View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11862_low_12 (Length: 246)
Name: NF11862_low_12
Description: NF11862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11862_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 35675875 - 35676116
Alignment:
| Q |
1 |
taatcaaattatccttagtaggtatcctattgttaacgagttttcacgcaaatacagaaagactttgagaggtactgatttattccaaataatatcctca |
100 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35675875 |
taatcaaattatccttggtaggtattctattgttaacgagttttcacgcaaatacagaaagactttgagaggtacttatttattccaaataatatcctca |
35675974 |
T |
|
| Q |
101 |
ggtgtaatatcacaaccttcattaaagttttcctcctcatccaccatctga--gtatcatcaacaaactcagatccttatgagctagcatcttcattctc |
198 |
Q |
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|
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35675975 |
ggtgtaatatcacaaccttcattaaagttt---tcctcatccaccatctgatcgtatcatcaacaaactcagatccttatgagctagcatcttcattctc |
35676071 |
T |
|
| Q |
199 |
aatgtttctattcagtgaattatcaatgtcatcatcagcattctt |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35676072 |
aatgtttctattcagtgaattatcaatgtcatcatcagcattctt |
35676116 |
T |
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