| ||||||||| |||||||||||    
T  35524694 tactaaatagactaataatgtctttttcaatgt-aaacaaataagttatttgcaa 35524747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 42799349 - 42799420
Alignment:
Q  159 taattttcggcaactgaatttgtttgggatagctccatgtttattattt-ggggtagccgaatattaattta 229  Q
    |||| ||||| ||||||||||||||||  |||||  ||||||||||||| |||||||| |||||| ||||||    
T  42799349 taatattcggaaactgaatttgtttggtgtagctgaatgtttattatttgggggtagctgaatataaattta 42799420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 305
Target Start/End: Original strand, 35524913 - 35525066
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 251  Q
    ||||||||||||||   ||| | ||||| |||||| |||||  || ||| ||||||||||||||  ||||| ||   | |||||| |||| ||||  |||    
T  35524913 tttatgttaatttttaacaaataaatttatttggggtagctaaatattttttatttggggtagctaaatataaaaacataccaacatattcaagaaaaat 35525012  T
Q  252 atattttttggggtagccaaggctaccccttgtcaatgaagggatgcgcccctg 305  Q
    |  |||||||||||||||| ||||||| | ||  ||||||||||  ||||||||    
T  35525013 aatttttttggggtagccatggctacctcatgctaatgaagggaaccgcccctg 35525066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 38881857 - 38881794
Alignment:
Q  30 aaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtc 94  Q
    ||||| ||||||||||| ||||||| ||| ||||||| | ||||| | |||||||||||||||||    
T  38881857 aaaatacatttcaagaacccaatttcatctataattgtctgtttaat-aatagattaataatgtc 38881794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 39069991 - 39070019
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgt 29  Q
    |||||||||||||||||||||||||||||    
T  39069991 ttgacaatagctatttaaaaaagttgtgt 39070019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 4 - 305
Target Start/End: Complemental strand, 22786180 - 22785880
Alignment:
Q  4 acaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaat 103  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22786180 acaatagctatttaaaaaagttgggtaaaatgcatttcaagaagccaattttatccataatcgaccgtttactaaatagattaataatgtcttttccaat 22786081  T
Q  104 gtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatgttaattttcggcaactgaatttgtttgggatagctccatgtttatt 203  Q
    ||||| |||||||||||||||||||||| ||||||| ||||||| ||||||||| ||  ||||| |||||||||||||||||| |||||| |||||||||    
T  22786080 gtaaa-caaataggttatttgcaagaaattcaatgtccatttaaattgtttatgctagctttcgacaactgaatttgtttggggtagctcaatgtttatt 22785982  T
Q  204 atttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaatgaagggatgcgcccc 303  Q
    |||||||||||||||| || |||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||    
T  22785981 atttggggtagccgaaaataaatttataccaaccaattaaagattaatatattttttggggtagccaaggctaccccttgccaatgaagggctacgcccc 22785882  T
Q  304 tg 305  Q
    ||    
T  22785881 tg 22785880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 6016752 - 6017044
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    |||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  6016752 ttgacaatagctatttaaaaaagttgggtaaaatgcatttcaataagccaattttatccataattgaccgtttactaaatagattaataatgtctttttc 6016851  T
Q  101 aatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatgttaattttcggcaactgaatttgtttgggatagctccatgttt 200  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||| ||  ||||| |||||||||||||||||| |||||| ||||||    
T  6016852 aatgtaaa-caaataggttatttgcaagaaactcaatgtacatttaaattgtttatgctagctttcgacaactgaatttgtttggggtagctcaatgttt 6016950  T
Q  201 attatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaatgaaggg 294  Q
    |||||||||||||||| || || |||||| ||||||  |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  6016951 attatttggggtagccaaaaataaatttataccaaccaattaaagattaatataatttttggggtagccaaggctaccccttgccaatgaaggg 6017044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 4 - 294
Target Start/End: Complemental strand, 2407308 - 2407018
Alignment:
Q  4 acaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtctttt-ccaa 102  Q
    ||||||||||||||||||||||| |||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  2407308 acaatagctatttaaaaaagttgagtaaaatgcatttcaagaagtcaattttatcaataattgaccgtttactaaatagattaataatgtctttttccaa 2407209  T
Q  103 tgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatgttaattttcggcaactgaatttgtttgggatagctccatgtttat 202  Q
    |||||| |||||||||||||||||||||| ||||||| ||||||| ||||||||| ||  ||||| |||||||||||  ||||| |||||| ||||||||    
T  2407208 tgtaaa-caaataggttatttgcaagaaattcaatgtccatttaaattgtttatgctagctttcgacaactgaatttagttggggtagctcaatgtttat 2407110  T
Q  203 tatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaatgaaggg 294  Q
    ||||||||||||| ||| || |||||| ||||||  ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  2407109 tatttggggtagctgaaaataaatttataccaaccaattaaagattaatatattttttgaggtagccaaggctaccccttgccaatgaaggg 2407018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 12 - 157
Target Start/End: Complemental strand, 21790919 - 21790774
Alignment:
Q  12 tatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaaca 111  Q
    |||||| |||||||| ||||||||||||| |||||  ||||||| |||||||||||  ||||||||| ||||||||||||||||||||||| || ||| |    
T  21790919 tatttagaaaagttgggtaaaatgcattttaagaagtcaattttgtccataattgattgtttactaactagattaataatgtcttttccaa-gt-aaata 21790822  T
Q  112 aataggttatttgc--aagaaactcaatgttcatttaatttgtttatg 157  Q
    ||||||||||||||  || ||||||| ||| ||||| |||||||||||    
T  21790821 aataggttatttgcaaaaaaaactcattgtccattttatttgtttatg 21790774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 33 - 157
Target Start/End: Complemental strand, 52628421 - 52628294
Alignment:
Q  33 atgcatttcaagaaaccaattttatccataattgaccgtttactaaata----gattaataatgtcttttccaatgtaaaacaaataggttatttgcaag 128  Q
    |||||||||||||||||| ||||||  ||||||||  ||||||||||||    |||||||||| | |||||||||||||| | ||||||||||||||||     
T  52628421 atgcatttcaagaaaccagttttataaataattgagtgtttactaaatatatagattaataatatattttccaatgtaaa-ctaataggttatttgcaat 52628323  T
Q  129 aaactcaatgttcatttaatttgtttatg 157  Q
    ||||||| |||||||||||||| ||||||    
T  52628322 aaactcattgttcatttaatttatttatg 52628294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 54165882 - 54166031
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    |||||||||| |||| | ||||||||   |||||| ||||||||||| ||||||| ||||||||||| || |||     |||||||||||||| |||| |    
T  54165882 ttgacaatagttatt-agaaaagttggacaaaatgtatttcaagaaatcaattttttccataattgagcgatta-----tagattaataatgtatttttc 54165975  T
Q  101 aatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    |||||||| | |||||||||||||||| ||||||| ||| |||||||||| ||||||    
T  54165976 aatgtaaa-ctaataggttatttgcaataaactcattgtccatttaatttatttatg 54166031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 17815897 - 17815992
Alignment:
Q  3 gacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtctttt 98  Q
    |||||||||||||||||||||||| | ||||||| ||| |||||  |||||||||||||| ||||  |||||| ||||||||||||||||| ||||    
T  17815897 gacaatagctatttaaaaaagttgggcaaaatgcgtttaaagaagtcaattttatccatagttgattgtttacaaaatagattaataatgtttttt 17815992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 168 - 281
Target Start/End: Complemental strand, 48861873 - 48861760
Alignment:
Q  168 gcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtag 267  Q
    |||||| || || |||||| |||||  |||||||||||||||||||||||||||| ||| || ||| | | ||| |||| |||||  |||||||||||||    
T  48861873 gcaactaaacttatttggggtagcttaatgtttattatttggggtagccgaatataaatatataccgattaattcaagaataatactttttttggggtag 48861774  T
Q  268 ccaaggctacccct 281  Q
    ||||||||||||||    
T  48861773 ccaaggctacccct 48861760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 8745633 - 8745778
Alignment:
Q  10 gctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaa 109  Q
    |||||||| ||| |||| | ||||||  |||| |||| ||||||| ||| ||||||| |  |||| ||| |||||||||||||||||||| ||||| |||    
T  8745633 gctatttagaaacgttgggcaaaatgtgtttcgagaacccaatttcatcaataattgcctatttaataa-tagattaataatgtcttttcaaatgt-aaa 8745730  T
Q  110 caaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
     |||||||||||| | |||||||||| ||| |||||||||||| ||||    
T  8745731 taaataggttattcgtaagaaactcattgtccatttaatttgtctatg 8745778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 152 - 280
Target Start/End: Complemental strand, 21790652 - 21790525
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 251  Q
    |||||||||||||||||||||||||||| |||  | | |||| || |||||||||| ||||||  |||||| |||||| | |||||  || |||| ||||    
T  21790652 tttatgttaattttcggcaactgaatttatttatggtggctcaatatttattatttagggtagttgaatataaatttataacaactatttgaagaataat 21790553  T
Q  252 atattttttggggtagccaaggctacccc 280  Q
    |||||||||||| || || ||||||||||    
T  21790552 atattttttgggataacc-aggctacccc 21790525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 48841262 - 48841184
Alignment:
Q  78 aatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    |||||||||||||||||||||| ||||||||  |||||||||||||||||||||| || | | |||||||||||| ||||    
T  48841262 aatagattaataatgtcttttcaaatgtaaat-aaataggttatttgcaagaaacccattatccatttaatttgtctatg 48841184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 30 - 152
Target Start/End: Complemental strand, 48862134 - 48862014
Alignment:
Q  30 aaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaaga 129  Q
    ||||||||||| ||||| ||||||| ||| ||||||| | ||||| ||| ||||||||||||| |||||  ||||||||  ||||| |||||||||||||    
T  48862134 aaaatgcatttgaagaacccaatttcatcaataattgtctgtttaataa-tagattaataatgactttttaaatgtaaat-aaatatgttatttgcaaga 48862037  T
Q  130 aactcaatgttcatttaatttgt 152  Q
    |||||| |||   ||||||||||    
T  48862036 aactcattgtctgtttaatttgt 48862014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 11950697 - 11950592
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    ||||||||||||||||| ||||||||   |||||    |||||||| ||||||| || ||||| ||||  ||||| |||||||||||| |||||||||||    
T  11950697 ttgacaatagctatttagaaaagttggacaaaatctgcttcaagaagccaatttaattcataaatgactatttacaaaatagattaatgatgtcttttcc 11950598  T
Q  101 aatgta 106  Q
     |||||    
T  11950597 gatgta 11950592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 179 - 274
Target Start/End: Complemental strand, 48841043 - 48840949
Alignment:
Q  179 tgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggc 274  Q
    |||||||| |||||| ||||||||||||| ||||||||| |||| |||  | ||| ||  |||||||| |||| | ||||||||||||||||||||    
T  48841043 tgtttggggtagctcaatgtttattatttagggtagccggatataaatacataccgacgaattaaagaataat-ttttttttggggtagccaaggc 48840949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 52628170 - 52628100
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatat 222  Q
    ||||| |||||||||  ||| |||| ||||||||| |||||| |||||||||||||| |||||||| ||||    
T  52628170 tttatcttaattttcaacaattgaacttgtttggggtagctcaatgtttattatttgaggtagccggatat 52628100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 305
Target Start/End: Original strand, 8762829 - 8762982
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 251  Q
    ||||||||||||||   ||| | ||||| |||||| |||||  || ||| ||||||||||||||  ||||| ||  || |||||| |||| ||||  |||    
T  8762829 tttatgttaatttttaacaaataaatttatttggggtagctaaatattttttatttggggtagctaaatataaaaatataccaacatattcaagaacaat 8762928  T
Q  252 atattttttggggtagccaaggctaccccttgtcaatgaagggatgcgcccctg 305  Q
    |  |||||||||||||||| ||||||| | ||  ||||||||||  ||||||||    
T  8762929 actttttttggggtagccatggctacctcatgctaatgaagggaaccgcccctg 8762982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 43892522 - 43892586
Alignment:
Q  92 gtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    |||||||| ||||||||  ||||||||||||||||||||||||| ||  |||||||||||| ||||    
T  43892522 gtcttttcaaatgtaaat-aaataggttatttgcaagaaactcattgcacatttaatttgtctatg 43892586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 16608578 - 16608662
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaac 236  Q
    ||||||||||||||||| |||  || || |||||| |||||| || ||||||||||||||||||  ||||| ||| || ||||||    
T  16608578 tttatgttaattttcggtaaccaaacttttttggggtagctcaatatttattatttggggtagctaaatataaatatataccaac 16608662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 8762614 - 8762664
Alignment:
Q  73 tactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttg 124  Q
    ||||||||||| |||||||||||||| |||||| ||||||||| ||||||||    
T  8762614 tactaaatagactaataatgtctttttcaatgt-aaacaaataagttatttg 8762664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 5476394 - 5476447
Alignment:
Q  73 tactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaa 127  Q
    ||||||||| | |||||||||||||| |||||| ||||||||| |||||||||||    
T  5476394 tactaaatacactaataatgtctttttcaatgt-aaacaaataagttatttgcaa 5476447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 54166160 - 54166216
Alignment:
Q  159 taattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagc 215  Q
    ||||||| | |||||||| ||||||| | |||||| |||||||||||||||| ||||    
T  54166160 taattttagacaactgaacttgtttgaggtagctcaatgtttattatttgggatagc 54166216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 151; Significance: 1e-79; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 28 - 294
Target Start/End: Original strand, 40528127 - 40528392
Alignment:
Q  28 gtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaa 127  Q
    ||||||||||||||||||| ||||||||||| ||| |||| |||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||| ||    
T  40528127 gtaaaatgcatttcaagaagccaattttatctatatttgatcgtttactaaattgattaataatgtctttttcaatgtaaa-caaataggttatttgtaa 40528225  T
Q  128 gaaactcaatgttcatttaatttgtttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatt 227  Q
    |||||||||| | || |||||||||||||| || ||||||||||||||||||| ||||| |||||| ||||||||||||| || ||| ||||||| ||||    
T  40528226 gaaactcaatatccacttaatttgtttatgctagttttcggcaactgaatttgcttggggtagctcaatgtttattatttaggatagtcgaatataaatt 40528325  T
Q  228 tacaccaacttattaaagattaatatattttttggggtagccaaggctaccccttgtcaatgaaggg 294  Q
    || ||||||  ||||||||||||||||||||||  |||||||||| ||| |||||| ||||||||||    
T  40528326 tataccaaccaattaaagattaatatattttttaaggtagccaagactatcccttgccaatgaaggg 40528392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 16908564 - 16908717
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    |||||||||  |||||| |||||||| |||||||||||||||| || |||| |||||||||||||||| |||||||||||||||||||||||| |||| |    
T  16908564 ttgacaataattatttagaaaagttgggtaaaatgcatttcaaaaagccaaatttatccataattgactgtttactaaatagattaataatgtatttttc 16908663  T
Q  101 aatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttat 156  Q
    ||||| |||||||||||||| ||| |||||||| | ||| |||||||||| |||||    
T  16908664 aatgt-aaacaaataggttacttgaaagaaact-attgtccatttaatttatttat 16908717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 40360949 - 40361080
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    |||| ||||| ||||||||||| ||| | ||||||| ||||||||   |||||||||||||||||||| |||||| ||||||||||||||||||||||      
T  40360949 ttgaaaatagttatttaaaaaatttgggcaaaatgcttttcaagat--caattttatccataattgactgtttacaaaatagattaataatgtcttttat 40361046  T
Q  101 aatgtaaaacaaataggttatttgcaagaaactca 135  Q
     || | |||||||||||||||||||||||||||||    
T  40361047 gatct-aaacaaataggttatttgcaagaaactca 40361080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 153 - 294
Target Start/End: Original strand, 16908840 - 16908979
Alignment:
Q  153 ttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaata 252  Q
    |||||||||| |||  |||||||||||||||||| |||||| || ||||||||||| |||||||| |||| ||| || ||||||  | | |||| |||||    
T  16908840 ttatgttaatattcaacaactgaatttgtttggg-tagctcaatatttattatttgaggtagccggatataaatatataccaaccaaatgaagaataata 16908938  T
Q  253 tattttttggggtagccaaggctaccccttgtcaatgaaggg 294  Q
    | ||||||||||||||||||||| ||||||||| ||||||||    
T  16908939 t-ttttttggggtagccaaggctgccccttgtccatgaaggg 16908979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 34034230 - 34034105
Alignment:
Q  30 aaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaaga 129  Q
    ||||||||||| ||||| ||||||| ||| |||| || | ||||| ||| |||||||||||||||||||| ||||||||  ||||| |||||||||||||    
T  34034230 aaaatgcatttgaagaacccaatttcatcaataactgtctgtttaataa-tagattaataatgtcttttcaaatgtaaat-aaataagttatttgcaaga 34034133  T
Q  130 aactcaatgttcatttaatttgtttatg 157  Q
    |||||| ||| |||||||||||| ||||    
T  34034132 aactcattgtccatttaatttgtctatg 34034105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 17695850 - 17695969
Alignment:
Q  31 aaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaa 130  Q
    |||||| ||||||||| ||||||| ||| ||||||||| ||||| ||| |||||||||||||| ||||| ||||||||  ||||| ||||||||||||||    
T  17695850 aaatgcgtttcaagaacccaatttcatcaataattgactgtttaataa-tagattaataatgttttttcaaatgtaaat-aaataagttatttgcaagaa 17695947  T
Q  131 actcaatgttcatttaatttgt 152  Q
    ||||| ||| |||||| |||||    
T  17695948 actcactgtccatttagtttgt 17695969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 7009061 - 7008942
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    ||||||||| |||||||| |||||||   |||||   ||||||||||||||||||||||||||  ||  |||||| |||||||||||||||| |||||||    
T  7009061 ttgacaatatctatttaacaaagttggacaaaatctgtttcaagaaaccaattttatccataaacgattgtttacaaaatagattaataatgccttttcc 7008962  T
Q  101 aatgtaaaacaaataggttat 121  Q
    ||||| | |||||||||||||    
T  7008961 aatgt-acacaaataggttat 7008942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 78 - 157
Target Start/End: Original strand, 41640054 - 41640132
Alignment:
Q  78 aatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    |||||||||||||||||||||| ||||||||  ||||| ||||||||||||||||||| ||| |||||||||||| ||||    
T  41640054 aatagattaataatgtcttttcaaatgtaaat-aaatatgttatttgcaagaaactcattgtacatttaatttgtctatg 41640132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 19948765 - 19948915
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    ||||||||| |||| || |||||||| | ||||||||||||||||| |    ||||||||||||| | ||||||| |||| || ||||||| | || |||    
T  19948765 ttgacaataactatatagaaaagttg-gcaaaatgcatttcaagaagc----tttatccataattaatcgtttacaaaatggaataataatattttctcc 19948859  T
Q  101 aatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    ||||| |||||| ||| |||||||||||||| ||| ||| ||||||||  |||||||    
T  19948860 aatgt-aaacaactagattatttgcaagaaattcattgtccatttaataggtttatg 19948915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 22099013 - 22098943
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatat 222  Q
    ||||| |||||||||| ||||| || ||||||||| |||||| || ||| |||||||||||||||||||||    
T  22099013 tttatcttaattttcgacaactaaacttgtttggggtagctcaatattttttatttggggtagccgaatat 22098943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 281
Target Start/End: Complemental strand, 34033925 - 34033839
Alignment:
Q  195 atgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaatatattttttggggtagccaaggctacccct 281  Q
    |||||||||| |||||||||||  |||| |||  | ||| ||| ||| |||| |||||| |||||||||||||||||||||||||||    
T  34033925 atgtttattaattggggtagccagatatcaatacataccgactaattcaagaataatattttttttggggtagccaaggctacccct 34033839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 13517644 - 13517580
Alignment:
Q  92 gtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    |||||||| ||||||||  ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  13517644 gtcttttcaaatgtaaat-aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 13517580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 92 - 157
Target Start/End: Original strand, 17768976 - 17769040
Alignment:
Q  92 gtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    |||||||| ||||||||  ||||||||||||||||||||||||| ||| |||||||||||| ||||    
T  17768976 gtcttttcaaatgtaaat-aaataggttatttgcaagaaactcattgtacatttaatttgtctatg 17769040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 310
Target Start/End: Original strand, 3498684 - 3498842
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 251  Q
    ||||||||||||||   ||| | ||||| |||||| |||||  || ||| ||||||||||||||  ||||| ||   | |||||| |||| |||| ||||    
T  3498684 tttatgttaatttttaacaaataaatttatttggggtagctaaatattttttatttggggtagctaaatataaaaacataccaacatattcaagaataat 3498783  T
Q  252 atattttttggggtagccaaggctaccccttgtcaatgaagggatgcgcccctgcttgt 310  Q
    |  |||||||||||||||| ||||||| | ||  ||||||||||  |||||||| ||||    
T  3498784 actttttttggggtagccatggctacctcatgctaatgaagggaaccgcccctggttgt 3498842  T

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Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 14521753 - 14521651
Alignment:
Q  51 attttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaattt 150  Q
    |||||||||||||||||| ||||| |||||| |||| |||||| |||| |||||| ||||||| | |||||||||||  |||| | ||| | ||||||||    
T  14521753 attttatccataattgactgtttaataaatatattattaatgt-tttttcaatgt-aaacaaacaagttatttgcaa-caacttattgtacttttaattt 14521657  T
Q  151 gtttat 156  Q
    ||||||    
T  14521656 gtttat 14521651  T

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Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 42353304 - 42353223
Alignment:
Q  12 tatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgt 93  Q
    ||||||||||| ||| | |||| | |||| | |||  |||||||||||||||||||| ||||| ||||||||||| ||||||    
T  42353304 tatttaaaaaatttgggcaaaacgtattttatgaagtcaattttatccataattgactgtttaataaatagattattaatgt 42353223  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 7008811 - 7008761
Alignment:
Q  255 ttttttggggtagccaaggctaccccttgtcaatgaagggatgcgcccctg 305  Q
    ||||||| ||||||||||||||||||||  ||||||| |||| ||||||||    
T  7008811 ttttttgaggtagccaaggctaccccttcacaatgaaaggatacgcccctg 7008761  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 19949035 - 19949097
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtag 214  Q
    |||||||||||||||| ||||| || || ||||  ||||||| |||||||||||| |||||||    
T  19949035 tttatgttaattttcgacaactaaacttatttgaaatagctcaatgtttattattcggggtag 19949097  T

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Target: scaffold0795 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 436 - 605
Target Start/End: Complemental strand, 5190 - 5023
Alignment:
Q  436 acctctataaaatgtgactgaaaaatgttgaaacattgcgttcctcaccccttccacaccctcgatctgaacaccattaacattattagagataatcaca 535  Q
    |||||| ||||||| ||||||||  |||||||||| ||| |||||||||||||||| |||||| ||||||||||||||||||||| | |||||||||||     
T  5190 acctctttaaaatgagactgaaag-tgttgaaacactgcattcctcaccccttccaaaccctcaatctgaacaccattaacattaatcgagataatcacg 5092  T
Q  536 ttcgaccttctccgagaggacatcaccccatggaaaaaatttagaattgacatcaacttcctttaaccaa 605  Q
    ||| ||||||||| ||||||||||||||| |||  |||||||||||||| ||||| | ||||||| ||||    
T  5091 ttcaaccttctcctagaggacatcaccccgtgg-taaaatttagaattggcatcaccctcctttacccaa 5023  T

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Target: scaffold0186 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 22880 - 22726
Alignment:
Q  1 ttgacaatagctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttcc 100  Q
    ||||||||| ||||||| |||| |||   |||||| ||||||||||  ||||||||| |||||||||  |||||| ||||||||||||||||| ||||||    
T  22880 ttgacaataactatttagaaaatttggacaaaatg-atttcaagaagtcaattttattcataattgattgtttacaaaatagattaataatgttttttcc 22782  T
Q  101 aatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    ||||| ||||||||||||||||||||||||| ||||||  |||||||| ||||||||    
T  22781 aatgt-aaacaaataggttatttgcaagaaattcaatgcccatttaatatgtttatg 22726  T

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Target: scaffold0361 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 152 - 292
Target Start/End: Complemental strand, 7056 - 6917
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagccgaatattaatttacaccaacttattaaagattaat 251  Q
    |||||| ||||||||| ||||| |||||||||||| |||||| || |||||||||| || |||||| |||| |||||| |||||   ||| |||| ||||    
T  7056 tttatgctaattttcgacaactaaatttgtttggg-tagctcaatatttattatttaggttagccggatataaatttataccaaacaattgaagaataat 6958  T
Q  252 atattttttggggtagccaaggctaccccttgtcaatgaag 292  Q
    |||||||| |||||||||||||||||| ||| || ||||||    
T  6957 atatttttgggggtagccaaggctacctcttatctatgaag 6917  T

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Target: scaffold0005 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 11 - 157
Target Start/End: Original strand, 292188 - 292332
Alignment:
Q  11 ctatttaaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaac 110  Q
    ||||||| ||| |||| | ||||||  ||||||||| ||||||| ||| ||||||| | ||||| ||| |||||||||| ||||||||| ||| ||||      
T  292188 ctatttagaaacgttgggcaaaatgtgtttcaagaacccaatttcatcaataattgcctgtttaataa-tagattaatagtgtcttttcaaatataaat- 292285  T
Q  111 aaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    |||||||||||| |||||||||||| |||||||||||||||| ||||    
T  292286 aaataggttattcgcaagaaactcattgttcatttaatttgtctatg 292332  T

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Target: scaffold0002 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 61 - 156
Target Start/End: Original strand, 428333 - 428426
Alignment:
Q  61 taattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttat 156  Q
    |||||||| |||||||||||||||||||||||| ||||||||||| || ||||||| ||||||| |||||||| | ||| ||||||||||||||||    
T  428333 taattgactgtttactaaatagattaataatgtattttccaatgt-aagcaaatagattatttgtaagaaact-attgtccatttaatttgtttat 428426  T

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Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 428548 - 428611
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtagc 215  Q
    ||||| |||||||| | ||||||||||| ||| || |||||| |||||||||||||| ||||||    
T  428548 tttatattaatttttgacaactgaatttatttagggtagctcaatgtttattatttgaggtagc 428611  T

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Target: scaffold0481 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 6773 - 6701
Alignment:
Q  84 ttaataatgtcttttccaatgtaaaacaaataggttatttgcaagaaactcaatgttcatttaatttgtttatg 157  Q
    |||||||||||||||| ||||||||  ||||||||||||||||||||| ||| ||| |||||||||||| ||||    
T  6773 ttaataatgtcttttcaaatgtaaat-aaataggttatttgcaagaaattcattgtccatttaatttgtctatg 6701  T

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Target: scaffold1554 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1554
Description:

Target: scaffold1554; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 935 - 819
Alignment:
Q  17 aaaaaagttgtgtaaaatgcatttcaagaaaccaattttatccataattgaccgtttactaaatagattaataatgtcttttccaatgtaaaacaaatag 116  Q
    ||||| |||| | ||||||||||||||||| ||||||| ||| |||| || | ||||| | |||||||||||||| |||||||  |||| | | ||||||    
T  935 aaaaatgttgggcaaaatgcatttcaagaacccaatttcatcaataaatgtctgtttaat-aatagattaataatatcttttcagatgt-atataaatag 838  T
Q  117 gttatttgcaagaaactca 135  Q
    |||||||||| ||||||||    
T  837 gttatttgcatgaaactca 819  T

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Target: scaffold0110 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 7097 - 7159
Alignment:
Q  152 tttatgttaattttcggcaactgaatttgtttgggatagctccatgtttattatttggggtag 214  Q
    ||||| |||||||||| |||||||| ||||||||| || ||| ||||||||||||||||||||    
T  7097 tttatcttaattttcgacaactgaacttgtttggggtaactcaatgtttattatttggggtag 7159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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