View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11861_low_26 (Length: 240)
Name: NF11861_low_26
Description: NF11861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11861_low_26 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 37172678 - 37172454
Alignment:
| Q |
18 |
gttaactcttcctctaaggtgtttgaaaaaatttgtatttctgcataataaagtaaaaacactttagcgagcattgaggtttttgaagtagttgtgttgc |
117 |
Q |
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| T |
37172678 |
gttaactcttcctctaaggtgtttgaaaaaatttgcatttctgcataataaagtaaaaacactttagcgagcattgaggtttttgaagtagttgtgttgc |
37172579 |
T |
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| Q |
118 |
tatgctttgctgtgttgataaagtctaag--aaaatattaatctattgggtagacttgtgtttgaaaatcttgccatttctaatcacggcttctcgtgga |
215 |
Q |
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| T |
37172578 |
tatgctttgttgtgttgataaagtctaagaaaaaatattaatctattgggtggacttgtgtttgaaaatcttgccatttctaatcacggctgctcgtgga |
37172479 |
T |
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| Q |
216 |
gagagagatggagaaaatcttggtt |
240 |
Q |
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|||| |||||||||||||||||||| |
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| T |
37172478 |
gagaaagatggagaaaatcttggtt |
37172454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 37211376 - 37211282
Alignment:
| Q |
54 |
atttctgcataataaagtaaaaacactttagcgagcattgaggtttttgaagtagttgtgttgctatgctttgctgtgttgataaagtctaagaaaa |
150 |
Q |
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| T |
37211376 |
atttctgcagaataaagtaaaaagact--agtgagcattgaggttcttgaagtagttgtgttgttatgctttgttgggctaataaagtctaagaaaa |
37211282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 37216981 - 37216887
Alignment:
| Q |
54 |
atttctgcataataaagtaaaaacactttagcgagcattgaggtttttgaagtagttgtgttgctatgctttgctgtgttgataaagtctaagaaaa |
150 |
Q |
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| T |
37216981 |
atttctgcagaataaagtaaaaacact--agtgagcattgaggttcttgaagtagttgtgtttttatgctttgtttggctgataaagtctaggaaaa |
37216887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 7527093 - 7527032
Alignment:
| Q |
54 |
atttctgcataataaagtaaaaacactttagcgagcattgaggtttttgaagtagttgtgtt |
115 |
Q |
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| T |
7527093 |
atttctgcagaacaaagtaaaaacactctagtgagcattgaggttcttgaagtagttatgtt |
7527032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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