View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11862_low_10 (Length: 310)

Name: NF11862_low_10
Description: NF11862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11862_low_10
NF11862_low_10
[»] chr5 (10 HSPs)
chr5 (57-299)||(30044860-30045099)
chr5 (126-299)||(30070754-30070929)
chr5 (126-283)||(29990929-29991086)
chr5 (140-299)||(29952203-29952362)
chr5 (140-299)||(30006055-30006214)
chr5 (140-299)||(29944082-29944241)
chr5 (137-299)||(29963308-29963470)
chr5 (140-298)||(29999618-29999776)
chr5 (137-299)||(30011328-30011490)
chr5 (55-113)||(29991500-29991555)
[»] chr8 (1 HSPs)
chr8 (138-190)||(43806047-43806099)


Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 57 - 299
Target Start/End: Original strand, 30044860 - 30045099
Alignment:
Q  57 attaatgaaaggtaaatattatatcaaatgactcataatttcgttttctcatacaaaattaactaggtgtaatttgacaaacatacctgaagatcaaaaa 156  Q
    |||||||||||||||   || |||||||||||||||||||||||||||| ||||||||||||| ||||  ||||| ||||||||||||||||||||||||    
T  30044860 attaatgaaaggtaa---ttttatcaaatgactcataatttcgttttctaatacaaaattaacaaggtagaatttaacaaacatacctgaagatcaaaaa 30044956  T
Q  157 ttcctagccaaggaacataatcagccagattaaaagctccaatcaaagccaatcctttttgaaccaaactcttcaagtcaaattgctcatacttactccg 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30044957 ttcctagccaaggaacataatcagccagattaaaagctccaatcaaagccaatccttcttgaaccaaactcttcaagtcaaattgctcatacttactccg 30045056  T
Q  257 accaaacatcaacttatacacaatatcctctattagattctct 299  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  30045057 accaaacatcaacttatacacaatatcttctattagattctct 30045099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 126 - 299
Target Start/End: Original strand, 30070754 - 30070929
Alignment:
Q  126 taatttgacaaacatacctgaa-gatcaaaaattcct-agccaaggaacataatcagccagattaaaagctccaatcaaagccaatcctttttgaaccaa 223  Q
    |||||||||||||||||||||| | ||||||| || | |||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||    
T  30070754 taatttgacaaacatacctgaaaggtcaaaaaatctttagccaaggaacataatcagccagattaaaagctccaatcaaaaccaattcttgttgaaccaa 30070853  T
Q  224 actcttcaagtcaaattgctcatacttactccgaccaaacatcaacttatacacaatatcctctattagattctct 299  Q
    | | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  30070854 atttttcaagtcaaattgctcatacttactccgtccaaacatcaacttatacacaatatcttctattagattctct 30070929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 126 - 283
Target Start/End: Complemental strand, 29991086 - 29990929
Alignment:
Q  126 taatttgacaaacatacctgaagatcaaaaattcctagccaaggaacataatcagccagattaaaagctccaatcaaagccaatcctttttgaaccaaac 225  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||      
T  29991086 taatttgacaaacttacctgaaggtcaaaaattcctagccaaggaacataatcagccagattaaaagctccaatcaaagccaatccttcttgaaccaact 29990987  T
Q  226 tcttcaagtcaaattgctcatacttactccgaccaaacatcaacttatacacaatatc 283  Q
    ||||||| |||||||||||||||||||  | ||| || |||| |||||||||||||||    
T  29990986 tcttcaaatcaaattgctcatacttacctctacccaatatcatcttatacacaatatc 29990929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 140 - 299
Target Start/End: Complemental strand, 29952362 - 29952203
Alignment:
Q  140 tacctgaagatcaaaaattcctagccaaggaacataatcagccagattaaaagctccaatcaaagccaatcctttttgaaccaaactcttcaagtcaaat 239  Q
    ||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||| |||||||||| | | ||||||||  ||||| |||||||||    
T  29952362 tacctgaagatcaaatacacctagccaaggaacataatcagccagattaaaagctccaaccaaagccaatacgtcttgaaccaccctctttaagtcaaat 29952263  T
Q  240 tgctcatacttactccgaccaaacatcaacttatacacaatatcctctattagattctct 299  Q
    || |||||||| |||||||| || |||| |||||||||||||||||| || |||||||||    
T  29952262 tgatcatacttgctccgacccaatatcatcttatacacaatatcctcaataagattctct 29952203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 140 - 299
Target Start/End: Complemental strand, 30006214 - 30006055
Alignment:
Q  140 tacctgaagatcaaaaattcctagccaaggaacataatcagccagattaaaagctccaatcaaagccaatcctttttgaaccaaactcttcaagtcaaat 239  Q
    ||||||||| |||||||  ||||||||||| |||||||||||||||||||||||||| |||||||||| | ||| | |||| ||  | |||| |||||||    
T  30006214 tacctgaaggtcaaaaacgcctagccaaggtacataatcagccagattaaaagctcccatcaaagccattgcttctagaactaacttattcatgtcaaat 30006115  T
Q  240 tgctcatacttactccgaccaaacatcaacttatacacaatatcctctattagattctct 299  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||    
T  30006114 tgctcatacttactccgaccaaacatcatcttatacacaatatcctcaataagattctct 30006055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 140 - 299
Target Start/End: Complemental strand, 29944241 - 29944082
Alignment:
Q  140 tacctgaagatcaaaaattcctagccaaggaacataatcagccagattaaaagctccaatcaaagccaatcctttttgaaccaaactcttcaagtcaaat 239  Q
    |||||||||||||||  | |||| |||||||||||||||||||| ||||||||||||||||||||||| | | | ||||||||| ||||| | |||||      
T  29944241 tacctgaagatcaaatgtgcctaaccaaggaacataatcagccatattaaaagctccaatcaaagccattacgtcttgaaccaacctctttaggtcaata 29944142  T
Q  240 tgctcatacttactccgaccaaacatcaacttatacacaatatcctctattagattctct 299  Q
    || ||||||||||||||||| |||| || ||||||||||||||||||||| | |||||||    
T  29944141 tgatcatacttactccgacccaacaccatcttatacacaatatcctctataacattctct 29944082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 137 - 299
Target Start/End: Complemental strand, 29963470 - 29963308
Alignment:
Q  137 acatacctgaagatcaaaaattcctagccaaggaacataatcagccagattaaaagctccaatcaaagccaatcctttttgaaccaaactcttcaagtca 236  Q
    |||||||||||||||||||   |||| ||||| ||||||||||||||||||||||||||||| || ||||| ||||| |||||||||  |||| || |||    
T  29963470 acatacctgaagatcaaaaggacctaaccaagaaacataatcagccagattaaaagctccaagcatagccattccttcttgaaccaacttctttaaatca 29963371  T
Q  237 aattgctcatacttactccgaccaaacatcaacttatacacaatatcctctattagattctct 299  Q
    |||||||||||||||| || ||| || |||| ||||||||||||||| || || |||||||||    
T  29963370 aattgctcatacttacccctacccaatatcatcttatacacaatatcttcaataagattctct 29963308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 140 - 298
Target Start/End: Complemental strand, 29999776 - 29999618
Alignment:
Q  140 tacctgaagatcaaaaattcctagccaaggaacataatcagccagattaaaagctccaatcaaagccaatcctttttgaaccaaactcttcaagtcaaat 239  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||  ||||| | || || ||   ||||||||||||||    
T  29999776 tacctgaaggtcaaaaatgcctagccaaggaacataatcagccagattaaaagctcccatcaaagttaatccatctttaatcatcttcttcaagtcaaat 29999677  T
Q  240 tgctcatacttactccgaccaaacatcaacttatacacaatatcctctattagattctc 298  Q
    |||||||||||||  | ||| || |||| |||||||||||||||||| || ||||||||    
T  29999676 tgctcatacttacctctacccaatatcatcttatacacaatatcctcaataagattctc 29999618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 137 - 299
Target Start/End: Original strand, 30011328 - 30011490
Alignment:
Q  137 acatacctgaagatcaaaaattcctagccaaggaacataatcagccagattaaaagctccaatcaaagccaatcctttttgaaccaaactcttcaagtca 236  Q
    |||||||||||||||||||   |||| ||||| ||||||||||||||||||||||||||||| || ||||| ||||| |||||||||  |||| || |||    
T  30011328 acatacctgaagatcaaaaggacctaaccaagaaacataatcagccagattaaaagctccaagcatagccattccttcttgaaccaacttctttaaatca 30011427  T
Q  237 aattgctcatacttactccgaccaaacatcaacttatacacaatatcctctattagattctct 299  Q
    |||||||||||||||| || ||| || |||| ||||||||||||||| || || |||||||||    
T  30011428 aattgctcatacttacccctacccaatatcatcttatacacaatatcttcaataagattctct 30011490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 29991555 - 29991500
Alignment:
Q  55 tcattaatgaaaggtaaatattatatcaaatgactcataatttcgttttctcatacaaa 113  Q
    |||||||| ||||||||   || ||| ||||||||||||||||||||||||||||||||    
T  29991555 tcattaataaaaggtaa---ttttataaaatgactcataatttcgttttctcatacaaa 29991500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 43806099 - 43806047
Alignment:
Q  138 catacctgaagatcaaaaattcctagccaaggaacataatcagccagattaaa 190  Q
    ||||||||||||||||||| ||| ||  |||||||||||||||| ||||||||    
T  43806099 catacctgaagatcaaaaactccaagaaaaggaacataatcagcaagattaaa 43806047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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