View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11861_low_16 (Length: 362)
Name: NF11861_low_16
Description: NF11861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11861_low_16 |
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| [»] scaffold1557 (2 HSPs) |
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Alignment Details
Target: scaffold1557 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: scaffold1557
Description:
Target: scaffold1557; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 129 - 228
Target Start/End: Complemental strand, 463 - 364
Alignment:
| Q |
129 |
aagagaattgctaccaacaaacgctctgacactctcttcttaacacacgcgcatgtattggaccacgtatctgctctatttttggctaccgggaattcaa |
228 |
Q |
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| T |
463 |
aagagaattgataccaacaaacgctctgacactctcttcttaacacacgcgcatgtattggaccacgtatctgctctatttttggctaccgggaattcaa |
364 |
T |
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Target: scaffold1557; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 270 - 344
Target Start/End: Complemental strand, 322 - 248
Alignment:
| Q |
270 |
tctcaccaaaacaaaactgagatctgaaatgtcttcaccaccatcatctctccctgtcaaaaatcatatcaccat |
344 |
Q |
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| T |
322 |
tctcaccaaaacaaaactgagatctgaaatgtcttcaccaccatcatctctccctatcaaaaatcatatcaccat |
248 |
T |
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