View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11861_low_11 (Length: 439)

Name: NF11861_low_11
Description: NF11861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11861_low_11
NF11861_low_11
[»] chr3 (5 HSPs)
chr3 (1-432)||(47193271-47193702)
chr3 (105-397)||(9792406-9792698)
chr3 (65-132)||(47212255-47212322)
chr3 (2-288)||(26737017-26737303)
chr3 (83-288)||(26713862-26714067)
[»] chr7 (9 HSPs)
chr7 (99-269)||(6609317-6609487)
chr7 (99-269)||(6624634-6624804)
chr7 (65-351)||(18658605-18658897)
chr7 (62-288)||(21130440-21130672)
chr7 (62-288)||(21111480-21111712)
chr7 (65-132)||(29213017-29213084)
chr7 (62-116)||(21098712-21098766)
chr7 (62-176)||(21123312-21123426)
chr7 (280-321)||(6609483-6609524)
[»] chr4 (2 HSPs)
chr4 (218-282)||(39132070-39132134)
chr4 (62-123)||(39132235-39132296)
[»] chr1 (1 HSPs)
chr1 (79-116)||(11791111-11791148)


Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Complemental strand, 47193702 - 47193271
Alignment:
Q  1 attcaatagttttgataaaccaaaatcagcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcacaatgtaaaacccattcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193702 attcaatagttttgataaaccaaaatcagcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcacaatgtaaaacccattcc 47193603  T
Q  101 aaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193602 aaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgcta 47193503  T
Q  201 aagaaccatgttctatatactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcatatggttcaacataccaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193502 aagaaccatgttctatatactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcatatggttcaacataccaat 47193403  T
Q  301 tgtgcttatttcagctagaaattcagcttctccctgatgagcttcatttaagcatttaacagcagcaacacgatcatcatcgagtgtacctttgtaaaca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47193402 tgtgcttatttcagctagaaattcagcttctccctgatgagcttcatttaagcatttaacagcagcaacacgatcatcatcgagtgtacctttgtaaaca 47193303  T
Q  401 atccctcctcctcctcgaccgatctctctgct 432  Q
    ||||||||||||||||||||||||||| ||||    
T  47193302 atccctcctcctcctcgaccgatctctttgct 47193271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 105 - 397
Target Start/End: Complemental strand, 9792698 - 9792406
Alignment:
Q  105 actcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaaaga 204  Q
    |||||||| |||||||||| |||||||||| |||| ||||| |||  ||||| |||||||||||||||| |||||||||||||||||||||  |||| ||    
T  9792698 actcttcaagtaaataagcgaaacctttagttgttgcaacaactatcttaaatctcttattccaatcaactgaattagaacatagattctcaactaatga 9792599  T
Q  205 accatgttctatatactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcatatggttcaacataccaattgtg 304  Q
    ||||||||| ||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||     
T  9792598 accatgttccatatactcataaaccaaaagtctatttttcccttcaacacaatatccccacatatcaattaaatttttatggttcaacataccaattgta 9792499  T
Q  305 cttatttcagctagaaattcagcttctccctgatgagcttcatttaagcatttaacagcagcaacacgatcatcatcgagtgtacctttgtaa 397  Q
    ||||||| ||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||| ||| | ||||||| ||||||||    
T  9792498 cttatttaagctagaaatttagcttcttcttgatgagcttcatttaagcatttaacagcagcaacacgataatcgttgagtgtaactttgtaa 9792406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 47212255 - 47212322
Alignment:
Q  65 ttttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaaccttt 132  Q
    ||||| || |||||||||||||| |||| ||| ||||||||||||||||| | |||||||||||||||    
T  47212255 ttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcatggatataagccaaaccttt 47212322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 288
Target Start/End: Original strand, 26737017 - 26737303
Alignment:
Q  2 ttcaatagttttgataaaccaaaatcagcaacctttggttgaaaatttgtgtcaagtaaaatattttgaggtttcacatcacaatgtaaaacccattcca 101  Q
    |||||||| || || ||||||||||| |||||||| ||| || |||  | |||||  |  || ||||| || || | ||| ||||| |||| ||| ||||    
T  26737017 ttcaatagcttagacaaaccaaaatctgcaaccttaggtcgataatcagagtcaacaagtatgttttgcggctttatatcgcaatgcaaaatccactcca 26737116  T
Q  102 aacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgctaa 201  Q
    |||||||||||||||||||||| | || ||| || ||||| | ||| | |  | | |||||   ||||||||||  ||| ||  | ||||| || |||||    
T  26737117 aacactcttcatgtaaataagcaagacattttgcagttcctatagcaataccatatctctttccccaatcaagttcatttgatgagagattatcagctaa 26737216  T
Q  202 agaaccatgttctatatactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcatatggtt 288  Q
    || ||||| ||| || |||||||| ||||| |   ||||||| || ||| ||||||| ||||||||  ||||||||||||| |||||    
T  26737217 agtaccattttccatgtactcataaaccaacaatttatgttttccctcagcacaataaccccacattccaattaaattcatgtggtt 26737303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 288
Target Start/End: Original strand, 26713862 - 26714067
Alignment:
Q  83 caatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattag 182  Q
    ||||| |||| ||| |||||||||||||||||||||||||| | || ||| || ||||| | ||| | |  | | |||||   ||||||||||  ||| |    
T  26713862 caatgcaaaatccactccaaacactcttcatgtaaataagcaagacattttgcagttcctatagcaataccatatctctttccccaatcaagttcatttg 26713961  T
Q  183 aacatagattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcat 282  Q
    |  | ||||| || ||||||| ||||| ||| || |||||||| ||||| |   ||||||| || ||| ||||||| ||||||||  |||| ||||||||    
T  26713962 ataagagattatcagctaaagtaccattttccatgtactcataaaccaacaatttatgttttccctcagcacaataaccccacattccaatcaaattcat 26714061  T
Q  283 atggtt 288  Q
     |||||    
T  26714062 gtggtt 26714067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 5e-63; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 99 - 269
Target Start/End: Original strand, 6609317 - 6609487
Alignment:
Q  99 ccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgc 198  Q
    |||||||||||||||||| |||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||  |    
T  6609317 ccaaacactcttcatgtacataaaccaaacctttagctgttgcaacaactacattaaatctcttattccaatcaagtgaattagaacatagattctcaac 6609416  T
Q  199 taaagaaccatgttctatatactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatat 269  Q
    ||| ||||||||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||    
T  6609417 taatgaaccatgttccatatactcataaaccagaagcctatgtttcccctcaacacaatatccccacatat 6609487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 99 - 269
Target Start/End: Complemental strand, 6624804 - 6624634
Alignment:
Q  99 ccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttattccaatcaagtgaattagaacatagattctccgc 198  Q
    |||||||||||||||||| |||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||  |    
T  6624804 ccaaacactcttcatgtacataaaccaaacctttagctgttgcaacaactacattaaatctcttattccaatcaagtgaattagaacatagattctcaac 6624705  T
Q  199 taaagaaccatgttctatatactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatat 269  Q
    ||| |||||||||||  |||||||||| |||| ||||||||||||||| ||||||||||||||||||||||    
T  6624704 taatgaaccatgttccgtatactcataaaccagaagcctatgtttcccctcaacacaatatccccacatat 6624634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 65 - 351
Target Start/End: Original strand, 18658605 - 18658897
Alignment:
Q  65 ttttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctcttat 164  Q
    |||||||| || | ||||||||| |||| |||||||||||| |||||||||| |||||| | | ||||||||||||| | ||| | || | |||| |||     
T  18658605 ttttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagataagctagaactttagctgttcctaaagcaatatcataccttttac 18658704  T
Q  165 tccaatcaagtgaattag------aacatagattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgtttcccttcaacacaata 258  Q
    |||| |||||||  ||||      |  | ||||| || |||||||| |||| ||| || |||||||| |||||||| ||||| || |||||| |||||||    
T  18658705 tccagtcaagtgtgttagttttagatgaaagattttcagctaaagatccattttccatgtactcatataccaaaagtctatgcttaccttcagcacaata 18658804  T
Q  259 tccccacatatcaattaaattcatatggttcaacataccaattgtgcttatttcagctagaaattcagcttctccctgatgagcttcatttaa 351  Q
    ||||||||||||||| || ||||| ||||| | |   |||||  |||||| |||||| ||||||||  ||||||| || | ||||||||||||    
T  18658805 tccccacatatcaatcaagttcatgtggttaagccgtccaatgatgcttacttcagcaagaaattctccttctccttgtttagcttcatttaa 18658897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 62 - 288
Target Start/End: Original strand, 21130440 - 21130672
Alignment:
Q  62 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctct 161  Q
    ||||||||||| || | ||||||||| |||| |||||||||||| |||||||||| ||| || ||| || |||||||||| | ||| | || | |||| |    
T  21130440 atattttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagatatgctaaaactctagctgttcctaaagcaatatcataccttt 21130539  T
Q  162 tattccaatcaagtgaattag------aacatagattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgtttcccttcaacaca 255  Q
    || ||||||||||||  || |      |  | ||||| |||||||||||||||| ||| || |||||||| |||||||  ||||| || |||||||||||    
T  21130540 tagtccaatcaagtgtgttggttttggatgaaagattttccgctaaagaaccattttccatgtactcatataccaaaattctatgcttaccttcaacaca 21130639  T
Q  256 atatccccacatatcaattaaattcatatggtt 288  Q
    |||||||||||| ||||| |||||||| |||||    
T  21130640 atatccccacatttcaatcaaattcatgtggtt 21130672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 62 - 288
Target Start/End: Original strand, 21111480 - 21111712
Alignment:
Q  62 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctct 161  Q
    ||||||||||| || | ||||||||| || | |||||| | ||| |||||||||| |||||| | | || |||||||||| | ||| | || | |||| |    
T  21111480 atattttgaggctttatatcacaatgcaatatccattcgagacattcttcatgtagataagcaagaactctagctgttcctaaagcaatatcataccttt 21111579  T
Q  162 tattccaatcaagtgaattag------aacatagattctccgctaaagaaccatgttctatatactcatagaccaaaagcctatgtttcccttcaacaca 255  Q
    || ||||||||||||  ||||      |  | ||||| || |||||||| |||| ||| || |||||||| |||||||| ||||| || |||||| ||||    
T  21111580 tactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatccattttccatgtactcatataccaaaagtctatgcttaccttcagcaca 21111679  T
Q  256 atatccccacatatcaattaaattcatatggtt 288  Q
    |||||||||||| || || || ||||| |||||    
T  21111680 atatccccacatttctatcaagttcatgtggtt 21111712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 29213017 - 29213084
Alignment:
Q  65 ttttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaaccttt 132  Q
    ||||| || |||||||||||||| |||| ||| ||||||||||||||||  | |||||||||||||||    
T  29213017 ttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcataaatataagccaaaccttt 29213084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 21098766 - 21098712
Alignment:
Q  62 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgta 116  Q
    |||||||| || || | |||||||||||||| |||||||||||| ||||||||||    
T  21098766 atattttgcggctttatatcacaatgtaaaatccattccaaacattcttcatgta 21098712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 176
Target Start/End: Original strand, 21123312 - 21123426
Alignment:
Q  62 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaacctttagctgttccaacagctacattaaacctct 161  Q
    ||||||||||| || | ||||||||| |||| ||| |||| ||| |||||||||| |||||| | | || |||||||||| | ||| | || | |||| |    
T  21123312 atattttgaggctttatatcacaatgcaaaatccactccatacattcttcatgtagataagcaagaactctagctgttcctaaagcaatatcataccttt 21123411  T
Q  162 tattccaatcaagtg 176  Q
    || ||||||||||||    
T  21123412 tactccaatcaagtg 21123426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 321
Target Start/End: Original strand, 6609483 - 6609524
Alignment:
Q  280 catatggttcaacataccaattgtgcttatttcagctagaaa 321  Q
    ||||||||| |||||||||||| ||||||||| |||||||||    
T  6609483 catatggtttaacataccaattttgcttatttaagctagaaa 6609524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 282
Target Start/End: Complemental strand, 39132134 - 39132070
Alignment:
Q  218 tactcatagaccaaaagcctatgtttcccttcaacacaatatccccacatatcaattaaattcat 282  Q
    |||||||| |||||||  ||||| || ||||||||||||||||||||||| |||||||| |||||    
T  39132134 tactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaattaagttcat 39132070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 39132296 - 39132235
Alignment:
Q  62 atattttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagc 123  Q
    ||||||||||| || | |||||||||||||| ||| |||||||| |||||||||| ||||||    
T  39132296 atattttgaggctttatatcacaatgtaaaatccactccaaacattcttcatgtagataagc 39132235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 11791111 - 11791148
Alignment:
Q  79 atcacaatgtaaaacccattccaaacactcttcatgta 116  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  11791111 atcacaatgcaaaacccattccaaacactcctcatgta 11791148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University