View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11861_low_29 (Length: 203)
Name: NF11861_low_29
Description: NF11861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11861_low_29 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 36883164 - 36883352
Alignment:
| Q |
15 |
acatcaagtgaaattttcaagacaacacacgaaaatcttatacaagagagcagcagttggctaaaagacacgtcagaatcctgctccgtcgtatctggcc |
114 |
Q |
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| T |
36883164 |
acatcaagtgaaattttcaagacaacacacgaaaatcttatacaagagagcagcagttggctaaaagacacgtcagaatcctgctccgtcgtatctggcc |
36883263 |
T |
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| Q |
115 |
ttgtagccggtgtttccttcgccacagcaagccaagtacctggtggcacaaccgatgaaggtagtccagtattagaaggcaagcctgca |
203 |
Q |
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| T |
36883264 |
ttgtagccggtgtttcctttgccacagcaagccaagtacctggcggcacaaccgatgaaggcagtccagtattagaaggcaagcctgca |
36883352 |
T |
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Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 36893167 - 36893355
Alignment:
| Q |
15 |
acatcaagtgaaattttcaagacaacacacgaaaatcttatacaagagagcagcagttggctaaaagacacgtcagaatcctgctccgtcgtatctggcc |
114 |
Q |
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|||||||| ||||||||||||| ||||||| || ||||||| |||| || ||| |||||||||||||| || ||||||||||| || ||||||| || |
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| T |
36893167 |
acatcaagagaaattttcaagaaaacacacaaaggtcttataaaagacagtagcgaatggctaaaagacacatcggaatcctgctctgttgtatctgccc |
36893266 |
T |
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| Q |
115 |
ttgtagccggtgtttccttcgccacagcaagccaagtacctggtggcacaaccgatgaaggtagtccagtattagaaggcaagcctgca |
203 |
Q |
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| T |
36893267 |
ttgtagctggtgtttcctttgccacagcaagcgctgtacctggcggcacaactgatcaaggtagaccggtattagaaggcaagcctgca |
36893355 |
T |
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