View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11861_high_9 (Length: 571)
Name: NF11861_high_9
Description: NF11861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11861_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 66 - 560
Target Start/End: Original strand, 30057775 - 30058268
Alignment:
| Q |
66 |
cttaggacttatctatgaaagggtaactattgtgattcaaagttaatggatccattgcaagagaaaaaggagaagatgcaatcttttaaaggaagagcag |
165 |
Q |
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| T |
30057775 |
cttaggacttatttatgaaagggtaactattgtgattcaaagttaatggatccattgcaagagaaaaaggagaagatgcaatcttttaaaggaagagcaa |
30057874 |
T |
|
| Q |
166 |
aagagaatgaaaattgagttgagaggtaccaaaaatttatggaagatactaacctctaacattataacaaatcagtaacaagtatataattaagcattct |
265 |
Q |
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| T |
30057875 |
aagagaatgaaaattgagttgag--gtaccaaaaatttatggaagatactaacctctaacattataacaaatcagtaacaagtatataattaagcattct |
30057972 |
T |
|
| Q |
266 |
gatatttactttctaatactaatcaataaacctatctttatctccattgtaaagcttcattcttcaaatttctgattcattttcttttggaaatcatgca |
365 |
Q |
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| T |
30057973 |
gatatttactttctaatattaatcaataaacctatctttatctccattgtaaagcttcattcttcaaatttctgattcattttcttttggaaatcatgca |
30058072 |
T |
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| Q |
366 |
tatcctttac-nnnnnnnatctgttatcaaacatctgcgaggagattcacacgcataaacgtcctccatatcttctttttactagcttcatctgttttgt |
464 |
Q |
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| T |
30058073 |
tatcctttactttcttttatccgtcatcaaacatctgcgaggagattcacacgcataaacgtcctccatatcttctttttactagcttcatctgtattgt |
30058172 |
T |
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| Q |
465 |
cattctgttatgaaggtgttccattccaagttctttgaaacctgtatcgtctcgtcttgtggtatgtcattctctaataaagtccttgtgatgtcc |
560 |
Q |
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| T |
30058173 |
cattctgttatgaaggtgttccattccaagttctttgaaacctgtatcgtctcgtcttgtggtatgtcattctctaataaagtccttgtgaggtcc |
30058268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 390 - 560
Target Start/End: Original strand, 30060765 - 30060934
Alignment:
| Q |
390 |
atcaaacatctgcgaggagattcacacgcataaacgtcctccatatcttctttttactagcttcatctgt-tttgtcattctgttatgaaggtgttccat |
488 |
Q |
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||||||||||||| || || |||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
30060765 |
atcaaacatctgcaagtagcttcacacgcataaacgtcctccat--cttctttttactagcttcatatgtatttgtcattctgttatgaaggtgttccat |
30060862 |
T |
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| Q |
489 |
tccaagttctttgaaacctgtatcgtctcgtcttgtggtatgtcattctctaataaagtccttgtgatgtcc |
560 |
Q |
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| T |
30060863 |
tctgagttctttgaaacctgtatcgtctcgtcttgtggtatgtcattctctaataaagcccttgtgaggtcc |
30060934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 30056665 - 30056715
Alignment:
| Q |
18 |
ttttgttttatgagtggtccataagatgaagtgttctgctgaaaccttctt |
68 |
Q |
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| T |
30056665 |
ttttgttttatgagtggtccataagatgaagtgttctgctgataccttctt |
30056715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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