View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11862_low_3 (Length: 544)
Name: NF11862_low_3
Description: NF11862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11862_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Original strand, 86990 - 87519
Alignment:
| Q |
1 |
taaaaataataattgattataaatgtgattggaggtaataactcgttaattttcattttgtggtaagaaacatctcgcttttataaaatatatatggcaa |
100 |
Q |
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| T |
86990 |
taaaaataataattgattataaatgtgatcggaggtaataactcgttaattttcattttgtggtaagaaacatttcgcttttataaaatatatatggcaa |
87089 |
T |
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| Q |
101 |
atgctaacatgtaccccagagacacatattaaggagctcaacatagaaatatttatcttaaaaattacattcatcaattatttaaaaggcaaaatattgt |
200 |
Q |
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| T |
87090 |
atgctaacatgtatcccagagacacatattaaggagctcaacatagaaatatttatcttaaaaattacatgcatcaattatttaaaaggcaaaatattgt |
87189 |
T |
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| Q |
201 |
attttcaatgcaaaatttctatttttgaaaaccttaacatgtatatttaggacacaagttaacaagatctgtttatattaaaggtgcagagcagctccgg |
300 |
Q |
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| T |
87190 |
attttcaatgcaaaacttctatttttaaaaaccttaacatgtatatttaggacacaagttaacaagacctgtttatattaaaggtgcagggcagctccgg |
87289 |
T |
|
| Q |
301 |
ccatgacagtattagcagctgggctgaatttgtttttgctgctgtccgggtttggagctgtttagctgctgctgtgcttttggttcgtgcctgctggccg |
400 |
Q |
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| T |
87290 |
ccatgacagtattagcagctgggctgaatttgtttttgctgctgtccgggtttggagctgtttagctgctgctgtgcttttggttcgtgcctgctggccg |
87389 |
T |
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| Q |
401 |
gctgcagaatttttctgctaggttctgctactgtatgggacgctgttttagcagctataggttcctgctg--nnnnnnnnggtggttttgcttgtttcgg |
498 |
Q |
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| T |
87390 |
gctgcagaatttttctgctaggttctgctactgtatgggacgctgttttagcagctataggttcctgctgttttttttttggtggttttgcttgtttcgg |
87489 |
T |
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| Q |
499 |
tgttatgattgtaaggcaggggtatgcgtg |
528 |
Q |
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| T |
87490 |
tgttatggttgtaaggcaggggtatgcgtg |
87519 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 264
Target Start/End: Complemental strand, 7014603 - 7014534
Alignment:
| Q |
195 |
tattgtattttcaatgcaaaatttctatttttgaaaaccttaacatgtatatttaggacacaagttaaca |
264 |
Q |
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| T |
7014603 |
tattgtattttcaatgcacaacttctatttttaaaatctttaacatgtgtgttaaagacagaagttaaca |
7014534 |
T |
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