View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11862_low_5 (Length: 489)
Name: NF11862_low_5
Description: NF11862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11862_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 21 - 469
Target Start/End: Complemental strand, 3815714 - 3815268
Alignment:
| Q |
21 |
cgagttcaagtaccctaaatttatgaaaagtatagaatatatcttattatttattggcataccannnnnnnnatgcttaactatttttatccaacaaaac |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3815714 |
cgagttcaagtaccctaaatttatgaaaagtatagaatgt--cttattatttattggcataccattttttttatgcttaactatttttatccaacaaaac |
3815617 |
T |
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| Q |
121 |
tgtaaggatgtgtttgatttacaaatcagtaagtatcgaatataacaatacataactgtatttgaaaactttttatacgccatattgtttgatggttgat |
220 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3815616 |
tgtaaggatgtgtttgatttacaaatcagtaagtaccgaatataacaatacataattatatttgaaaactttttatacgccatattgtttgatggttgat |
3815517 |
T |
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| Q |
221 |
gcataagacaaataattatcgtactacatcttatttgatatgtcttttcacataagaaagtaatatacttttcatacccttttatataaagacaagggag |
320 |
Q |
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| T |
3815516 |
gcataagacaaataattatcgaactacaccttatttgatatgtcttttcacataagaaagtattatacttttcatacccttttatataaagacaagggag |
3815417 |
T |
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| Q |
321 |
gagaaaaataaaagaatatggtaaatagtaaaaaacactcttggaattgtaaatgattgtgaatactcccctcaaattataattaacatactattttaaa |
420 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3815416 |
gagaaaaataaaagaatatggtaaatagtaaaaaaccctcttggaattgtaaatgattgtgaatactcccctcaaattataattaacatactattttaaa |
3815317 |
T |
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| Q |
421 |
aagtgcttatatgattgtttaacattgaagtgagatgttcaaaatgagc |
469 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3815316 |
aagtgcttatatgattgtttaacattgaagtgagatgttcaaaatgagc |
3815268 |
T |
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