View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11862_low_9 (Length: 406)
Name: NF11862_low_9
Description: NF11862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11862_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 16 - 390
Target Start/End: Original strand, 28260408 - 28260785
Alignment:
| Q |
16 |
gaagagatctgctatgatgttcgattttcgatcaactggtcaacctcttgtcgatgattgggactgtcttaaaatatttgtaagaaaaataacacaaaat |
115 |
Q |
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| T |
28260408 |
gaagagctctgctatgatgtttgattttcggtcaattgaccaacctcttgtcgatgattggaactgtcttaaaatacttgtaagaaaaataacacaaaat |
28260507 |
T |
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| Q |
116 |
attattagtattgccactttcttgaattttaag---ttagacatcaattgttttgaatacatgcattgtttaacatatatgtgatggtattatacatgtt |
212 |
Q |
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|||||||||||||||||||||| || ||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
28260508 |
attattagtattgccactttctcaaacactaacccatttatgatcaattgttttgaatacatgtattgtttaacatatatgtgatggtattatacatgtt |
28260607 |
T |
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| Q |
213 |
acacattaagtcaccatgtttacgtaatattttatgcagtttaaaacttatgagagtcattgtggtatcttatcaacctatggaaggaaatactcaaaag |
312 |
Q |
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| T |
28260608 |
acacattaagtcaccatgtttacgtaatattttatgcagtttaaaacttatgagagtcagtgtggtatcttatcaacctatggaaggaaatactcaaaag |
28260707 |
T |
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| Q |
313 |
cctttgcttatatgtgtaatattggcatttcagagaagcaaatgattgcagtagtatctcaagtttgtccagggatat |
390 |
Q |
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| T |
28260708 |
cctttgcttatatgtgtaatattggcatttcagagaagcaaatgattgcagtagtatctcaagtttgtccagggatat |
28260785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 158 - 380
Target Start/End: Original strand, 29929557 - 29929783
Alignment:
| Q |
158 |
aattgttttgaatacatgcattgtttaacatatatgtgatggtattatacatgtt-acacattaagtcaccatgtttacgtaatattttatgcagtttaa |
256 |
Q |
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| T |
29929557 |
aattgctttaaatacatgcattgtttaacatatatatgatggtattatacatgtttacacattaagtcaccaagtttacataatattttatgcagtttaa |
29929656 |
T |
|
| Q |
257 |
aacttatgagagtcattgtggtatc---ttatcaacctatggaaggaaatactcaaaagcctttgcttatatgtgtaatattggcatttcagagaagcaa |
353 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||| || |||||| |
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| T |
29929657 |
aacttatgagagtcattgtggtatcttattatcaacctatggaaggaaatactcaagagtctttgcttatatgtgcaatattggcatttttgaaaagcaa |
29929756 |
T |
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| Q |
354 |
atgattgcagtagtatctcaagtttgt |
380 |
Q |
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| T |
29929757 |
acgatttcagcagtatctcaagtttgt |
29929783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 28 - 152
Target Start/End: Original strand, 29929386 - 29929510
Alignment:
| Q |
28 |
tatgatgttcgattttcgatcaactggtcaacctcttgtcgatgattgggactgtcttaaaatatttgtaagaaaaataacacaaaatattattagtatt |
127 |
Q |
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| T |
29929386 |
tatgatgtctgatttacgttcagctggtcaacctctaatcgatgattggaactgtcttaaaatacttgtaagaagaataacacaaaatattattagtatt |
29929485 |
T |
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| Q |
128 |
gccactttcttgaattttaagttag |
152 |
Q |
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|||||| |||||||||||||||||| |
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| T |
29929486 |
gccactatcttgaattttaagttag |
29929510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 227 - 333
Target Start/End: Original strand, 11329102 - 11329208
Alignment:
| Q |
227 |
catgtttacgtaatattttatgcagtttaaaacttatgagagtcattgtggtatcttatcaacctatggaaggaaatactcaaaagcctttgcttatatg |
326 |
Q |
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||||||| | ||||||||||||||| | ||||||||||||||||| ||||||| | |||||| ||||||||||||||||| | |||||||||| ||||| |
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| T |
11329102 |
catgttttcttaatattttatgcaggtaaaaacttatgagagtcactgtggtaccctatcaagctatggaaggaaatacttgagagcctttgctaatatg |
11329201 |
T |
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| Q |
327 |
tgtaata |
333 |
Q |
| |
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||||||| |
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| T |
11329202 |
tgtaata |
11329208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 255 - 380
Target Start/End: Original strand, 470831 - 470956
Alignment:
| Q |
255 |
aaaacttatgagagtcattgtggtatcttatcaacctatggaaggaaatactcaaaagcctttgcttatatgtgtaatattggcatttcagagaagcaaa |
354 |
Q |
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||||||||||| |||||||||||||||||||||| |||||| ||||||||||| || ||||||| | ||||| || | ||||||| |||||||||| |
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| T |
470831 |
aaaacttatgaacgtcattgtggtatcttatcaacacatggaatgaaatactcaagagtctttgctaacatgtgcaacgtcggcatttatgagaagcaaa |
470930 |
T |
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| Q |
355 |
tgattgcagtagtatctcaagtttgt |
380 |
Q |
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|||||||| | |||||||||||||| |
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| T |
470931 |
tgattgcaacaatatctcaagtttgt |
470956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 2288335 - 2288291
Alignment:
| Q |
60 |
ctcttgtcgatgattgggactgtcttaaaatatttgtaagaaaaa |
104 |
Q |
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||||||| ||||||||||| ||||||||||| |||||||||||| |
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| T |
2288335 |
ctcttgtggatgattgggattgtcttaaaatgcttgtaagaaaaa |
2288291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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