View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11863_low_2 (Length: 498)
Name: NF11863_low_2
Description: NF11863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11863_low_2 |
 | |
|
| [»] scaffold1526 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] scaffold0016 (1 HSPs) |
| |
|
| [»] scaffold0642 (2 HSPs) |
| | |
|
| [»] scaffold0105 (2 HSPs) |
| | |
|
| [»] scaffold0345 (2 HSPs) |
| | |
|
| [»] chr4 (6 HSPs) |
| |
|
Alignment Details
Target: scaffold1526 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: scaffold1526
Description:
Target: scaffold1526; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 101 - 606
Alignment:
| Q |
1 |
ttaaagataaaagaagaatatatgaagtgatctaaagaaaaaaccaaccaaaagcagaaataacctaaatcatgtaagaaaatggcagaacaccgatgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
101 |
ttaaagataaaagaagaatatatgaagtgatgtaaagaaaaaaacaaccaaaagcagaaataacctaaatcatgtaagaaaatggcagaacaccgatgtg |
200 |
T |
|
| Q |
101 |
gtgagaagaatgactcaaaaagagaagaagtagcttcacaatgatatggcagaacacctagaataagtagcttaacagtagcatacacagacgaaagatg |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
201 |
gtgagaagaatgactcaaacagagaagaagtagcttcaaagtgatatggcagaacacctagaagaagtagcttaacagtagcatacacagacgaaagatg |
300 |
T |
|
| Q |
201 |
acatttacatataatccattgaaatacacattggatgttt-----gnnnnnnnnntcaaggaaaacaatccataacttgaaatgaattgattgacatggc |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
301 |
acatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaatcaaggaaaacaatccataacttgaaatgaattaattgacatggc |
400 |
T |
|
| Q |
296 |
tcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaattgagttttgtaaacat--nnnnnnnnnnnnnnggtct |
393 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
401 |
tcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaattgagttttgtaaacataaaaaagaaaaaaaaaggtgc |
500 |
T |
|
| Q |
394 |
gcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa-acatatgat |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
501 |
gcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaacacatatgat |
600 |
T |
|
| Q |
493 |
taaatc |
498 |
Q |
| |
|
|||||| |
|
|
| T |
601 |
taaatc |
606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Complemental strand, 3379411 - 3378923
Alignment:
| Q |
1 |
ttaaagataaaagaagaatatatgaagtgatctaaagaaaaaaccaaccaaaagcagaaataacctaaatcatgtaagaaaatggcagaacaccgatgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3379411 |
ttaaagataaaagaagaatatatgaagtgatgtaaagaaaaaaacaaccaaaagcagaaataacctaaatcatgtaagaaaatggcagaacaccgatgtg |
3379312 |
T |
|
| Q |
101 |
gtgagaagaatgactcaaaaagagaagaagtagcttcacaatgatatggcagaacacctagaataagtagcttaacagtagcatacacagacgaaagatg |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3379311 |
gtgagaagaatgactcaaacagagaagaagtagcttcacagtgatatggcagaacacctagaagaagtagcttaacagtagcatacacagacgaaagatg |
3379212 |
T |
|
| Q |
201 |
acatttacatataatccattgaaatacacattggatgttt-----gnnnnnnnnntcaaggaaaacaatccataacttgaaatgaattgattgacatggc |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3379211 |
acatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaatcaaggaaaacaatccataacttgaaatgaattaattgacatggc |
3379112 |
T |
|
| Q |
296 |
tcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaattgagttttgtaaaca-tnnnnnnnnnnnnnnggtctg |
394 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| || |
|
|
| T |
3379111 |
tcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaattgagttttgtaaacattaaaaagaaaaaaaaggtgtg |
3379012 |
T |
|
| Q |
395 |
catgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3379011 |
catgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaataataaaa |
3378923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Complemental strand, 44496680 - 44496173
Alignment:
| Q |
1 |
ttaaagataaaagaagaatatatgaagtgatctaaagaaaaaac-caaccaaaagcagaaataacctaaatcatgtaagaaaatggcagaacaccgatgt |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44496680 |
ttaaagataaaagaagaatatatgaagtgatgtaaagaaaaaaaacaaccaaaagcataaataacctaaatcatgtaagaaaatggcagaacaccgatgt |
44496581 |
T |
|
| Q |
100 |
ggtgagaagaatgactcaaaaagagaagaagtagcttcacaatgatatggcagaacacctagaataagtagcttaacagtagcatacacagacgaaagat |
199 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44496580 |
ggtgagaagaatgactcaaacagataagaagtagcttcacagtgatatggcagaacacctagaagaagtagcttaacagtagcatacacagacgaaagat |
44496481 |
T |
|
| Q |
200 |
gacatttacatataatccattgaaatacacattggatgtttg------nnnnnnnnntcaaggaaaacaatccataacttgaaatgaattgattgacatg |
293 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
44496480 |
gacatttatatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaattcaaggaaaacaatccataaattgaaatgaattaattgacatg |
44496381 |
T |
|
| Q |
294 |
gctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaattgagttttgtaaacat--nnnnnnnnnnnnnnggt |
391 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44496380 |
gctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaattgagttttgtaaacataaaaaagaaaaaaaaaggt |
44496281 |
T |
|
| Q |
392 |
ctgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa-acatatg |
490 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44496280 |
gcgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaacacatatg |
44496181 |
T |
|
| Q |
491 |
attaaatc |
498 |
Q |
| |
|
|||||||| |
|
|
| T |
44496180 |
attaaatc |
44496173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 52785 - 53292
Alignment:
| Q |
1 |
ttaaagataaaagaagaatatatgaagtgatctaaagaaaaaaccaaccaaaagcagaaataacctaaatcatgtaagaaaatggcagaacaccgatgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52785 |
ttaaagataaaagaagaatatatgaagtgatgtaaagaaaaaaacaaccaaaagcagaaataacctaaatcatgtaagaaaatggcagaacaccgatgtg |
52884 |
T |
|
| Q |
101 |
gtgagaagaatgactcaaaaagagaagaagtagcttcacaatgatatggcagaacacctagaataagtagcttaacagtagcatacacagacgaaagatg |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
52885 |
gtgagaagaatgactcaaacagagaagaagtagcttcatagtgatatggcagaacacctagaagaagtagcttaacagtagtatacacagacgaaagatg |
52984 |
T |
|
| Q |
201 |
acatttacatataatccattgaaatacacattggatgtttg----nnnnnnnnntcaaggaaaacaatccataacttgaaatgaattgattgacatggct |
296 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
52985 |
acatttacatataatccattaaaatacacattggatgtttgaagaaaaaaaaaatcaaggaaaacaatccataacttgaaatgaattaattgacatggct |
53084 |
T |
|
| Q |
297 |
cttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaattgagttttgtaaacat-----nnnnnnnnnnnnnnggt |
391 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
53085 |
cttgcatactaacaatgcccttcacagtacatataacttaatcgttacacaaccgaggaaattgagttttgtaaacataaaaaagaaaaagaaaaaaggt |
53184 |
T |
|
| Q |
392 |
ctgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa-acatatg |
490 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
53185 |
gtgcatgaaggtgcaaagtccaaattttgctgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaatcaaagaataaaacacatatg |
53284 |
T |
|
| Q |
491 |
attaaatc |
498 |
Q |
| |
|
|||||||| |
|
|
| T |
53285 |
attaaatc |
53292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 5194 - 4832
Alignment:
| Q |
1 |
ttaaagataaaagaagaatatatgaagtgatctaaagaaaaaaccaaccaaaagcagaaataacctaaatcatgtaagaaaatggcagaacaccgatgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5194 |
ttaaagataaaagaagaatatatgaagtgatgtaaagaaaaaaacaaccaaaagcagaaataacctaaatcatgtaagaaaatggcagaacaccgatgtg |
5095 |
T |
|
| Q |
101 |
gtgagaagaatgactcaaaaagagaagaagtagcttcacaatgatatggcagaacacctagaataagtagcttaacagtagcatacacagacgaaagatg |
200 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5094 |
gtgagaagaatgactcaaacagataagaagtagcttcacagtgatatggcagaacacctagaagaagtagcttaacagtagcatacacagacgaaagatg |
4995 |
T |
|
| Q |
201 |
acatttacatataatccattgaaatacacattggatgtttg------nnnnnnnnntcaaggaaaacaatccataacttgaaatgaattgattgacatgg |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
4994 |
acatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaaatcaaggaaaacaatccataacatgaaatgaattaattgacatgg |
4895 |
T |
|
| Q |
295 |
ctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaa |
357 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4894 |
ctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaa |
4832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 393 - 483
Target Start/End: Complemental strand, 4821 - 4731
Alignment:
| Q |
393 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4821 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa |
4731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 23874 - 24236
Alignment:
| Q |
1 |
ttaaagataaaagaagaatatatgaagtgatctaaagaaaaaaccaaccaaaagcagaaataacctaaatcatgtaagaaaatggcagaacaccgatgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23874 |
ttaaagataaaagaagaatatatgaagtgatgtaaagaaaaaaacaaccaaaagcagaaataacctaaatcatgtaagaaaatggcagaacaccgatgtg |
23973 |
T |
|
| Q |
101 |
gtgagaagaatgactcaaaaagagaagaagtagcttcacaatgatatggcagaacacctagaataagtagcttaacagtagcatacacagacgaaagatg |
200 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23974 |
gtgagaagaatgactcaaacagataagaagtagcttcacagtgatatggcagaacacctagaagaagtagcttaacagtagcatacacagacgaaagatg |
24073 |
T |
|
| Q |
201 |
acatttacatataatccattgaaatacacattggatgtttg------nnnnnnnnntcaaggaaaacaatccataacttgaaatgaattgattgacatgg |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
24074 |
acatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaaatcaaggaaaacaatccataacatgaaatgaattaattgacatgg |
24173 |
T |
|
| Q |
295 |
ctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaa |
357 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24174 |
ctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaa |
24236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 393 - 483
Target Start/End: Original strand, 24248 - 24338
Alignment:
| Q |
393 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24248 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa |
24338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 15107 - 14745
Alignment:
| Q |
1 |
ttaaagataaaagaagaatatatgaagtgatctaaagaaaaaaccaaccaaaagcagaaataacctaaatcatgtaagaaaatggcagaacaccgatgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15107 |
ttaaagataaaagaagaatatatgaagtgatgtaaagaaaaaaacaaccaaaagcagaaataacctaaatcatgtaagaaaatggcagaacaccgatgtg |
15008 |
T |
|
| Q |
101 |
gtgagaagaatgactcaaaaagagaagaagtagcttcacaatgatatggcagaacacctagaataagtagcttaacagtagcatacacagacgaaagatg |
200 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15007 |
gtgagaagaatgactcaaacagataagaagtagcttcacagtgatatggcagaacacctagaagaagtagcttaacagtagcatacacagacgaaagatg |
14908 |
T |
|
| Q |
201 |
acatttacatataatccattgaaatacacattggatgtttg------nnnnnnnnntcaaggaaaacaatccataacttgaaatgaattgattgacatgg |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
14907 |
acatttacatataatccattgaaatacacattggatgtttgaaaagaaaaaaaaatacaaggaaaacaatccataacatgaaatgaattaattgacatgg |
14808 |
T |
|
| Q |
295 |
ctcttgcatactaacaatgcccttcatagtacatataccttaattgttacacaaccgaggaaa |
357 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14807 |
ctcttgcatactaacaatgcccttcacagtacatataccttaatcgttacacaaccgaggaaa |
14745 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 393 - 483
Target Start/End: Complemental strand, 14733 - 14643
Alignment:
| Q |
393 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14733 |
tgcatgaagttgcaaagtccaaattttgttgaagggtaatcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa |
14643 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 24 - 215
Target Start/End: Original strand, 36931651 - 36931843
Alignment:
| Q |
24 |
gaagtgatctaaagaaaaaaccaaccaaaagcagaaataacctaaatcatgtaagaaaatggcagaacaccgatgtggtgagaagaatgactcaaaaaga |
123 |
Q |
| |
|
||||| ||||||||||||||| |||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || || | | |
|
|
| T |
36931651 |
gaagtcatctaaagaaaaaac-aacctaaagcataaatcacctaaatcatgtaagaaaatggcagaacaccgatgtggtgagaagaatgaatcgaacaaa |
36931749 |
T |
|
| Q |
124 |
gaagaagtagcttcacaatgatatggcagaacacctagaataagtagcttaacagtagcat--acacagacgaaagatgacatttacatataat |
215 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||||| | |||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
36931750 |
gaagaagtagcttcacggtgatatggcagaacacctagaagaagtagcttcatagtagcatacacacagacaaaagatgacatttacatgtaat |
36931843 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 432 - 498
Target Start/End: Original strand, 28335593 - 28335660
Alignment:
| Q |
432 |
tcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa-acatatgattaaatc |
498 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| | |||||||||||||||| |||| |||||||||| |
|
|
| T |
28335593 |
tcaaattaggttagcaagactcataaaatgtgaggaaaagcaaagaataaaacacatgtgattaaatc |
28335660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 432 - 498
Target Start/End: Original strand, 44787548 - 44787615
Alignment:
| Q |
432 |
tcaaattaggttagtaagactcataaaatgtgaaggaaagcaaagaataaaa-acatatgattaaatc |
498 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| | |||||||||||||||| |||| |||||||||| |
|
|
| T |
44787548 |
tcaaattaggttagcaagactcataaaatgtgaggaaaagcaaagaataaaacacatgtgattaaatc |
44787615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 142 - 320
Target Start/End: Original strand, 28335275 - 28335452
Alignment:
| Q |
142 |
tgatatggcagaacacctagaataagtagcttaacagtagcatacac--agacgaaagatgacatttacatataatccattgaaatacacattggatgtt |
239 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || |||||||| |||||||||||| ||||| || |||||||||||| ||| |||| ||||| |
|
|
| T |
28335275 |
tgatatggcagaacacctagaataagaagcttcac----gcatacacatagacgaaagatgcaatttaaatgtaatccattgaaccacaaattgaatgtt |
28335370 |
T |
|
| Q |
240 |
tg--nnnnnnnnntcaaggaaaacaatccataacttgaaatgaattgattgacatggctcttgcatactaacaatgcccttca |
320 |
Q |
| |
|
|| |||||||||| | | ||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
28335371 |
tggaaaaaaaatatcaaggaaaaaagtaaataacttaaaatgaatt-attggcatggctctcgcatactaacaatgcccttca |
28335452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 142 - 320
Target Start/End: Original strand, 44787230 - 44787407
Alignment:
| Q |
142 |
tgatatggcagaacacctagaataagtagcttaacagtagcatacac--agacgaaagatgacatttacatataatccattgaaatacacattggatgtt |
239 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || |||||||| |||||||||||| ||||| || |||||||||||| ||| |||| ||||| |
|
|
| T |
44787230 |
tgatatggcagaacacctagaataagaagcttcac----gcatacacatagacgaaagatgcaatttaaatgtaatccattgaaccacaaattgaatgtt |
44787325 |
T |
|
| Q |
240 |
tg--nnnnnnnnntcaaggaaaacaatccataacttgaaatgaattgattgacatggctcttgcatactaacaatgcccttca |
320 |
Q |
| |
|
|| |||||||||| | | ||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
44787326 |
tggaaaaaaaatatcaaggaaaaaagtaaataacttaaaatgaatt-attggcatggctctcgcatactaacaatgcccttca |
44787407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 28335530 - 28335571
Alignment:
| Q |
396 |
atgaagttgcaaagtccaaattttgttgaagggtaatcaaat |
437 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
28335530 |
atgaagctgcaatgtcaaaattttgttgaagggtaatcaaat |
28335571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 437
Target Start/End: Original strand, 44787485 - 44787526
Alignment:
| Q |
396 |
atgaagttgcaaagtccaaattttgttgaagggtaatcaaat |
437 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
44787485 |
atgaagctgcaatgtcaaaattttgttgaagggtaatcaaat |
44787526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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