View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11862_low_1 (Length: 1596)
Name: NF11862_low_1
Description: NF11862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11862_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 654; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 694 - 1436
Target Start/End: Original strand, 26490118 - 26490857
Alignment:
| Q |
694 |
cctttggcgtagagagttgtttgagtgggaaaaggagaggtttattgggcttttgggtcggtcggaaggggtggtgctacggaaccgaccggatatttgg |
793 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
26490118 |
cctttggcgtagagagttgtttgaatgggaaaaggagaggtttattgggcttttgggtcggttggaaggggtggtgctaaggaacctaccggatatttgg |
26490217 |
T |
|
| Q |
794 |
gtgtagaaatcgggtaaagagggagtgttttccgttcattcttgctatttgttacttcaaaatttgaggcctttagaagaacggttgagccaagaggagg |
893 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||| ||||||||| |
|
|
| T |
26490218 |
gtgtggaaatcgggtaaagagggagtgttttccgttcattcttgctatttattacttcaaaatttgaggcctttanaa---cggttgagctaagaggagg |
26490314 |
T |
|
| Q |
894 |
aaattattttccgggaattgtggaagagtaaggcgcttgctaaggttttggttttttcatggactttattccttgataggattccaacaaaggtgaacct |
993 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26490315 |
aaaatattttccgggaattgtggaagagtaaggcgctagctaaggttttggttttttcgtggactttattccttgataggattccaacaaaggtgaacct |
26490414 |
T |
|
| Q |
994 |
tgctaagagaaggcttttcggggttgtggaattgaagcggtgtgtgttttgtgggagtgaaaatgaaatggagattcaccttttccttcattgcgatgtg |
1093 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26490415 |
tgctaagagaaggcttttcggggttgaggaattgaagcggtgtgtgttttgtgggagtgaaaatgaaacggagattcaccttttccttcattgcgatgtg |
26490514 |
T |
|
| Q |
1094 |
ccgatgtcatttccaaagtttggcgggaggtgatgaagtggttgaattttaatcttatttctcctccaaatttattcattcatgcaatttgttggtctag |
1193 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26490515 |
tcgatgtcatttccaaaatttggcgggaggtgatgaagtggttgaattttaatcttatttctcctccaaatttattcattcatgcaatttgttggtctag |
26490614 |
T |
|
| Q |
1194 |
agaagtaagagctgagaagcttaaaaaaggggtatggttgatttggcatgcggtgatttgggtggtttggaggtctcgtaatagttgtatttttaacaat |
1293 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26490615 |
agaagtaagagctgagaagcttaaaaaaggggcatggttgatttggcatgcggtgatttgggtggtttggaggtgtcgtaatagttgtatttttaacaat |
26490714 |
T |
|
| Q |
1294 |
aaggcttttgaggtggaggatatggtggaccaaatcaaagtgctgtcatggcaatggagcttggctagattgcatattgcaacttgtttattttacgagt |
1393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26490715 |
aaggcttttgaggtggaggatatggtggaccaaatcaaagtgctgtcatggcaatggagcttggctagattgcatattgcaacttgtttattttacgagc |
26490814 |
T |
|
| Q |
1394 |
ggtgttggaaccctcgcttctgtcttggtgcttaattagggcc |
1436 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26490815 |
ggtgttggaaccctcgcttctgtcttagtgcttaattagggcc |
26490857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 1e-97
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 26531177 - 26531394
Alignment:
| Q |
7 |
agcaaaggcgaggagtgtgtcaacttgggaaccggtgttggatcgtattaatgcgaaactcaactcttggggaaacaaatatattagtttaggagggcgt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| || || |
|
|
| T |
26531177 |
agcaaaggcgaggagtgtgtcaacttgggaaccggtgttggatcgtattagtgcgaaactcaactcttggggaaacaaatatattactttgggaaggtgt |
26531276 |
T |
|
| Q |
107 |
attaccctcttaaactcggttcttaattcggtaccgatcttttaaatctcttttttgaagatatcggtgaaagtcataaaaaaggtggaggctatccaaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26531277 |
attaccctcttaaactcggttcttaattcggtaccgatcttttatttgtcttttttgaagataccggtgaaagtcataaaaaaggtggaggctatccaaa |
26531376 |
T |
|
| Q |
207 |
gaaggtttctttgggggg |
224 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
26531377 |
gaaggtttctttgggggg |
26531394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 1e-48
Query Start/End: Original strand, 1462 - 1577
Target Start/End: Original strand, 26490872 - 26490987
Alignment:
| Q |
1462 |
ttctggttagtttatgtgcagtggtctgttttgttcccctgcatttttatggttttttcgggtcctattaggtgctgccagcagctgtttgcggtggttt |
1561 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
26490872 |
ttctggttagtttatgtgcagtggtctgttttgttcccctgcatttttctggttttttggggtccttttaggtgctgccagcagctgtttgcggcggttt |
26490971 |
T |
|
| Q |
1562 |
tttgcttgttgtgcgg |
1577 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
26490972 |
tttgcttgttgtgcgg |
26490987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 258 - 1408
Target Start/End: Original strand, 13854576 - 13855716
Alignment:
| Q |
258 |
gtggagtaaggtgtgtcaaccgaggagtcaaggggggcttggtgttagagatatt------gttaatgttagccttttagcgaagttgcggtggcggctt |
351 |
Q |
| |
|
|||||| ||||| || ||||| || || ||||||| || ||||||||||||||| |||||||||||||| ||||| |||| | |||||||||| |
|
|
| T |
13854576 |
gtggaggaaggtttgccaacctagatgtaaagggggcctcggtgttagagatattagattggttaatgttagcctcttagctaagtggtggtggcggctc |
13854675 |
T |
|
| Q |
352 |
cttgatgaccaaccgtcgttgtggaaagaggtgcttgaagatatttacgggcctagggtgggcgctaggaccatgttggtggggggaaaattggccttcc |
451 |
Q |
| |
|
|| | || ||| |||| ||||||||||||||||||||||||||||| || ||||||||| | ||||||||||| |||||||| ||| |||||| | |
|
|
| T |
13854676 |
ctacaagatcaatcgtctttgtggaaagaggtgcttgaagatatttatggacctagggtgagttctaggaccatgatggtggggagaa--ttggccggct |
13854773 |
T |
|
| Q |
452 |
tatgcgactagatggtggaaagatttattgatgttggaggaggtgggtggggtaaggtggtttggtagggagttgattaggaagattggtgatggaagaa |
551 |
Q |
| |
|
||||| | ||||||||||||||||| ||| ||||||||||||||| |||| ||||||||| |||||||||||||||||| | |||||||| || | |
|
|
| T |
13854774 |
tatgcttcaagatggtggaaagatttgatgagtttggaggaggtgggtagggttaggtggtttccaagggagttgattaggaaggtgggtgatggtagga |
13854873 |
T |
|
| Q |
552 |
gttcgttgttttggaaggatgcataggaatctagtgtgcctttatgtgagtccttcccgcac--cttttctcattaacactctcacaagatgtgtcggtg |
649 |
Q |
| |
|
| ||||| ||||||||||| || | ||| ||||||||||||||| | ||||| || |||| | ||||| || || | || | ||||||| | | |
|
|
| T |
13854874 |
gctcgtttttttggaaggacgcttgggactctagtgtgcctttaagggagtcttttccgcgcgccttttttccctatcgcttgctcaagatgggatgc-- |
13854971 |
T |
|
| Q |
650 |
ggggaggtgtgcggtttaaatttggtgggggagagatggagggtcctttggcgtaga---gagttgtttgagtgggaaaaggagaggtttattgggcttt |
746 |
Q |
| |
|
||||| |||| | | | ||| || ||||| |||||||||| | |||||||||| ||||||||||||||||||||||||||| | ||| ||||| |
|
|
| T |
13854972 |
ggggatttgtgggatatgaatgcggagggggtgagatggaggttgtattggcgtagactagagttgtttgagtgggaaaaggagaggctccttgagcttt |
13855071 |
T |
|
| Q |
747 |
tgggtcggtcggaaggggtggtgctacggaaccgaccggatatttgggtgtagaaatcgggtaaagagggagtgttttccgttcattcttgctatttgtt |
846 |
Q |
| |
|
|||| |||| |||||||||||| ||| || || | ||||||||||||||| |||| ||| |||||||||||| ||||| ||| ||||||||||||| | |
|
|
| T |
13855072 |
tgggacggttggaaggggtggtcctaaggtactgggcggatatttgggtgtggaaaccggataaagagggagttttttctgttaattcttgctattttct |
13855171 |
T |
|
| Q |
847 |
acttcaaaatttgaggcctttagaagaacggttgagccaagaggaggaaattattttccgggaattgtggaagagtaaggcgcttgctaaggttttggtt |
946 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||| | ||||||||| |||||||||| || || |||||||||||||||| || ||||| |||| | |
|
|
| T |
13855172 |
acttcaaaatttgaggcttttagaagatcggttgagctatgaggaggaagttattttccgtgagttatggaagagtaaggcgccggcaaaggtattggct |
13855271 |
T |
|
| Q |
947 |
ttttcatggactttattccttgataggattccaacaaaggtgaaccttgctaagagaaggcttttcggggttgtggaattgaagcggtgtgtgttttgtg |
1046 |
Q |
| |
|
||||| ||||||||||| || |||||||| || || | ||||||||||| ||||||||||| | |||| | || | ||| ||||||||||||||| |
|
|
| T |
13855272 |
ttttcgtggactttatttctagataggatcccgactatggtgaaccttgggaagagaaggctactgagggtggaagattctaagaggtgtgtgttttgtg |
13855371 |
T |
|
| Q |
1047 |
ggagtgaaaatgaaatggagattcaccttttccttcattgcgatgtgccgatgtcatttccaaagtttggcgggaggtgatgaagtggttgaattttaat |
1146 |
Q |
| |
|
|| || || | |||| || | | ||||| ||||||||||| |||||||||||| ||||||| | |||||||||||| |||||||||||||||| |
|
|
| T |
13855372 |
ggtgtcaagacgaaacggtggtgcacctattccttcattg--------cgatgtcatttctaaagtttagagggaggtgatgaggtggttgaattttaat |
13855463 |
T |
|
| Q |
1147 |
cttatttctcctccaaatttattcattcatgcaatttgttggtctagagaagtaagagctgagaagcttaaaaaaggggtatggttgatttggcatgcgg |
1246 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||| ||||||||| | |||||| ||||||||| ||||||| |
|
|
| T |
13855464 |
cttatttctcctccaaatctattaattcatgcgatttgttggtctagagaagtaagagctaagaagcttagacaaggggcgtggttgattaggcatgc-- |
13855561 |
T |
|
| Q |
1247 |
tgatttgggtggtttggaggtctcgtaatagttgtatttttaacaataaggcttttgaggtggaggatatggtggaccaaatcaaagtgctgtcatggca |
1346 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||| | ||||||||||||| |||||||| |||||||||||| |||| || || |
|
|
| T |
13855562 |
-------ggtggtttggttgtctcgtaatagttgtatttttaataataagattattgaggtggaggaaatggtggatcaaatcaaagtgttgtcgtgaca |
13855654 |
T |
|
| Q |
1347 |
atggagcttggctagattgcatattgcaacttgtttattttacgagtggtgttggaaccctc |
1408 |
Q |
| |
|
|||||| |||||||||||| | ||||| || |||||||| || |||||||||||||| |||| |
|
|
| T |
13855655 |
atggagtttggctagattgaacattgcgacgtgtttattctatgagtggtgttggaatcctc |
13855716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 183; Significance: 3e-98; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 3e-98
Query Start/End: Original strand, 784 - 1409
Target Start/End: Complemental strand, 30635763 - 30635160
Alignment:
| Q |
784 |
ggatatttgggtgtagaaatcgggtaaagagggagtgttttccgttcattcttgctatttgttacttcaaaatttgaggcctttagaagaacggttgagc |
883 |
Q |
| |
|
|||||||||||| | |||||||| ||||||| |||| |||||| || ||||||| |||||| ||||||||||||||||||| |||||||| ||||| ||| |
|
|
| T |
30635763 |
ggatatttgggtatggaaatcggataaagagagagt-ttttccattaattcttgttatttggtacttcaaaatttgaggccattagaagatcggtttagc |
30635665 |
T |
|
| Q |
884 |
caagaggaggaaattattttccgggaattgtggaagagtaaggcgcttgctaaggttttggttttttcatggactttattccttgataggattccaacaa |
983 |
Q |
| |
|
| ||||||||| ||||||| | ||| |||||||| |||||||||| | ||||| |||| ||||| ||||||||||| ||||||||||| | || | |
|
|
| T |
30635664 |
tatgaggaggaagttatttttcaggagttgtggaatagtaaggcgccatcaaaggtgttggctttttagtggactttatttcttgataggatcctgacta |
30635565 |
T |
|
| Q |
984 |
aggtgaaccttgctaagagaaggcttttcggggttgtggaattgaagcggtgtgtgttttgtgggagtgaaaatgaaatggagattcaccttttccttca |
1083 |
Q |
| |
|
|| ||||||||| ||||||||||||| ||||||| || | | | ||||||||||||| ||| || || | ||||||| | | ||||| |||||||| |
|
|
| T |
30635564 |
ag-tgaaccttgtggagagaaggcttttgggggttgaagattctatgaggtgtgtgttttgcgggtgtcaagacgaaatggtggtgcacctattccttca |
30635466 |
T |
|
| Q |
1084 |
ttgcgatgtgccgatgtcatttccaaagtttggcgggaggtgatgaagtggttgaattttaatcttatttctcctccaaatttattcattcatgcaattt |
1183 |
Q |
| |
|
||| ||||| |||||| |||| || | |||||||||||| |||||||| |||||||| ||||| | |||||||| ||||||||||||| |||| |
|
|
| T |
30635465 |
ttgtgatgt--------catttctaaaggttagagggaggtgatgaggtggttgacttttaatcatatttattctccaaatatattcattcatgcgattt |
30635374 |
T |
|
| Q |
1184 |
gttggtctagagaagtaagagctgagaagcttaaaaaaggggtatggttgatttggcatgcggtgatttgggtggtttggaggtctcgtaatagttgtat |
1283 |
Q |
| |
|
||||||||||| ||||||||||| |||| |||| | |||||| ||||||||||||||||| |||||||||| ||| ||||| |||||| |
|
|
| T |
30635373 |
gttggtctagataagtaagagctaagaaacttagacaaggggcgtggttgatttggcatgc---------ggtggtttggttgtc---taataattgtat |
30635286 |
T |
|
| Q |
1284 |
ttttaacaataaggcttttgaggtggaggatatggtggaccaaatcaaagtgctgtcatggcaatggagcttggctagattgcatattgcaacttgttta |
1383 |
Q |
| |
|
|||||| |||||| | |||||||||||||||||||||| |||||||||||| || | |||||||| ||||||||||||||| | ||||| || |||||| |
|
|
| T |
30635285 |
ttttaataataagattattgaggtggaggatatggtggatcaaatcaaagtgttggcgtggcaatgaagcttggctagattgaacattgcgacgtgttta |
30635186 |
T |
|
| Q |
1384 |
ttttacgagtggtgttggaaccctcg |
1409 |
Q |
| |
|
|| |||||||||| |||||||||||| |
|
|
| T |
30635185 |
ttctacgagtggtattggaaccctcg |
30635160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 24 - 312
Target Start/End: Original strand, 29126445 - 29126734
Alignment:
| Q |
24 |
tgtcaacttgggaaccggtgttggatcgtattaatgcgaaactcaactcttggggaaacaaatatattagtttaggagggcgtattaccctcttaaactc |
123 |
Q |
| |
|
|||| |||||||| ||||||||||| || ||||| | ||||| || |||||||| || | ||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
29126445 |
tgtctacttgggagccggtgttggagcggattaaagataaacttaattcttgggggaatagatatattagtttaggagggcgtattgtcctcttaaattc |
29126544 |
T |
|
| Q |
124 |
ggttcttaattcggtaccgatcttttaaatctcttttttgaagatatcggtgaaagtcataaaaaaggtggaggctatccaaagaaggtttctttgggg- |
222 |
Q |
| |
|
||| | |||||| |||| || ||||| | || ||||||||||| |||| || || || || |||||||||| ||| ||||| |||||||||||||| |
|
|
| T |
29126545 |
ggtgttaaattcgatacctattttttatctttcctttttgaagatgccggttaaggtgattaacaaggtggagggtattcaaaggaggtttctttggggt |
29126644 |
T |
|
| Q |
223 |
ggtgtttgggggaggaaaaagatttgttggatgaagtggagtaaggtgtgtcaaccgaggagtcaaggggggcttggtgttagagatatt |
312 |
Q |
| |
|
||| || |||| || |||||||||||| |||||||| || || |||||||| || ||||| ||||| ||||| || ||||||||| |
|
|
| T |
29126645 |
ggtattgggggtcataagaagatttgttgggtgaagtggtcgaaagtttgtcaacctagaagtcatgggggtcttggggtgagagatatt |
29126734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 8e-28
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 20987732 - 20988027
Alignment:
| Q |
19 |
gagtgtgtcaacttgggaaccggtgttggatcgtattaatgcgaaactcaactcttgggga--aacaaatatattagtttaggagggcgtattaccctct |
116 |
Q |
| |
|
|||| |||| || ||||||||||||||||||| ||||||||| | || || |||||||| || || || ||||||| |||||| || ||| |||| |
|
|
| T |
20987732 |
gagtatgtctacatgggaaccggtgttggatcatattaatgctacgcttaattcttgggggggaataagtacattagttgaggaggacgaattgttctct |
20987831 |
T |
|
| Q |
117 |
taaactcggttcttaattcggtaccgatcttttaaatctcttttttgaagatatcggtgaaagtcataaaaaaggtggaggctatccaaagaaggtttct |
216 |
Q |
| |
|
|||| ||||| |||||| | || |||||||| | |||||||||||||| ||||||||||| || |||||| |||||||||| ||||| | || || |
|
|
| T |
20987832 |
taaattcggtgtcaaattcgatgcctatcttttatctttcttttttgaagatgtcggtgaaagttattaaaaagatggaggctattcaaaggaaattcct |
20987931 |
T |
|
| Q |
217 |
ttggggggtgtttgggggaggaaaaagatttgttggatgaagtggagtaaggtgtgtcaaccgaggagtcaaggggggcttggtgttagagatatt |
312 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||| | | ||||| || | |||||||| || || |||| ||||||||||| ||||||||| |
|
|
| T |
20987932 |
ttggggggtgtttgggggagaaagaagatttgttgggttatttggaggaaattttgtcaacctagaggtaaaggagggcttggtgtgagagatatt |
20988027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 7e-22
Query Start/End: Original strand, 1114 - 1264
Target Start/End: Original strand, 20988819 - 20988969
Alignment:
| Q |
1114 |
tggcgggaggtgatgaagtggttgaattttaatcttatttctcctccaaatttattcattcatgcaatttgttggtctagagaagtaagagctgagaagc |
1213 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||| |||| ||||| |||||||||||||||||||| ||||||||||| ||| | || || | || | |
|
|
| T |
20988819 |
tggctggaggtgatgaattggttgaattttaattttatctctcccccaaatttattcattcatgctatttgttggtcgagacatgtgaggaacaaaaatc |
20988918 |
T |
|
| Q |
1214 |
ttaaaaaaggggtatggttgatttggcatgcggtgatttgggtggtttgga |
1264 |
Q |
| |
|
||| | || || ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20988919 |
ttagacgagaggcgtggttgatttggcatgcggtggtttgggtggtttgga |
20988969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 1303 - 1418
Target Start/End: Complemental strand, 6945353 - 6945238
Alignment:
| Q |
1303 |
gaggtggaggatatggtggaccaaatcaaagtgctgtcatggcaatggagcttggctagattgcatattgcaacttgtttattttacgagtggtgttgga |
1402 |
Q |
| |
|
|||||||| || |||||||| ||| | || ||||| || |||||||| || ||| ||| ||| | |||||||||||||| |||||||||||||| |||| |
|
|
| T |
6945353 |
gaggtggatgagatggtggatcaagttaaggtgctctcgtggcaatgaagtttgagtaggttgaacattgcaacttgtttgttttacgagtggtgatgga |
6945254 |
T |
|
| Q |
1403 |
accctcgcttctgtct |
1418 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
6945253 |
accctcgcttttgtct |
6945238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1103 - 1356
Target Start/End: Original strand, 17778442 - 17778695
Alignment:
| Q |
1103 |
tttccaaagtttggcgggaggtgatgaagtggttgaattttaatcttatttctcctccaaatttattcattcatgcaatttgttggtctagagaagtaag |
1202 |
Q |
| |
|
|||| ||||||||||||||||| ||| |||||| |||||||| | ||| |||| || ||| |||||||||| || | |||||||| ||||| || | |
|
|
| T |
17778442 |
tttctaaagtttggcgggaggtaatgcggtggttagattttaatttaattactccccctaatctattcattcacgctttgtgttggtcaagagaggtgaa |
17778541 |
T |
|
| Q |
1203 |
agctgagaagcttaaaaaaggggtatggttgatttggcatgcggtgatttgggtggtttggaggtctcgtaatagttgtatttttaacaataaggctttt |
1302 |
Q |
| |
|
|| |||| |||| || || | ||||||||||||||||||||| ||| | ||||||||| | | |||| | |||||||| |||||| |||| |
|
|
| T |
17778542 |
ctctaagaaacttagaaggggtgcttggttgatttggcatgcggtggtttagatggtttggaaggtgaggaataatctgatttttaataataagattttt |
17778641 |
T |
|
| Q |
1303 |
gaggtggaggatatggtggaccaaatcaaagtgctgtcatggcaatggagcttg |
1356 |
Q |
| |
|
| |||||| || ||||||| ||||| |||||| |||||||||||||||||||| |
|
|
| T |
17778642 |
ggggtggatgagttggtggaacaaattaaagtgttgtcatggcaatggagcttg |
17778695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 308
Target Start/End: Original strand, 17777501 - 17777654
Alignment:
| Q |
155 |
tcttttttgaagatatcggtgaaagtcataaaaaaggtggaggctatccaaagaaggtttctttgggg-ggtgtttgggggaggaaaaagatttgttgga |
253 |
Q |
| |
|
|||||||||||||| |||| || || | ||||||||||| | ||| ||||| ||||| |||||||| ||||| ||| || || |||||||||||| |
|
|
| T |
17777501 |
tcttttttgaagatgccggtcaacgtgaataaaaaggtggaaggtattcaaaggaggttcctttggggaggtgta-gggatagaaagaagatttgttggg |
17777599 |
T |
|
| Q |
254 |
tgaagtggagtaaggtgtgtcaaccgaggagtcaaggggggcttggtgttagaga |
308 |
Q |
| |
|
| |||||||||||||| |||||||| || ||| ||||||||||||| || ||||| |
|
|
| T |
17777600 |
ttaagtggagtaaggtttgtcaacctagaagtaaaggggggcttggggtgagaga |
17777654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1316 - 1403
Target Start/End: Original strand, 30456198 - 30456285
Alignment:
| Q |
1316 |
tggtggaccaaatcaaagtgctgtcatggcaatggagcttggctagattgcatattgcaacttgtttattttacgagtggtgttggaa |
1403 |
Q |
| |
|
||||||| ||||||||||| || | ||||||||||| |||| ||||||| | || | ||||||||||||||||| ||||||||||| |
|
|
| T |
30456198 |
tggtggatcaaatcaaagttctagcgtggcaatggagtttggatagattgaagatagagacttgtttattttacgaatggtgttggaa |
30456285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 1376 - 1412
Target Start/End: Original strand, 20990828 - 20990864
Alignment:
| Q |
1376 |
cttgtttattttacgagtggtgttggaaccctcgctt |
1412 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20990828 |
cttgtttattctacgagtggtgttggaaccctcgctt |
20990864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 412
Target Start/End: Complemental strand, 6946316 - 6946219
Alignment:
| Q |
315 |
taatgttagccttttagcgaagttgcggtggcggcttcttgatgaccaaccgtcgttgtggaaagaggtgcttgaagatatttacgggcctagggtgg |
412 |
Q |
| |
|
||||||| |||||||||| || | | | |||||||||||||||| ||| |||||||||||| |||||| | ||||||| || ||||| ||||||| |
|
|
| T |
6946316 |
taatgttcgccttttagctaaatggagatggcggcttcttgatggttaacggtcgttgtggaaggaggtgttagaagataaatatgggccaagggtgg |
6946219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1213 - 1254
Target Start/End: Original strand, 29127633 - 29127674
Alignment:
| Q |
1213 |
cttaaaaaaggggtatggttgatttggcatgcggtgatttgg |
1254 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
29127633 |
cttagaaaaggggtgtggttgatttggcatgcggtggtttgg |
29127674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 3e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 3e-27
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 43458957 - 43459168
Alignment:
| Q |
13 |
ggcgaggagtgtgtcaacttgggaaccggtgttggatcgtattaatgcgaaactcaactcttggggaaacaaatatattagtttaggagggcgtattacc |
112 |
Q |
| |
|
||||| |||| |||| ||||||||||||||||||||| |||||| ||| ||||| || ||||| || || ||||| ||||||||||| || | |||| | |
|
|
| T |
43458957 |
ggcgaagagtatgtctacttgggaaccggtgttggattgtattagtgccaaacttaattcttgagggaataaatacattagtttaggtggacatattgtc |
43459056 |
T |
|
| Q |
113 |
ctcttaaactcggttcttaattcggtaccgatcttttaaatctcttttttgaagatatcggtgaaagtcataaaaaaggtggaggctatccaaagaaggt |
212 |
Q |
| |
|
|||||||||||||| | |||||| | | || ||||| | |||||||||||||| |||| ||||| || ||||||||||| ||||| ||||||| | |
|
|
| T |
43459057 |
ctcttaaactcggtgttaaattcgatggctattttttatctttcttttttgaagatgccggttaaagtgattaaaaaggtggaagctatgcaaagaaaat |
43459156 |
T |
|
| Q |
213 |
ttctttgggggg |
224 |
Q |
| |
|
|||||||||||| |
|
|
| T |
43459157 |
ttctttgggggg |
43459168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 1132 - 1254
Target Start/End: Original strand, 43460027 - 43460149
Alignment:
| Q |
1132 |
tggttgaattttaatcttatttctcctccaaatttattcattcatgcaatttgttggtctagagaagtaagagctgagaagcttaaaaaaggggtatggt |
1231 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| |||||||||||| | ||||||||||| ||| |||| || | ||||||||| | |||||| |||| |
|
|
| T |
43460027 |
tggttgaattttaattttatttctcccccaaacttattcattcatactatttgttggtcgagacaagtgagggacaagaagcttagacgaggggtgtggt |
43460126 |
T |
|
| Q |
1232 |
tgatttggcatgcggtgatttgg |
1254 |
Q |
| |
|
| ||||||||||||||| ||||| |
|
|
| T |
43460127 |
taatttggcatgcggtggtttgg |
43460149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1376 - 1421
Target Start/End: Original strand, 43460262 - 43460307
Alignment:
| Q |
1376 |
cttgtttattttacgagtggtgttggaaccctcgcttctgtcttgg |
1421 |
Q |
| |
|
||||||| |||||||||||||| ||||| |||||||| |||||||| |
|
|
| T |
43460262 |
cttgtttgttttacgagtggtgctggaatcctcgcttttgtcttgg |
43460307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 2e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-25
Query Start/End: Original strand, 73 - 308
Target Start/End: Complemental strand, 16664110 - 16663874
Alignment:
| Q |
73 |
ttggggaaacaaatatattagtttaggagggcgtattaccctcttaaactcggttcttaattcggtaccgatcttttaaa-tctcttttttgaagatatc |
171 |
Q |
| |
|
||||||||| ||||| |||| |||||| || |||||| || |||||||||||| | |||||||| || || |||| | | |||||||||||||| | |
|
|
| T |
16664110 |
ttggggaaataaatacattaatttaggtggacgtattgtccgcttaaactcggtgttaaattcggtgcctatttttttatctttcttttttgaagatgcc |
16664011 |
T |
|
| Q |
172 |
ggtgaaagtcataaaaaaggtggaggctatccaaagaaggtttctttggggggtgtttgggggaggaaaaagatttgttggatgaagtggagtaaggtgt |
271 |
Q |
| |
|
||| ||||| || ||||||||||| ||||| ||||||| ||||||||||||||||| ||| ||| | |||||||||||| | | ||||| ||||||| |
|
|
| T |
16664010 |
ggttaaagtgattaaaaaggtggaagctatgcaaagaaaatttctttggggggtgttggggtgagaaggaagatttgttgggttagttggaggaaggtgt |
16663911 |
T |
|
| Q |
272 |
gtcaaccgaggagtcaaggggggcttggtgttagaga |
308 |
Q |
| |
|
||||||| || || |||| ||||||||||| ||||| |
|
|
| T |
16663910 |
gtcaacctagaggtaaaggtgggcttggtgtgagaga |
16663874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 1132 - 1254
Target Start/End: Complemental strand, 16663064 - 16662942
Alignment:
| Q |
1132 |
tggttgaattttaatcttatttctcctccaaatttattcattcatgcaatttgttggtctagagaagtaagagctgagaagcttaaaaaaggggtatggt |
1231 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| |||||||||||||| ||||||||||| ||| |||| || | ||||||||| | |||||| | || |
|
|
| T |
16663064 |
tggttgaattttaattttatttctcccccaaacttattcattcatgctatttgttggtcgagacaagtgagggacaagaagcttagacgaggggtgttgt |
16662965 |
T |
|
| Q |
1232 |
tgatttggcatgcggtgatttgg |
1254 |
Q |
| |
|
| ||||||||||| ||| ||||| |
|
|
| T |
16662964 |
taatttggcatgctgtggtttgg |
16662942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 889 - 989
Target Start/End: Complemental strand, 16663299 - 16663199
Alignment:
| Q |
889 |
ggaggaaattattttccgggaattgtggaagagtaaggcgcttgctaaggttttggttttttcatggactttattccttgataggattccaacaaaggtg |
988 |
Q |
| |
|
||||||| |||||||||||||| | ||||||||||| || | |||||||| | | |||||| ||||||||| | |||| ||||||||| || |||||| |
|
|
| T |
16663299 |
ggaggaagttattttccgggaaatttggaagagtaaagctccggctaaggtggtagctttttcgtggactttacttcttgttaggattccgactaaggtg |
16663200 |
T |
|
| Q |
989 |
a |
989 |
Q |
| |
|
| |
|
|
| T |
16663199 |
a |
16663199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 1103 - 1409
Target Start/End: Original strand, 5745849 - 5746155
Alignment:
| Q |
1103 |
tttccaaagtttggcgggaggtgatgaagtggttgaattttaatcttatttctcctccaaatttattcattcatgcaatttgttggtctagagaagtaag |
1202 |
Q |
| |
|
|||| ||||||||| | ||||| ||| || |||||||||||||||||| | || || |||||||| ||||||| || | ||||||||||| || || |
|
|
| T |
5745849 |
tttcgaaagtttggagagaggttatgcggttgttgaattttaatcttatcaccccgcctaatttatttcttcatgccatcggctggtctagagaggtgag |
5745948 |
T |
|
| Q |
1203 |
agctgagaagcttaaaaaaggggtatggttgatttggcatgcggtgatttgggtggtttggaggtctcgtaatagttgtatttttaacaataaggctttt |
1302 |
Q |
| |
|
| | ||||||| | | |||||| |||||||||||||| ||||| | |||||| |||||| |||| | || | | ||||| || |||||| ||||| |
|
|
| T |
5745949 |
atcaaagaagctgcatagaggggtgtggttgatttggcacgcggtagtgtgggtgatttggaagtctaggaacaatatgattttcaataataagactttt |
5746048 |
T |
|
| Q |
1303 |
gaggtggaggatatggtggaccaaatcaaagtgctgtcatggcaatggagcttggctagattgcatattgcaacttgtttattttacgagtggtgttgga |
1402 |
Q |
| |
|
||| | ||| ||||||| | || |||||| |||| ||||| ||| | ||| | |||||| |||| | |||||||| ||||| || |||||||||| |
|
|
| T |
5746049 |
gagattttggaattggtggataacataaaagtgttgtcttggcagtggtgtttgtcgagattgaatatagagacttgtttgttttatgaatggtgttgga |
5746148 |
T |
|
| Q |
1403 |
accctcg |
1409 |
Q |
| |
|
||||||| |
|
|
| T |
5746149 |
accctcg |
5746155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 1103 - 1409
Target Start/End: Original strand, 5782808 - 5783114
Alignment:
| Q |
1103 |
tttccaaagtttggcgggaggtgatgaagtggttgaattttaatcttatttctcctccaaatttattcattcatgcaatttgttggtctagagaagtaag |
1202 |
Q |
| |
|
|||| ||||||||| | ||||| ||| || |||||||||||||||||| | || || |||||||| ||||||| || | ||||||||||| || || |
|
|
| T |
5782808 |
tttcgaaagtttggagagaggttatgcggttgttgaattttaatcttatcaccccgcctaatttatttcttcatgccatcggctggtctagagaggtgag |
5782907 |
T |
|
| Q |
1203 |
agctgagaagcttaaaaaaggggtatggttgatttggcatgcggtgatttgggtggtttggaggtctcgtaatagttgtatttttaacaataaggctttt |
1302 |
Q |
| |
|
| | ||||||| | | |||||| |||||||||||||| ||||| | |||||| |||||| |||| | || | | ||||| || |||||| ||||| |
|
|
| T |
5782908 |
atcaaagaagctgcatagaggggtgtggttgatttggcacgcggtagtgtgggtgatttggaagtctaggaacaatatgattttcaataataagactttt |
5783007 |
T |
|
| Q |
1303 |
gaggtggaggatatggtggaccaaatcaaagtgctgtcatggcaatggagcttggctagattgcatattgcaacttgtttattttacgagtggtgttgga |
1402 |
Q |
| |
|
||| | ||| ||||||| | || |||||| |||| ||||| ||| | ||| | |||||| |||| | |||||||| ||||| || |||||||||| |
|
|
| T |
5783008 |
gagattttggaattggtggataacataaaagtgttgtcttggcagtggtgtttgtcgagattgaatatagagacttgtttgttttatgaatggtgttgga |
5783107 |
T |
|
| Q |
1403 |
accctcg |
1409 |
Q |
| |
|
||||||| |
|
|
| T |
5783108 |
accctcg |
5783114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 279
Target Start/End: Complemental strand, 24031959 - 24031921
Alignment:
| Q |
241 |
aagatttgttggatgaagtggagtaaggtgtgtcaaccg |
279 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
24031959 |
aagatttgttgggtgaagtggaggaaggtgtgtcaaccg |
24031921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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