View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11861_low_19 (Length: 272)

Name: NF11861_low_19
Description: NF11861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11861_low_19
NF11861_low_19
[»] chr6 (2 HSPs)
chr6 (17-265)||(5542400-5542648)
chr6 (39-124)||(14680336-14680421)
[»] chr1 (6 HSPs)
chr1 (17-124)||(5609513-5609620)
chr1 (24-76)||(4395380-4395432)
chr1 (40-139)||(51113474-51113573)
chr1 (39-92)||(23163357-23163410)
chr1 (39-124)||(44602926-44603011)
chr1 (40-124)||(48949653-48949737)
[»] chr3 (7 HSPs)
chr3 (25-126)||(49525108-49525209)
chr3 (17-74)||(26046912-26046969)
chr3 (40-124)||(27608832-27608916)
chr3 (39-78)||(2121301-2121340)
chr3 (42-124)||(42340208-42340290)
chr3 (24-76)||(34497285-34497337)
chr3 (40-76)||(55199733-55199769)
[»] scaffold0446 (1 HSPs)
scaffold0446 (24-124)||(364-464)
[»] chr4 (12 HSPs)
chr4 (24-124)||(56065807-56065907)
chr4 (19-136)||(51259437-51259554)
chr4 (24-124)||(49951487-49951587)
chr4 (24-124)||(51734885-51734985)
chr4 (26-133)||(29655581-29655688)
chr4 (25-124)||(37245766-37245865)
chr4 (39-76)||(28426405-28426442)
chr4 (39-76)||(32576976-32577013)
chr4 (24-139)||(33582849-33582961)
chr4 (40-133)||(44936011-44936104)
chr4 (39-76)||(49119328-49119365)
chr4 (40-124)||(41835240-41835324)
[»] chr8 (5 HSPs)
chr8 (25-76)||(13415245-13415296)
chr8 (26-124)||(477971-478069)
chr8 (24-109)||(8670227-8670312)
chr8 (25-133)||(7127388-7127496)
chr8 (39-76)||(11870486-11870523)
[»] chr7 (11 HSPs)
chr7 (25-124)||(16732107-16732206)
chr7 (25-124)||(17710241-17710340)
chr7 (39-124)||(9328530-9328615)
chr7 (17-109)||(6056283-6056375)
chr7 (24-76)||(24139233-24139285)
chr7 (24-76)||(24251661-24251713)
chr7 (24-76)||(44481309-44481361)
chr7 (17-76)||(28598136-28598195)
chr7 (25-124)||(29200869-29200968)
chr7 (39-133)||(30824422-30824516)
chr7 (24-124)||(22289415-22289515)
[»] chr2 (4 HSPs)
chr2 (39-124)||(9710129-9710214)
chr2 (24-76)||(34695817-34695869)
chr2 (24-76)||(34718229-34718281)
chr2 (24-104)||(88753-88833)
[»] chr5 (6 HSPs)
chr5 (40-136)||(26597386-26597482)
chr5 (17-76)||(20205177-20205236)
chr5 (39-124)||(31908324-31908409)
chr5 (40-76)||(8388308-8388344)
chr5 (40-76)||(23075054-23075090)
chr5 (24-76)||(25731030-25731082)
[»] scaffold0252 (1 HSPs)
scaffold0252 (24-126)||(13293-13393)


Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 5542648 - 5542400
Alignment:
Q  17 agaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5542648 agaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataata 5542549  T
Q  117 ttagaaactatgacataaaactcagaagctccaaatctgtgggaagaaatacagtccactagagtatgggaatccgtctcaaaaaatcatctttctccac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5542548 ttagaaactatgacataaaactcagaagctccaaatctgtgggaagaaatacagtccactagagtatgggaatccgtctcaaaaaatcatctttctccac 5542449  T
Q  217 ccttgatgcatatccaaccaaccgaattgcttccatgaacgcctatgct 265  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||    
T  5542448 ccttgatgcatatccaaccaaccgaattgcttccatgaacaccaatgct 5542400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 14680421 - 14680336
Alignment:
Q  39 gtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 124  Q
    |||||||||||||||||||| |||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |||||||    
T  14680421 gtatgagcaaccatgttcgcatgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaac 14680336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 5609620 - 5609513
Alignment:
Q  17 agaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataata 116  Q
    |||| ||||||||||||| | |||||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | ||||||||    
T  5609620 agaacatgccgccctagctaatgtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataata 5609521  T
Q  117 ttagaaac 124  Q
     |||||||    
T  5609520 ctagaaac 5609513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 4395432 - 4395380
Alignment:
Q  24 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 76  Q
    ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  4395432 gccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 4395380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 139
Target Start/End: Complemental strand, 51113573 - 51113474
Alignment:
Q  40 tatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacataaaactc 139  Q
    ||||||||||||||||||||| || |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| ||||||| ||  ||||||||||    
T  51113573 tatgagcaaccatgttcgcttctctcctaacaaacttcacctcgaagttggaatgttaagataactgaaaaataatactagaaacaatagcataaaactc 51113474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 23163410 - 23163357
Alignment:
Q  39 gtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaa 92  Q
    |||||||||||||||||||||||||  ||| |||||||||| || |||| ||||    
T  23163410 gtatgagcaaccatgttcgcttgtcttctaacaaactttatctcgaagttggaa 23163357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 44603011 - 44602926
Alignment:
Q  39 gtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 124  Q
    |||||||| |||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |||||||    
T  44603011 gtatgagccaccatgttcgcttgtcccctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaac 44602926  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 48949653 - 48949737
Alignment:
Q  40 tatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 124  Q
    |||||| ||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |||||||    
T  48949653 tatgagtaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgaaaaataatactagaaac 48949737  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 126
Target Start/End: Original strand, 49525108 - 49525209
Alignment:
Q  25 ccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 124  Q
    ||||||||||||| || |||||| |||||||||||||||||||| |||||||||  ||||| | ||||||| || |||| |||||  |||||  ||||||    
T  49525108 ccgccctagcaagggtgtgagcagccatgttcgcttgtcgcctaacaaactttacctcaaaattggaatgtaaaactaaaatagacttaataaaagaaac 49525207  T
Q  125 ta 126  Q
    ||    
T  49525208 ta 49525209  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 26046969 - 26046912
Alignment:
Q  17 agaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaac 74  Q
    |||||| ||||||||||| |  ||||||||||||||||||||||||| |||| |||||    
T  26046969 agaataagccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaac 26046912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 27608832 - 27608916
Alignment:
Q  40 tatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 124  Q
    |||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |||||||    
T  27608832 tatgagcaaccatgttcgcttgtctcctaacaaacttcagctcgaagttggaatgtaaagataactgaaaaataatactagaaac 27608916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 78
Target Start/End: Complemental strand, 2121340 - 2121301
Alignment:
Q  39 gtatgagcaaccatgttcgcttgtcgcctagcaaacttta 78  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  2121340 gtatgagcaaccatgttcgcttgtctcctaacaaacttta 2121301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 42340208 - 42340290
Alignment:
Q  42 tgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 124  Q
    |||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| || |  | ||||||||||||||||    
T  42340208 tgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagatagctgataaataatattagaaac 42340290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 34497285 - 34497337
Alignment:
Q  24 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 76  Q
    ||||||||||| |   |||||||||||||||||||||||| |||| |||||||    
T  34497285 gccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaactt 34497337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 55199769 - 55199733
Alignment:
Q  40 tatgagcaaccatgttcgcttgtcgcctagcaaactt 76  Q
    |||||||||||||||||||||||| |||| |||||||    
T  55199769 tatgagcaaccatgttcgcttgtctcctaacaaactt 55199733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 464 - 364
Alignment:
Q  24 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaa 123  Q
    ||||||||||| |   |||||||||||||||||||||||| |||| ||||||| || || |||| ||||||| ||| ||||  | |||||||||||||||    
T  464 gccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcatctcgaagttggaatgtaaagataactgaaaaataatattagaaa 365  T
Q  124 c 124  Q
    |    
T  364 c 364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 56065907 - 56065807
Alignment:
Q  24 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaa 123  Q
    ||||||||||| |   |||||||||||||||||||||||| |||| ||||||| || || |||| ||||||| ||| ||||  | |||||||||||||||    
T  56065907 gccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcatctcgaagttggaatgtaaagataactgaaaaataatattagaaa 56065808  T
Q  124 c 124  Q
    |    
T  56065807 c 56065807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 51259437 - 51259554
Alignment:
Q  19 aatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatatt 118  Q
    |||| ||||||||||| |   |||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |    
T  51259437 aataggccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgaaaaataatact 51259536  T
Q  119 agaaactatgacataaaa 136  Q
    |||||| || ||||||||    
T  51259537 agaaacaataacataaaa 51259554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 49951587 - 49951487
Alignment:
Q  24 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaa 123  Q
    ||||||||||| |  ||||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| ||||||    
T  49951587 gccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaa 49951488  T
Q  124 c 124  Q
    |    
T  49951487 c 49951487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 124
Target Start/End: Original strand, 51734885 - 51734985
Alignment:
Q  24 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaa 123  Q
    ||||||||||| |  |||||||||||||||||| |||||| |||| ||||||| |  || |||| ||||||| ||| ||||| | |||||||| ||||||    
T  51734885 gccgccctagctaaagtatgagcaaccatgttcacttgtcacctaacaaacttcacctcgaagttggaatgtaaagataacagataaataatactagaaa 51734984  T
Q  124 c 124  Q
    |    
T  51734985 c 51734985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 133
Target Start/End: Original strand, 29655581 - 29655688
Alignment:
Q  26 cgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaact 125  Q
    ||||||||| |  ||||||||||||||||||||||||| |||| ||||||| || || |||| | ||||| ||| || |  | |||||||| |||||||     
T  29655581 cgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcatctcgaagtggaaatgtaaagatagctgataaataatactagaaaca 29655680  T
Q  126 atgacata 133  Q
    || |||||    
T  29655681 ataacata 29655688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 37245766 - 37245865
Alignment:
Q  25 ccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 124  Q
    |||||||||| |  ||||||||||||||||||| ||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |||||||    
T  37245766 ccgccctagctaaagtatgagcaaccatgttcgattgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaac 37245865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 28426442 - 28426405
Alignment:
Q  39 gtatgagcaaccatgttcgcttgtcgcctagcaaactt 76  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  28426442 gtatgagcaaccatgttcgcttgtctcctaacaaactt 28426405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 32576976 - 32577013
Alignment:
Q  39 gtatgagcaaccatgttcgcttgtcgcctagcaaactt 76  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  32576976 gtatgagcaaccatgttcgcttgtctcctaacaaactt 32577013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 33582961 - 33582849
Alignment:
Q  24 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaa 123  Q
    |||||| ||||||| || |||||| |||||||||||||||||||   ||||||||  |||||||  | |||| || |||| |||||  |||||  |||||    
T  33582961 gccgccttagcaagagtgtgagcagccatgttcgcttgtcgcct---aaactttacctcaaagttaggatgtaaaactaaaatagacttaataagagaaa 33582865  T
Q  124 ctatgacataaaactc 139  Q
    ||| ||||| ||||||    
T  33582864 ctaagacatgaaactc 33582849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 44936011 - 44936104
Alignment:
Q  40 tatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacata 133  Q
    ||||||||||||||||||||||||  ||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| ||||||| || |||||    
T  44936011 tatgagcaaccatgttcgcttgtctgctaacaaacttcacctcgaagttggaatgtaaagataactgataaataataatagaaacaataacata 44936104  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 49119328 - 49119365
Alignment:
Q  39 gtatgagcaaccatgttcgcttgtcgcctagcaaactt 76  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  49119328 gtatgagcaaccatgttcgcttgtctcctaacaaactt 49119365  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 41835240 - 41835324
Alignment:
Q  40 tatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 124  Q
    |||||| ||||||||||||||||| |||| ||||||| || || || | ||||||| ||| ||||  | |||||||| |||||||    
T  41835240 tatgaggaaccatgttcgcttgtctcctaacaaacttcatctcgaaattggaatgtaaagataactgataaataatactagaaac 41835324  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 13415296 - 13415245
Alignment:
Q  25 ccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 76  Q
    |||||||||| |  ||||||||||||||||||||||||| ||||||||||||    
T  13415296 ccgccctagctaaagtatgagcaaccatgttcgcttgtctcctagcaaactt 13415245  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 124
Target Start/End: Original strand, 477971 - 478069
Alignment:
Q  26 cgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 124  Q
    ||||||||| |  ||||||||||||||||||||||||| |||| ||||||| |  |  |||| ||||||| ||| ||||  | ||||||||||||||||    
T  477971 cgccctagctaaggtatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaatgtaaagataactgataaataatattagaaac 478069  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 109
Target Start/End: Original strand, 8670227 - 8670312
Alignment:
Q  24 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacataga 109  Q
    |||||||||| ||| || |||||||||||||| | |||||||||| |||||||||  ||||||| || |||| || |||| |||||    
T  8670227 gccgccctagtaagagtgtgagcaaccatgtttgtttgtcgcctaacaaactttacctcaaagttgggatgtaaaactaaaataga 8670312  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 7127496 - 7127388
Alignment:
Q  25 ccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 124  Q
    |||||||||| |  |||||||||| |||||||||||||| |||| ||||||| |  ||||||| ||||||| ||| ||||  | |||||||| | |||||    
T  7127496 ccgccctagctaaagtatgagcaatcatgttcgcttgtctcctaacaaacttcacatcaaagttggaatgtaaagataactgataaataatacttgaaac 7127397  T
Q  125 tatgacata 133  Q
     || |||||    
T  7127396 aataacata 7127388  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 11870523 - 11870486
Alignment:
Q  39 gtatgagcaaccatgttcgcttgtcgcctagcaaactt 76  Q
    ||||||||||||||||||||||||| |||| |||||||    
T  11870523 gtatgagcaaccatgttcgcttgtctcctaacaaactt 11870486  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 16732206 - 16732107
Alignment:
Q  25 ccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 124  Q
    |||||||||| |  ||||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |||||||    
T  16732206 ccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaac 16732107  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 124
Target Start/End: Complemental strand, 17710340 - 17710241
Alignment:
Q  25 ccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 124  Q
    |||||||||| |  ||||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |||||||    
T  17710340 ccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaac 17710241  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 9328530 - 9328615
Alignment:
Q  39 gtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 124  Q
    ||||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |||||||    
T  9328530 gtatgagcaaccatgttcgcttgtctcctaacaaacttcacatcgaagttggaatgtaaagataactgataaataatactagaaac 9328615  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 6056283 - 6056375
Alignment:
Q  17 agaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacataga 109  Q
    |||| |||||||||||||||  |||||| |||||||||||||||| |||| | ||||||| |  ||||||| ||||  | ||||||| |||||    
T  6056283 agaacatgccgccctagcaatcgtatgaacaaccatgttcgcttgacgcccaacaaacttcacctcaaagttggaaaataaagctaatataga 6056375  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 24139285 - 24139233
Alignment:
Q  24 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 76  Q
    ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  24139285 gccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 24139233  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 24251713 - 24251661
Alignment:
Q  24 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 76  Q
    ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  24251713 gccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 24251661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 44481361 - 44481309
Alignment:
Q  24 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 76  Q
    ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  44481361 gccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 44481309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 28598136 - 28598195
Alignment:
Q  17 agaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 76  Q
    ||||||||||||||||||||  ||||||||| ||||||| ||||| |||||  |||||||    
T  28598136 agaatatgccgccctagcaatcgtatgagcagccatgtttgcttgacgcctgacaaactt 28598195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 29200869 - 29200968
Alignment:
Q  25 ccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 124  Q
    |||||||||| |  ||||||||||||||||||| ||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |||||||    
T  29200869 ccgccctagctaaagtatgagcaaccatgttcgtttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaac 29200968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 30824422 - 30824516
Alignment:
Q  39 gtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacata 133  Q
    |||||||||||||||||||||| || |||| ||||||| |  ||||||| ||||||| ||| ||||  | |||||| | ||||||| || |||||    
T  30824422 gtatgagcaaccatgttcgcttatctcctaacaaacttcacttcaaagttggaatgtaaagataactgataaataagactagaaacaataacata 30824516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 22289515 - 22289415
Alignment:
Q  24 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaa 123  Q
    ||||||||||| |   |||||||||||||||||||||||| |||| ||||| | |  || |||| ||||||| ||| ||||  | |||||||| ||||||    
T  22289515 gccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacatcacctcgaagttggaatgtaaagataactgaaaaataatactagaaa 22289416  T
Q  124 c 124  Q
    |    
T  22289415 c 22289415  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 124
Target Start/End: Complemental strand, 9710214 - 9710129
Alignment:
Q  39 gtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 124  Q
    ||||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| ||||  | |||||||| |||||||    
T  9710214 gtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataactgataaataatactagaaac 9710129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 34695817 - 34695869
Alignment:
Q  24 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 76  Q
    ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  34695817 gccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 34695869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 34718229 - 34718281
Alignment:
Q  24 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 76  Q
    ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  34718229 gccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 34718281  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 88833 - 88753
Alignment:
Q  24 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaac 104  Q
    ||||||||||| |  ||||||||||||||||||||||||| || |  |||||| | ||  |||| ||||||| ||||||||    
T  88833 gccgccctagctaaagtatgagcaaccatgttcgcttgtctccaaataaacttcacgttgaagttggaatgtaaagctaac 88753  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 26597386 - 26597482
Alignment:
Q  40 tatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaactatgacataaaa 136  Q
    |||||||||||||||||||||||| |||| ||||||| |  || |||| ||||||| ||| |||   | |||||||| ||||||| || ||||||||    
T  26597386 tatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaatgtaaagataattgaaaaataatactagaaacaataacataaaa 26597482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 20205236 - 20205177
Alignment:
Q  17 agaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 76  Q
    |||||| || |||||||| |  ||||||||||||||||||||||||| |||| |||||||    
T  20205236 agaataggctgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaactt 20205177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 31908324 - 31908409
Alignment:
Q  39 gtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaac 124  Q
    ||||||||||||||||| | || ||| ||| ||||||| || ||||||| | ||||||||| ||||  | ||||||||||| ||||    
T  31908324 gtatgagcaaccatgtttgtttatcgactaacaaacttcatctcaaagttgaaatgtgaagataactgataaataatattataaac 31908409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 8388344 - 8388308
Alignment:
Q  40 tatgagcaaccatgttcgcttgtcgcctagcaaactt 76  Q
    |||||||||||||||||||||||| |||| |||||||    
T  8388344 tatgagcaaccatgttcgcttgtctcctaacaaactt 8388308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 23075090 - 23075054
Alignment:
Q  40 tatgagcaaccatgttcgcttgtcgcctagcaaactt 76  Q
    |||||||||||||||||||||||| |||| |||||||    
T  23075090 tatgagcaaccatgttcgcttgtctcctaacaaactt 23075054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 25731082 - 25731030
Alignment:
Q  24 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 76  Q
    ||||||||||| |  |||||||||||||||||||||| || |||| |||||||    
T  25731082 gccgccctagctaaagtatgagcaaccatgttcgcttatctcctaacaaactt 25731030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 13393 - 13293
Alignment:
Q  24 gccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactttatgtcaaagtcggaatgtgaagctaacatagaaataatattagaaa 123  Q
    |||||||||||||| ||  ||||| |||||||||||||||| ||| |||||||||  ||||||| || |||| || |||| |||||  |||||  |||||    
T  13393 gccgccctagcaagagt--gagcagccatgttcgcttgtcgtctaacaaactttacctcaaagttgggatgtaaaactaaaatagacttaataagagaaa 13296  T
Q  124 cta 126  Q
    |||    
T  13295 cta 13293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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