View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11861_low_14 (Length: 374)
Name: NF11861_low_14
Description: NF11861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11861_low_14 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 374
Target Start/End: Complemental strand, 24590448 - 24590103
Alignment:
| Q |
14 |
atgtctttgattgtgatttagtcccacttcaatgggtttgtttaagagagttgaatcatgatccaatgattttgccaatttgatgttttggtttnnnnnn |
113 |
Q |
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| T |
24590448 |
atgtctttgattgtgatttagtcccacttcaatgggtttgtttaagagagttgaatcatgatccaatgattttgccaattcgatgttt-ggtttaaaaaa |
24590350 |
T |
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| Q |
114 |
nnntttggcgttaatcctctggttttcaaggaaaatgggtcctattaatccagagttcgcccgtgagataaagagttcgtccgtaagataaagatggtct |
213 |
Q |
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| T |
24590349 |
aaatt-ggcgttaatcctctggttttcaaggaaaatgggtcctattaatcccgatttcgcccgtgagataaagagttcgtccgtgagataaagacggtct |
24590251 |
T |
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| Q |
214 |
agcaaaaaattgtttcacccataaatcgaactagaattcaaccaaaatgtttggttcaatttttgaaacatcatgcataatttgtaaatgtgtagcttta |
313 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
24590250 |
agcaaaaaattgtttcacccataaatcgaactagagttcaaccaaaa-------------ttttgaaacatcatgcataatttgaaaatgtgtagcttta |
24590164 |
T |
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| Q |
314 |
aatttaagcatttaaggatacactattgtttgataatctatatgtaagtactaatctcttc |
374 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24590163 |
aatttcagcatttaaggatacactattgtttgataatctatatgtaagtactaatctcttc |
24590103 |
T |
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