View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11862_low_8 (Length: 422)
Name: NF11862_low_8
Description: NF11862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11862_low_8 |
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| [»] scaffold0001 (1 HSPs) |
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| [»] scaffold0023 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 60 - 404
Target Start/End: Complemental strand, 33865822 - 33865478
Alignment:
| Q |
60 |
ctcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggttaaatgggaaatataataattttgtgactccaatagtgacggtttc |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| |
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| T |
33865822 |
ctcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggttgaatgggaaatataataattttgtgacaccaatagtaactgtttc |
33865723 |
T |
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| Q |
160 |
aacaaatgatggtactggtgcaaaagatagtgaagtagatactattctaccaattaatgatgatggagattgtgctgcaaaaccatatcttgaaaattca |
259 |
Q |
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| T |
33865722 |
aacaaatgatggtaatgttgcaaaagatagtgaagtagatactattctaccaattaatggtgatggtgatagtgctgcacaaccatatcttgaaaatcca |
33865623 |
T |
|
| Q |
260 |
acactgtcttccatgtggtgggagagtttgttgaacgtgagcaatgacaaaattggatcatgctctttactattaccagaggaatattccaaattaaatg |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33865622 |
acactgtcttccatgtggtgggagagtttgttgaacgtgagcaatgacaaaattggatcatgctctttactattaccagaggaatattccaaattaaatg |
33865523 |
T |
|
| Q |
360 |
ttgagaactttcttgctgaaggacccagtactgtcggtgatttct |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33865522 |
ttgagaactttcttgctgaaggacccagtactgtcggtgatttct |
33865478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 33762702 - 33762650
Alignment:
| Q |
62 |
catgaagttattaaacctcaacctcgaactttttcatctcattcaccatggtt |
114 |
Q |
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| T |
33762702 |
catgaagttattaaacctcaacctcgaattttttcaactcattcaccatggtt |
33762650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 33734239 - 33734160
Alignment:
| Q |
60 |
ctcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggttaaatgggaaatataataattttgtg |
139 |
Q |
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||||||||||||||||||| |||||||||| ||||||| |||||||| ||||||| ||| ||||| || |||||||||| |
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| T |
33734239 |
ctcatgaagttattaaaccccaacctcgaattttttcaactcattcatcatggttgaataggaaacatgttaattttgtg |
33734160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 33679748 - 33679694
Alignment:
| Q |
60 |
ctcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggtt |
114 |
Q |
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||||||||||||| || |||| |||||||||||||||| ||||||||| |||||| |
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| T |
33679748 |
ctcatgaagttatcaagcctcgacctcgaactttttcaactcattcactatggtt |
33679694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 33698465 - 33698411
Alignment:
| Q |
60 |
ctcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggtt |
114 |
Q |
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|
||||||||||||| || |||| |||||||||||||||| ||||||||| |||||| |
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|
| T |
33698465 |
ctcatgaagttatcaagcctcgacctcgaactttttcaactcattcactatggtt |
33698411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 33748711 - 33748641
Alignment:
| Q |
60 |
ctcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggttaaatgggaaatataat |
130 |
Q |
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||||||||||||||||||||| || |||||||||| |||||||||| ||||| ||||||||| ||||| |
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| T |
33748711 |
ctcatgaagttattaaacctcgtccattaactttttcaactcattcaccttggttgaatgggaaacataat |
33748641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 162
Target Start/End: Complemental strand, 33904333 - 33904232
Alignment:
| Q |
61 |
tcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggttaaatgggaaatataataattttgtgactccaatagtgacggtttca |
160 |
Q |
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||||||| ||||||||||| ||||||||||||| ||| ||||| |||| | ||| || ||||| |||||| | |||||| ||||| ||| |||||||| |
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| T |
33904333 |
tcatgaaattattaaacctaaacctcgaactttctcaactcatccaccttcgttgaactggaaacataatattaatgtgacaccaattgtggcggtttca |
33904234 |
T |
|
| Q |
161 |
ac |
162 |
Q |
| |
|
|| |
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|
| T |
33904233 |
ac |
33904232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 33834831 - 33834761
Alignment:
| Q |
60 |
ctcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggttaaatgggaaatataat |
130 |
Q |
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||||||||||||| ||||||| || |||||||||| |||||||||| ||||| ||||||||| ||||| |
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| T |
33834831 |
ctcatgaagttatcaaacctcgtccattaactttttcaactcattcaccttggttgaatgggaaacataat |
33834761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 148718 - 148648
Alignment:
| Q |
61 |
tcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggttaaatgggaaatataata |
131 |
Q |
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|
||||||| |||||| |||||||||||||||||| ||| |||||||||| | ||| ||||||||| |||||| |
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| T |
148718 |
tcatgaaattattagacctcaacctcgaactttctcaactcattcaccttcgttgaatgggaaacataata |
148648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 114351 - 114431
Alignment:
| Q |
61 |
tcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggttaaatgggaaatataataattttgtgac |
141 |
Q |
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|||||| ||||||||||||||||||| |||||||||| || |||| || ||||| ||| ||||| || || ||||||||| |
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| T |
114351 |
tcatgatgttattaaacctcaacctcaaactttttcacctgattctccttggtttaataggaaacattgtagttttgtgac |
114431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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