View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11863_low_3 (Length: 379)
Name: NF11863_low_3
Description: NF11863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11863_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 36 - 197
Target Start/End: Original strand, 32707678 - 32707839
Alignment:
| Q |
36 |
aaatataccaccgcgtttacactttacacttggtttctttggttggtacatatgaatgtttacactaagttttcctaaaacaattatgttttcgcagttt |
135 |
Q |
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| T |
32707678 |
aaatataccaccgcgtttacactttacacttggtttctttggttggtacatatgaatgtttacactaagtttttctaaaacaattatgttttcgcagttt |
32707777 |
T |
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| Q |
136 |
tctataatt-nnnnnnnnnngcgtacaaagtgaaaataagatggtattttctgtaataattag |
197 |
Q |
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| T |
32707778 |
tctataattaaaaaaaaaaagcg-acaaagtgaaaataagatggtattttctgtaataattag |
32707839 |
T |
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Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 265 - 361
Target Start/End: Original strand, 32707907 - 32708003
Alignment:
| Q |
265 |
aacaagatcttcaagctcataaaggttcctcgccctcaccaacaccgcaaaaaaggaatgatatatagttcaaaccaaatatagttcaacacaggtt |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32707907 |
aacaagatcttcaagctcataaaggttcctcgccctcaccaacaccgcaaaaaaggaatgatatatagttcaaaccaaatatagttcaacacaggtt |
32708003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 326
Target Start/End: Complemental strand, 16959676 - 16959622
Alignment:
| Q |
272 |
tcttcaagctcataaaggttcctcgccctcaccaacaccgcaaaaaaggaatgat |
326 |
Q |
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|||| ||||||||||||||| || |||||||||||||| ||||||||||||||| |
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| T |
16959676 |
tctttaagctcataaaggtttcttgccctcaccaacacaccaaaaaaggaatgat |
16959622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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