View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11862_high_2 (Length: 489)
Name: NF11862_high_2
Description: NF11862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11862_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 21 - 469
Target Start/End: Complemental strand, 3815714 - 3815268
Alignment:
| Q |
21 |
cgagttcaagtaccctaaatttatgaaaagtatagaatatatcttattatttattggcataccannnnnnnnatgcttaactatttttatccaacaaaac |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3815714 |
cgagttcaagtaccctaaatttatgaaaagtatagaatgt--cttattatttattggcataccattttttttatgcttaactatttttatccaacaaaac |
3815617 |
T |
|
| Q |
121 |
tgtaaggatgtgtttgatttacaaatcagtaagtatcgaatataacaatacataactgtatttgaaaactttttatacgccatattgtttgatggttgat |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3815616 |
tgtaaggatgtgtttgatttacaaatcagtaagtaccgaatataacaatacataattatatttgaaaactttttatacgccatattgtttgatggttgat |
3815517 |
T |
|
| Q |
221 |
gcataagacaaataattatcgtactacatcttatttgatatgtcttttcacataagaaagtaatatacttttcatacccttttatataaagacaagggag |
320 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3815516 |
gcataagacaaataattatcgaactacaccttatttgatatgtcttttcacataagaaagtattatacttttcatacccttttatataaagacaagggag |
3815417 |
T |
|
| Q |
321 |
gagaaaaataaaagaatatggtaaatagtaaaaaacactcttggaattgtaaatgattgtgaatactcccctcaaattataattaacatactattttaaa |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3815416 |
gagaaaaataaaagaatatggtaaatagtaaaaaaccctcttggaattgtaaatgattgtgaatactcccctcaaattataattaacatactattttaaa |
3815317 |
T |
|
| Q |
421 |
aagtgcttatatgattgtttaacattgaagtgagatgttcaaaatgagc |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3815316 |
aagtgcttatatgattgtttaacattgaagtgagatgttcaaaatgagc |
3815268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University