View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11861_high_8 (Length: 625)
Name: NF11861_high_8
Description: NF11861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11861_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 608
Target Start/End: Complemental strand, 41488298 - 41487688
Alignment:
| Q |
1 |
caatgaaactcaacaaaggtgagagggtgagagatagtggcaaagaagcagagcacttactggaacaattaaaaacaccatcaaaccatctaaataacca |
100 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41488298 |
caatgaaactcaaaaaaggtgagagggtgagagatagtggcaaggaagcagagcacttactggaacaattaaaaataccatcaaaccatctaaataacca |
41488199 |
T |
|
| Q |
101 |
attgaagaggattgtgcattagtagcattacgagcaagaaagatgttatagcaggtcaattgaaaattgaaacggaggatatgaagctgaaaacacaaca |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41488198 |
attgaagaggattgtgcattagtagcattacgagcaagaaagatgttataggaggtcaattgaaaattgaaacggaagatatgaagctgaaaacacaaca |
41488099 |
T |
|
| Q |
201 |
cataaatagagagaaacatgtttgatatggc-aaccaagtagaaatagcgcattcgtgtgtagcacgaaaaaatcttgtcgtgttatttagcatttttct |
299 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
41488098 |
cataaatagagagaaacgtgtttgatatggcaaaccaagtagaaatagcgcattcgtgtgtagcacgaaaaaatcttgtcatgttacttagcatttttct |
41487999 |
T |
|
| Q |
300 |
attattaatgcatcgcctgcacacaagaagcgcatgacttgctaaaaccaacaaacaagaaaaggatagacgagcgccgcacccctacactcaacaaata |
399 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
41487998 |
attattaatgcatcgcctgcacacaagtagcgcatgacttgctaaaaccaacaaacaagaaaaggatagacgagcgccgcacccctacactcaacaaaca |
41487899 |
T |
|
| Q |
400 |
gcaccacagctggc-aaagacaaaaactgtgcctaaaatagaagcccagaacaagtctagacagtccaaagcgctaggcctaaactacacccagaaacaa |
498 |
Q |
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| T |
41487898 |
acaccacagctggcaaaagacaaaaactgtgcctaaaatagaagcccagaacaagtctagacagtccaaagcgctaggcctaaactacacccagaaacaa |
41487799 |
T |
|
| Q |
499 |
aactccaatgctacctgcacccccaaaacccagacagaaaactcacagcagtagcagaaaaaccagtgccctaaccaacag-nnnnnnncagacaccaac |
597 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41487798 |
aacttcaatgctacctgcacccccaaaacccagacagaaaacccacagcagtagcagaaaaaccagtgccctaaccaacagaaaaaaaacagacaccaac |
41487699 |
T |
|
| Q |
598 |
agccttgcagc |
608 |
Q |
| |
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||||||||||| |
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| T |
41487698 |
agccttgcagc |
41487688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 4118571 - 4118871
Alignment:
| Q |
1 |
caatgaaactcaacaaaggtgagagggtgagagatagtggcaaagaagcagagcact--tactggaacaattaaaaacaccatcaaaccatctaaataac |
98 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
4118571 |
caatgaaactcaaaaaaggtgagagggtgagagatagtggcaaggaagcagagcactgttactggaacaattaaaaataccatcaaaccatctaaataac |
4118670 |
T |
|
| Q |
99 |
caattgaagaggattgtgcattagtagcattacgagcaagaaagatgttatagcaggtcaattgaaaattgaaacggaggatatgaagctgaaaacacaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4118671 |
caattgaagaggattgtgcattagtagcattacgagcaagaaagatgttatagcaggtcaattgaaaattgaaacggaggatatgaagctgaaaacacaa |
4118770 |
T |
|
| Q |
199 |
cacataaatagagagaaacatgtttgatatggc-aaccaagtagaaatagcgcattcgtgtgtagcacgaaaaaatcttgtcgtgttatttagcattttt |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4118771 |
cacataaatagagagaaacatgtttgatatggcaaaccaagtagaaatagtgcattcgtgtgtagcacg-aaaaatcttgtcgtgttatttagcattttt |
4118869 |
T |
|
| Q |
298 |
ct |
299 |
Q |
| |
|
|| |
|
|
| T |
4118870 |
ct |
4118871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 31713256 - 31713541
Alignment:
| Q |
1 |
caatgaaactcaacaaaggtgagagggtgagagatagtggcaaagaagcagagcact--tactggaacaattaaaaacaccatcaaaccatctaaataac |
98 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||| | ||||||||||||||||||| |
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| T |
31713256 |
caatgaaactcaaaaaaggtgagagggtgagagatagtggcaaggaagcagagcagtgttactggaacaattaaaaatatcatcaaaccatctaaataat |
31713355 |
T |
|
| Q |
99 |
caattgaagaggattgtgcattagtagcattacgagcaagaaagatgttatagcaggtcaattgaaaattgaaacggaggatatgaagctgaaaacacaa |
198 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31713356 |
caattaaagaggattgtgcattagtagcattacgagcaagaaagatgttatagcaggtcaattgaaaattgaaacggaggatatgaagctgaaaatacaa |
31713455 |
T |
|
| Q |
199 |
cacataaatagagagaaacatgtttgatatggc-aaccaagtagaaatagcgcattcgtgtgtagcacgaaaaaatcttgtcgtgtt |
284 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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|
| T |
31713456 |
cacataaataaagagaaacgtgtttgatatggcaaaccaagtagaaatagtgcattcgtgtgtagcacg-aaaaatcttgtcgtgtt |
31713541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 50498315 - 50498016
Alignment:
| Q |
1 |
caatgaaactcaacaaaggtgagagggtgagagatagtggcaaagaagcagagcact--tactggaacaattaaaaacaccatcaaaccatctaaataac |
98 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
50498315 |
caatgaaactcaaaaaaggtgagagggtgagagatagtggcaaggaagcagagcactgttactggaacaattaaaaataccatcaaaccatctaaataat |
50498216 |
T |
|
| Q |
99 |
caattgaagaggattgtgcattagtagcattacgagcaagaaagatgttatagcaggtcaattgaaaattgaaacggaggatatgaagctgaaaacacaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50498215 |
caattgaagaggattgtgcattagtagcattacgagcaagaaagatgttatagcagatcaattgaaaattgaaacggaggatatgaagctgaaaacacaa |
50498116 |
T |
|
| Q |
199 |
cacataaatagagagaaacatgtttgatatggc-aaccaagtagaaatagcgcattcgtgtgtagcacgaaaaaatcttgtcgtgttatttagcattttt |
297 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||| |
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|
| T |
50498115 |
cacataaatagagagaaacgtgtttgatatgacaaaccaagtagaaatagcgcattcgtgtgtagcacg-aaaatttttgtcgtgttatttagcattttt |
50498017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 299
Target Start/End: Complemental strand, 8913496 - 8913357
Alignment:
| Q |
161 |
tgaaaattgaaacggaggatatgaagctgaaaacacaacacataaatagagagaaacatgtttgatatgg-caaccaagtagaaatagcgcattcgtgtg |
259 |
Q |
| |
|
||||||| ||| ||||||||||||| | ||||||||||| ||||||||||||||||||| |||| || | ||||||| | ||| | |||||| ||| |
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|
| T |
8913496 |
tgaaaatataaaaggaggatatgaagataaaaacacaacattgaaatagagagaaacatgttcgatagggtccaccaagtgaagataccacattcgcgtg |
8913397 |
T |
|
| Q |
260 |
tagcacgaaaaaatcttgtcgtgttatttagcatttttct |
299 |
Q |
| |
|
| || ||||| ||||||||| ||||||||||||||| |
|
|
| T |
8913396 |
tgtaacatgaaaatattgtcgtgtcatttagcatttttct |
8913357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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