View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11862_high_4 (Length: 427)
Name: NF11862_high_4
Description: NF11862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11862_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 412
Target Start/End: Complemental strand, 35675822 - 35675416
Alignment:
| Q |
13 |
agaggaaacaatcaatcatcttttcttgaagtgtgacttttacggtaacttttgacatattgttcttcgttggctgggaatctacattgttcaatttggt |
112 |
Q |
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||||||||| |||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35675822 |
agaggaaacgatcaatcatcttttattggagtgtgacttttacggtaacctttgacatattgttcttcgttggctgggaatctacattgttcaatttggt |
35675723 |
T |
|
| Q |
113 |
gatattagtgctcacacgtttcagtttgacggcactcatgtcttcaaaaagggaatttgtgcttgtattaaggcgatttggttggcttatattttactca |
212 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35675722 |
gatattagtgctcacatgtttcagtttgacggcactcatgtcttcaaaaagggaatttgtgcttgtattcaggcgatttggttggcttatattttactca |
35675623 |
T |
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| Q |
213 |
tttgaaaagagcgaaattcaa-------caataagcaaatttctttggaacaacttttcgagcgtgtcaagcttcattcttggtggtggatgaagataca |
305 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
35675622 |
tttgaaaagagcgaaatgcaagaatcttcaataagcaaatttctttggaacaacttttcgagcgtgtcaagcttcattcttggtggtgggcggagataca |
35675523 |
T |
|
| Q |
306 |
aaaactagctcaattcgttgatttccattcgtggtggacaaatacttctcttttattggccttaacactatgtaatggtggttttgtcatcttttcagtg |
405 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35675522 |
aaaaccagctcaattcgttgattttcattcgtggtggacaaatacttctcttttattggccttaacactatgtaatggtggttttgtcatcttttcagtg |
35675423 |
T |
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| Q |
406 |
ttgtttt |
412 |
Q |
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||||||| |
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| T |
35675422 |
ttgtttt |
35675416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 387
Target Start/End: Complemental strand, 45301184 - 45301058
Alignment:
| Q |
262 |
ttcgagcgtgtcaagcttcattcttggtggtggatgaagatacaaaaactagctcaattcgttgatttccattcgtggtggacaaatacttctcttt-ta |
360 |
Q |
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|||||||||||||| ||||||| |||||||||| ||||| || ||| |||||||||| ||||||| ||| ||||||||| ||| | ||||||| || |
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| T |
45301184 |
ttcgagcgtgtcaaacttcatttttggtggtggttgaaggctcacaaatcagctcaattcattgatttttatttgtggtggacgaatccatctctttgta |
45301085 |
T |
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| Q |
361 |
ttggccttaacactatgtaatggtggt |
387 |
Q |
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| T |
45301084 |
tatgtttcaacactatgtaatggtggt |
45301058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 348
Target Start/End: Original strand, 3557871 - 3557949
Alignment:
| Q |
270 |
tgtcaagcttcattcttggtggtggatgaagatacaaaaactagctcaattcgttgatttccattcgtggtggacaaat |
348 |
Q |
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||||||||||||||||| ||||||| ||||| || || |||||||| |||||| |||| |||||||| ||||||||| |
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| T |
3557871 |
tgtcaagcttcattctttgtggtggctgaaggctcacaacctagctcagttcgttaattttcattcgtgatggacaaat |
3557949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 38107520 - 38107481
Alignment:
| Q |
14 |
gaggaaacaatcaatcatcttttcttgaagtgtgactttt |
53 |
Q |
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| T |
38107520 |
gaggaaacaataaatcatcttttcttggagtgtgactttt |
38107481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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