View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11861_low_7 (Length: 628)
Name: NF11861_low_7
Description: NF11861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11861_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 284 - 612
Target Start/End: Original strand, 27205033 - 27205366
Alignment:
| Q |
284 |
tatgaagtgcttttcaaggcttcctatctacgtgtatcgtaatgaatgttgatttatctatggtaatgtgtttgtttatatcttcctgttttatcagttc |
383 |
Q |
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| T |
27205033 |
tatgaagtgcttttcaagtcttcatatctacgtgtaccgtaatgaatgttgatttatctatgctaatgtgtttgtttatatcttcctgttttatcagttt |
27205132 |
T |
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| Q |
384 |
aatataaatcgcatattattaaattta----gttgccaaagatttccttctactttggatgaaggaatcatgtc-gatctaaatgtagatattatataac |
478 |
Q |
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| T |
27205133 |
aatataaatcgcatattattaaatttaattagttgccaaagatttccttctactttggatgaaggaatcatgtttgctctaaatgtagatattatataac |
27205232 |
T |
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| Q |
479 |
ctgttcaaatgctaccacaaaatacaatgcttttcaagttggatctaaatctaatttttgtgaaacattaacaattcgtaactattgggttgtgtggaag |
578 |
Q |
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| T |
27205233 |
ctgttcaaatgctaccacaaaatacaatgcttttcaagttggatctaaatctaatttttgtgaaacattaaaaattcgtaactattgggttgtgtggaag |
27205332 |
T |
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| Q |
579 |
aatgagttacatgttcaaaatagtaactaaatat |
612 |
Q |
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| T |
27205333 |
aatgagttacatgttcaaaatagtaactaaatat |
27205366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 56 - 286
Target Start/End: Original strand, 27204751 - 27204981
Alignment:
| Q |
56 |
agaaagagccaaagatgatctgcaccaacactaacaatgcaacctgaattaaccactttagaatagatgttacgatccatgtgctgccagcgttcacctc |
155 |
Q |
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| T |
27204751 |
agaaagaaccaaagatgatctgcaccaacactaacaatgcaacctgaattaaccactttggaatagacgttacgatccatgtgctgccagcgttcacctc |
27204850 |
T |
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| Q |
156 |
tttagtatgtttttctgttttctgtatccgtgtattgtgtctgtagtgtgcaatatcaactatgaagcactttagttacactctgttgcacctttctgca |
255 |
Q |
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| T |
27204851 |
tttagtatgtttttctgttttttgtattcgtgtattgtgtctgtagtgtgtaatatcaactatgaagcactttcgttacattctgttgcacctttctgca |
27204950 |
T |
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| Q |
256 |
cctttggtctacctgtgttgtactcttttat |
286 |
Q |
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| T |
27204951 |
cctttgttctacctgtgttgtactcttttat |
27204981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 27203439 - 27203488
Alignment:
| Q |
11 |
tgtgatggtacatgatccaaataacaatgaggttgaggtggcagtagaaa |
60 |
Q |
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| T |
27203439 |
tgtgatggtacatgatccaaataacaatgagattgaggtggcagtagaaa |
27203488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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