View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11862_high_1 (Length: 509)
Name: NF11862_high_1
Description: NF11862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11862_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 13 - 493
Target Start/End: Original strand, 37767674 - 37768152
Alignment:
| Q |
13 |
aaagaaaaacatcataaatttgcatattcatcacgaccagaccagaccaactatatatcatcagatccaataacaacattcaaattggttcaatctctct |
112 |
Q |
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| T |
37767674 |
aaagaaaaacatcataaatttgcatattcatcacgaccagaccagaccaactatatatcatcagatccaataacaacattcaaattggttcaatctc--t |
37767771 |
T |
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| Q |
113 |
gcaaaggatccatgcatactcatttaaaagaacttagatttagtatataatatataccttccgaggtttaacttctcatccaaaagcatggatgcgacga |
212 |
Q |
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| T |
37767772 |
gcaaaggatccatgcatactcatttaaatgaacttagatttagtatataatatataccttccgaggtttaacttctcatccaagagcatggatgcgacga |
37767871 |
T |
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| Q |
213 |
aagctacaatcaaaagcattagagggttgaaagcagacgcatataaaggtcctttcttctgtacgacccatgccatgacaaaaatcattattccagatgc |
312 |
Q |
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| T |
37767872 |
aagctacaatcaaaagcattagagggttgaaagcagacgcatataaaggtcctttcttctgtacgacccatgccatgacaaaaatcattattccagatgc |
37767971 |
T |
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| Q |
313 |
aaaaactcccttcaaataattaacacattaaacaaaacatcaaatcctttatgattcatcaatttcacaaatcatatgatatgaccatagttctagcaat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37767972 |
aaaaactcccttcaaataattaacacattaaacaaaacatcaaatcctttatgattcatcaatttcacaaatcatatgatatgaccatagttctagcaat |
37768071 |
T |
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| Q |
413 |
gaattaacattaacatgaagcataccgaaaaaacaacggtgaggagcctgatattccaaccaagtttccattggttcaaat |
493 |
Q |
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| T |
37768072 |
gaattaacattaacatgaagcataccgaaaaaacaacggtgaggagcctgatatcccaaccaagtttccattggttcaaat |
37768152 |
T |
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