View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11863_low_1 (Length: 579)
Name: NF11863_low_1
Description: NF11863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11863_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 3809717 - 3809460
Alignment:
| Q |
11 |
gagatggacatcaaaaggtagatcgttttgacaatggaacttgacgcattaactccaaatctaactgaacacgtttccttccacagcgtgttttcttatg |
110 |
Q |
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| T |
3809717 |
gagatagagatcgaaaggtagatcgttttgacaatggaacttgacgcattaactccaaatctaactgaacacatttccttccacatcgttttttcttatg |
3809618 |
T |
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| Q |
111 |
ataagcattaccagtctccattacttgtttccatatacgaaaaatgatacttctatgaacatcgtatagtaaagctactcgtgatattacccctggactg |
210 |
Q |
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| T |
3809617 |
ataagcattaccagtctccattacttgtttccatatacgataaatgatacttctatgaacatcgtatagtaaagctgctcgggatattacccctggactg |
3809518 |
T |
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| Q |
211 |
tgtagttttccatgtccgtcgctcaagctcaacaacaaatgagatatggcctttctat |
268 |
Q |
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| T |
3809517 |
tgtagttttccatgtccgtcgctcaagctcaacaacaaatgagatatggcctttctat |
3809460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 271 - 530
Target Start/End: Complemental strand, 3809412 - 3809152
Alignment:
| Q |
271 |
tcattcttcagaaaacgacgttttttggaagttccttcagttgtcaacgagtctgcatgacaagattaaagggaaaaaa-tatcgaaattcaattgatat |
369 |
Q |
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| T |
3809412 |
tcattcttcagaaaacgacgttttttggaagttccttcagttgtcaacgagtctgcatgacaagattatagggaaaaaaatatcgaaattcaattgatat |
3809313 |
T |
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| Q |
370 |
--atcaactaaaaataacagggcacaaaaaagggaagaatatgtgtcattctactttaaacatgtacctgtagctatatggaattgttgaaagtcatttg |
467 |
Q |
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| T |
3809312 |
ttatcaactaaaaataacaag-cacaaaaaagggaagaatatgtgtcattctactttaaacatgtacatgtagctatatggaattgttgaaagtcatttg |
3809214 |
T |
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| Q |
468 |
cttcagggaatggcacatactgatcatcttcaactttatgcataatgtgtcattcaagcaaat |
530 |
Q |
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| T |
3809213 |
ctttagggaatggcacatactgatcatcttcaactttatgcat-atgtgtcattcaagcaaat |
3809152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 242
Target Start/End: Complemental strand, 3809456 - 3809421
Alignment:
| Q |
207 |
actgtgtagttttccatgtccgtcgctcaagctcaa |
242 |
Q |
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| T |
3809456 |
actgtgtagttttccatgtccatcgctcaagctcaa |
3809421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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