View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11861_low_13 (Length: 385)
Name: NF11861_low_13
Description: NF11861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11861_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 31012221 - 31011840
Alignment:
| Q |
1 |
aggtagtgcttagatgcaaatttcagttcattatgtttgagttgagttatactgctcatggtaagcaaaaatgattctcatgcccatagagtcaactcaa |
100 |
Q |
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| T |
31012221 |
aggtagtgcttagatgcaaatttcagttcattatgtttgagttgagttatactgctcatggtaagcaaaaatgattctcatgcccatagagtcaactcaa |
31012122 |
T |
|
| Q |
101 |
tagtcacccacgaaatttccactctctttccttgttgtttcttttattcnnnnnnnaattaaattttaaattaagatacgtcgtattcaaggtgaagtta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31012121 |
tagtcacccacgaaatttccactctctttccttgttgtttcttttattctttttttaattaaattttaaattaagatacgtcgtattcaaggtgaagtta |
31012022 |
T |
|
| Q |
201 |
tccacaacttaccggatttacaatagaatttatgcattgtttatcaacgagaaattttggacttctatataaattta------------ctagaatgttc |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| |
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| T |
31012021 |
tccacaacttaccggatttacaatagaatttatgcattgtttatcaacgagaaattttggacttctatctaagtttactataagtatagctagaatgttc |
31011922 |
T |
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| Q |
289 |
aatcaaatgtgtttcttcaagttggttctatcctctttctttctccaagaatgattaatttcaccgtctactaccaaaaatc |
370 |
Q |
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| T |
31011921 |
aatcaaatgtgtttcttcaagttggttctatcctctttctttctccaagaatgattaatttcaccgtctactaccaaaaatc |
31011840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 30984868 - 30984760
Alignment:
| Q |
25 |
agttcattatgtttgagttgagttatactgctcatggtaagcaaaaatgattctcatgcccatagagtcaactcaatagtcacccacgaaatttccactc |
124 |
Q |
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| T |
30984868 |
agttcataatgtttgagttgagttatggttctcatgttcagcaaaaatgattttcatgcccatagagtcaactcaaaagtcacccacgaaatttccactc |
30984769 |
T |
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| Q |
125 |
tctttcctt |
133 |
Q |
| |
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||||||||| |
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| T |
30984768 |
tctttcctt |
30984760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 30991032 - 30990924
Alignment:
| Q |
25 |
agttcattatgtttgagttgagttatactgctcatggtaagcaaaaatgattctcatgcccatagagtcaactcaatagtcacccacgaaatttccactc |
124 |
Q |
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||||||| |||||||||||||||||| | |||||| | ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30991032 |
agttcataatgtttgagttgagttatggttctcatgttcagcaaaaatgattttcatgcccatagagtcaactcaaaagtcacccacgaaatttccactc |
30990933 |
T |
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| Q |
125 |
tctttcctt |
133 |
Q |
| |
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||||||||| |
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| T |
30990932 |
tctttcctt |
30990924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 135
Target Start/End: Complemental strand, 31001670 - 31001554
Alignment:
| Q |
16 |
gcaaatttcagttcattatgtttgagttgagttatactgctcatggtaagcaaaaatgattctcatgcccatagagtcaactcaatagtcacccacgaaa |
115 |
Q |
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||||| |||||||||| ||||||||||||||||||||| |||| | | |||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
31001670 |
gcaaaattcagttcataatgtttgagttgagttatact---catgcttataaaaaatgattctcatggacatagagtcaactcaaaagtcacccacgaaa |
31001574 |
T |
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| Q |
116 |
tttccactctctttccttgt |
135 |
Q |
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|||||||||| ||||||||| |
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| T |
31001573 |
tttccactctatttccttgt |
31001554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 30958375 - 30958316
Alignment:
| Q |
65 |
gcaaaaatgattctcatgcccatagagtcaactcaatagtcacccacgaaatttccactct |
125 |
Q |
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|||||||||||||||||| |||| ||||||||||| |||||||||| ||||||||||||| |
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| T |
30958375 |
gcaaaaatgattctcatggtcataaagtcaactcaa-agtcacccactaaatttccactct |
30958316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 145
Target Start/End: Complemental strand, 15492816 - 15492784
Alignment:
| Q |
113 |
aaatttccactctctttccttgttgtttctttt |
145 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
15492816 |
aaatttccactctctttccttgtcgtttctttt |
15492784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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