View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11861_high_5 (Length: 644)
Name: NF11861_high_5
Description: NF11861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11861_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 337 - 629
Target Start/End: Complemental strand, 3910949 - 3910657
Alignment:
| Q |
337 |
ttcgaggtgggaaatcaaatcaattgttgtcaagaaataaagaaaatcaaatcaatgtgtttgaagaaaatgatagggagaataaaaccaattgaagaaa |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3910949 |
ttcgaggtgggaaatcaaatcaattgttgtcaagaaataaagaaaatcaaatcaatgtgtttgaagaaaatgatagggagaataaaaccaattgaagaaa |
3910850 |
T |
|
| Q |
437 |
atgagttaaggaaaatactaaaagacttaaacctagaaattaattaagatgacaacacaataaggaaatataccaaacctgttccctaagagagcatgaa |
536 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3910849 |
atgagttaaggaaaatactaaaagacttaaacctagaaattaattaagatgacaacacaataaggaaatataccaaacctgttccctaagagagcatgaa |
3910750 |
T |
|
| Q |
537 |
gttgaatgattttttgttcttcttgcaaactaaactttcctctcttaatatctggcctaagataattagtccatcttaatctgcagctcttac |
629 |
Q |
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| T |
3910749 |
gttgaatgatggtttgttcttcttgcaaactaaactttcctctcttaatatctggcctaagatagttagtccatcttaatctgcagctcttac |
3910657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 3911286 - 3910989
Alignment:
| Q |
1 |
aaatttaagaaaatgtcagagagcataacttgaattatttgttggggatgggttggaatagnnnnnnnnatttatttgattgaatgggtaggaatagtag |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
3911286 |
aaatttaagaaaatggcagagagcataacttgaattatttgttggggatgggttggaattgttttttttatttatttgattgaatgggtaggaatagtag |
3911187 |
T |
|
| Q |
101 |
aatggaaaaatttgaggggacattgcatttaagacatacctcacaacaagggaattggaagaaaaagaagaaattatagccccaacagaaaatgaatgat |
200 |
Q |
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| T |
3911186 |
aatggaaaaatttgaggggacattgcatttaagacatacctcacaacaagggaattggaagaaaaagaagaaattatagccccaacagaaaatgaatgat |
3911087 |
T |
|
| Q |
201 |
tatagtaagtgctgagtaagaatgggaacaaaaataaaaagttgagttgccacatatataaatataggcatctttaatttcaattttattttgcaata |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3911086 |
tatagtaagtgctgagtaagaatgggaacaaaaataaaaagttgagttgccacatatataaatataggcatctttaatttcaattttattttacaata |
3910989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 504 - 627
Target Start/End: Complemental strand, 2948954 - 2948831
Alignment:
| Q |
504 |
atataccaaacctgttccctaagagagcatgaagttgaatgattttttgttcttcttgcaaactaaactttcctctcttaatatctggcctaagataatt |
603 |
Q |
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|||| ||||||||||| ||||| | |||||||||||||| || ||||||||||||||| |||||||||||| ||||||||||| ||||| |||||||| |
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| T |
2948954 |
atatgccaaacctgttgcctaaaaatgcatgaagttgaataatggtttgttcttcttgcacactaaactttcccctcttaatatccggccttagataatt |
2948855 |
T |
|
| Q |
604 |
agtccatcttaatctgcagctctt |
627 |
Q |
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||||||||||| |||||||||||| |
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| T |
2948854 |
agtccatcttagtctgcagctctt |
2948831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 530 - 627
Target Start/End: Complemental strand, 32000012 - 31999915
Alignment:
| Q |
530 |
gcatgaagttgaatgattttttgttcttcttgcaaactaaactttcctctcttaatatctggcctaagataattagtccatcttaatctgcagctctt |
627 |
Q |
| |
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|||||||||||||| || |||| ||||| |||||||||||||||||||| || || ||||| | ||| || ||||||||||||| |||||||||||| |
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| T |
32000012 |
gcatgaagttgaataatagtttgctcttcctgcaaactaaactttcctctttttatgtctggtcgaaggtagttagtccatcttagtctgcagctctt |
31999915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 530 - 627
Target Start/End: Complemental strand, 31939714 - 31939617
Alignment:
| Q |
530 |
gcatgaagttgaatgattttttgttcttcttgcaaactaaactttcctctcttaatatctggcctaagataattagtccatcttaatctgcagctctt |
627 |
Q |
| |
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|||||||||||||| || |||| ||||| |||||||||||||||||||| || || ||||| | || || ||||||||||||| |||||||||||| |
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| T |
31939714 |
gcatgaagttgaataatagtttgctcttcctgcaaactaaactttcctctttttatgtctggtcggaggtagttagtccatcttagtctgcagctctt |
31939617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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