View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11861_low_18 (Length: 283)
Name: NF11861_low_18
Description: NF11861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11861_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 47193961 - 47193703
Alignment:
| Q |
18 |
aaaacatagtcgtaggtgcacttttcaccttttccatcacccaactcaccattcgatgatgatgctccaaacctccactattatcaacaacactatgaat |
117 |
Q |
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| T |
47193961 |
aaaacatagtcgtaggtgcacttttcaccttttccatcacccaactcaccattcgatgatgatgctccaaacctccactattatcaacaacactatgaat |
47193862 |
T |
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| Q |
118 |
ttccattggactttttccactcaccatttcaagcaaaacaatcccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggt |
217 |
Q |
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| T |
47193861 |
ttccattggactttttccactcaccatttcaagcaaaacaatcccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggt |
47193762 |
T |
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| Q |
218 |
gccatataacctcttgtccctcttattcttgaaaaagcagaactatcacgttcatctct |
276 |
Q |
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| T |
47193761 |
gccatataacctcttgtccctcttattcttgaaaaagcagaactatcacgttcatctct |
47193703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 239
Target Start/End: Original strand, 26698512 - 26698590
Alignment:
| Q |
161 |
ccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtccctc |
239 |
Q |
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| T |
26698512 |
ccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaacctcttgtccctc |
26698590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 239
Target Start/End: Original strand, 26733675 - 26733753
Alignment:
| Q |
161 |
ccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtccctc |
239 |
Q |
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| T |
26733675 |
ccatagctataaacatccacttttgaagtaatttgcatgttgaaaacccattcaggtgccatgtaacctcttgtccctc |
26733753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 239
Target Start/End: Original strand, 26750879 - 26750914
Alignment:
| Q |
204 |
aaacccattcaggtgccatataacctcttgtccctc |
239 |
Q |
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| T |
26750879 |
aaacccattcaggtgccatgtaacctcttgtccctc |
26750914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 39132486 - 39132397
Alignment:
| Q |
151 |
caaaacaatcccataactataaacatcaacttttgaagtaatacgaagattataaacccattcaggtgccatataacctcttgtccctct |
240 |
Q |
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| T |
39132486 |
caaaacaatcccataactataaacatccactttagatgttattggtaaattgaaaacccattcaggagccatatatcctcttgttcctct |
39132397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 23466619 - 23466655
Alignment:
| Q |
208 |
ccattcaggtgccatataacctcttgtccctcttatt |
244 |
Q |
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| T |
23466619 |
ccattctggtgccatataacctcttgttcctcttatt |
23466655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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