View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11862_low_16 (Length: 240)
Name: NF11862_low_16
Description: NF11862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11862_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31998477 - 31998699
Alignment:
| Q |
1 |
gtgacaaaggctccagctttgccggacattatgggactgcgttggtgtctccggtggatgtctacacaaaatatgccaaatgtttgtgaactgcgtgctt |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31998477 |
gtgacaaaggctccagttttgccggacattatgggactgcgttggtgtctccggtggatgtctacacaaaatatgccaaatgtttgtgaactgcgtgctt |
31998576 |
T |
|
| Q |
101 |
gggaaaactaagctggagtacaaggatattgtcgtgtctgactgtcatgaattgttgttcagtatgtctaatgttagtttaatttatgttaagagatgta |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31998577 |
gggaaaactaagctggagtacaaggatattgtcgtgtttgactgtcatgaattgttgttcagtatgtctaatgttagtttaatttatgttaagtgatgta |
31998676 |
T |
|
| Q |
201 |
acaatagagttgctcatagtttt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
31998677 |
acaatagagttgctcatagtttt |
31998699 |
T |
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