View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11863_low_6 (Length: 271)

Name: NF11863_low_6
Description: NF11863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11863_low_6
NF11863_low_6
[»] chr1 (36 HSPs)
chr1 (17-270)||(31745389-31745641)
chr1 (116-262)||(40377012-40377158)
chr1 (116-263)||(7549813-7549960)
chr1 (141-254)||(36393479-36393592)
chr1 (141-262)||(50974564-50974685)
chr1 (116-248)||(45584509-45584641)
chr1 (116-262)||(31652593-31652738)
chr1 (116-263)||(44719151-44719298)
chr1 (141-233)||(4039621-4039713)
chr1 (141-262)||(5851530-5851649)
chr1 (140-246)||(25302066-25302172)
chr1 (116-217)||(25095579-25095680)
chr1 (119-254)||(34596118-34596250)
chr1 (139-227)||(45753443-45753531)
chr1 (168-262)||(12148289-12148383)
chr1 (116-225)||(34445639-34445748)
chr1 (146-254)||(12636305-12636414)
chr1 (141-254)||(40203076-40203189)
chr1 (141-224)||(5115634-5115717)
chr1 (119-225)||(28672315-28672420)
chr1 (139-260)||(5787434-5787554)
chr1 (173-255)||(42850094-42850176)
chr1 (171-248)||(50222611-50222688)
chr1 (141-228)||(33744159-33744246)
chr1 (167-262)||(48947225-48947320)
chr1 (116-257)||(13954126-13954271)
chr1 (146-228)||(39241430-39241512)
chr1 (172-228)||(48253319-48253375)
chr1 (166-245)||(44442270-44442349)
chr1 (142-227)||(3338051-3338137)
chr1 (140-194)||(5597710-5597764)
chr1 (116-178)||(27396102-27396164)
chr1 (163-261)||(50328308-50328405)
chr1 (135-228)||(14774091-14774184)
chr1 (144-217)||(28171517-28171590)
chr1 (181-225)||(15549642-15549686)
[»] chr4 (39 HSPs)
chr4 (116-262)||(49446583-49446730)
chr4 (116-255)||(44646522-44646661)
chr4 (141-254)||(44647879-44647992)
chr4 (117-261)||(42197007-42197150)
chr4 (116-237)||(6316821-6316942)
chr4 (135-247)||(9802621-9802732)
chr4 (144-259)||(20390023-20390138)
chr4 (133-248)||(42844030-42844145)
chr4 (142-262)||(41468080-41468200)
chr4 (144-238)||(33982423-33982517)
chr4 (166-256)||(44088286-44088376)
chr4 (120-228)||(25196110-25196218)
chr4 (158-251)||(50115059-50115149)
chr4 (116-217)||(40480205-40480306)
chr4 (141-228)||(12103864-12103951)
chr4 (141-254)||(24395194-24395308)
chr4 (157-247)||(49144774-49144864)
chr4 (181-262)||(38494748-38494829)
chr4 (116-195)||(28165362-28165442)
chr4 (145-227)||(39727579-39727660)
chr4 (116-228)||(50086432-50086543)
chr4 (144-217)||(34235910-34235984)
chr4 (181-247)||(36721591-36721657)
chr4 (150-259)||(49769110-49769219)
chr4 (158-217)||(31871090-31871149)
chr4 (116-246)||(52373050-52373181)
chr4 (181-263)||(41370157-41370239)
chr4 (157-246)||(1696194-1696283)
chr4 (141-214)||(53919863-53919936)
chr4 (141-233)||(27346293-27346385)
chr4 (139-214)||(5387947-5388022)
chr4 (142-244)||(51105918-51106020)
chr4 (146-195)||(27706954-27707003)
chr4 (139-247)||(27981368-27981477)
chr4 (116-177)||(44088211-44088272)
chr4 (116-245)||(52650697-52650826)
chr4 (140-228)||(11875452-11875539)
chr4 (116-215)||(23230272-23230372)
chr4 (116-228)||(47560596-47560707)
[»] chr3 (28 HSPs)
chr3 (116-262)||(34758899-34759045)
chr3 (117-262)||(54911988-54912133)
chr3 (141-262)||(18399149-18399271)
chr3 (117-254)||(30687077-30687214)
chr3 (116-255)||(27968170-27968307)
chr3 (116-255)||(52340118-52340257)
chr3 (128-246)||(38388694-38388812)
chr3 (116-227)||(28434481-28434591)
chr3 (116-217)||(779710-779810)
chr3 (116-233)||(38704969-38705086)
chr3 (152-250)||(7754772-7754871)
chr3 (141-254)||(4033026-4033138)
chr3 (163-254)||(19898100-19898191)
chr3 (161-228)||(55110042-55110109)
chr3 (117-254)||(25548196-25548333)
chr3 (145-219)||(43749507-43749581)
chr3 (157-227)||(53433211-53433281)
chr3 (144-199)||(1680511-1680566)
chr3 (137-228)||(2831538-2831629)
chr3 (141-225)||(39976721-39976804)
chr3 (161-236)||(54955783-54955859)
chr3 (140-194)||(11404700-11404754)
chr3 (167-217)||(40546348-40546398)
chr3 (116-153)||(29497248-29497285)
chr3 (116-161)||(29611990-29612035)
chr3 (172-228)||(21490626-21490682)
chr3 (153-217)||(30463992-30464056)
chr3 (159-199)||(37775371-37775411)
[»] chr5 (25 HSPs)
chr5 (116-259)||(8247037-8247180)
chr5 (116-261)||(3263717-3263862)
chr5 (119-262)||(19692696-19692840)
chr5 (144-255)||(5356295-5356406)
chr5 (142-262)||(35395184-35395304)
chr5 (116-261)||(10051700-10051845)
chr5 (116-257)||(28793305-28793446)
chr5 (118-255)||(1354345-1354481)
chr5 (144-262)||(22473432-22473551)
chr5 (141-237)||(21582367-21582463)
chr5 (123-225)||(14042440-14042542)
chr5 (142-239)||(31889611-31889709)
chr5 (116-199)||(4725897-4725979)
chr5 (171-257)||(142350-142436)
chr5 (139-193)||(22871913-22871967)
chr5 (140-225)||(3758194-3758279)
chr5 (153-225)||(26663642-26663714)
chr5 (153-225)||(26935237-26935309)
chr5 (119-254)||(14474998-14475133)
chr5 (116-194)||(27650866-27650944)
chr5 (142-195)||(37976444-37976497)
chr5 (140-194)||(12933327-12933381)
chr5 (153-199)||(24241210-24241256)
chr5 (168-225)||(24241039-24241096)
chr5 (203-263)||(43145883-43145943)
[»] chr2 (26 HSPs)
chr2 (116-263)||(8789826-8789973)
chr2 (116-261)||(44941072-44941216)
chr2 (116-259)||(20682990-20683133)
chr2 (141-255)||(8773670-8773784)
chr2 (139-237)||(4238341-4238438)
chr2 (139-262)||(18053008-18053130)
chr2 (141-254)||(42945012-42945125)
chr2 (116-227)||(6761751-6761862)
chr2 (144-254)||(2393038-2393148)
chr2 (141-255)||(34546265-34546379)
chr2 (128-254)||(42966938-42967066)
chr2 (154-226)||(1070568-1070639)
chr2 (116-261)||(5961954-5962101)
chr2 (116-230)||(3882586-3882700)
chr2 (119-211)||(433551-433643)
chr2 (140-192)||(8898861-8898913)
chr2 (116-228)||(18227092-18227204)
chr2 (142-225)||(2825983-2826066)
chr2 (128-195)||(13442636-13442703)
chr2 (144-228)||(35228732-35228816)
chr2 (141-199)||(3199541-3199599)
chr2 (139-246)||(7271769-7271880)
chr2 (117-254)||(14102297-14102435)
chr2 (140-225)||(31448315-31448400)
chr2 (146-199)||(45212057-45212110)
chr2 (140-228)||(33275918-33276005)
[»] chr7 (30 HSPs)
chr7 (142-262)||(30412910-30413030)
chr7 (116-262)||(8170001-8170147)
chr7 (152-262)||(48137789-48137899)
chr7 (141-235)||(42493703-42493798)
chr7 (116-247)||(47507580-47507711)
chr7 (120-258)||(38452146-38452283)
chr7 (146-243)||(2964049-2964146)
chr7 (116-248)||(16878677-16878809)
chr7 (143-254)||(44391426-44391537)
chr7 (182-258)||(46684550-46684626)
chr7 (139-230)||(5248088-5248179)
chr7 (141-233)||(2741168-2741260)
chr7 (139-257)||(15034793-15034911)
chr7 (144-252)||(43670409-43670517)
chr7 (187-262)||(47305516-47305592)
chr7 (136-225)||(676400-676488)
chr7 (128-227)||(37352436-37352535)
chr7 (133-217)||(33887887-33887971)
chr7 (116-260)||(36015002-36015141)
chr7 (142-256)||(36285774-36285887)
chr7 (116-199)||(45375399-45375483)
chr7 (181-228)||(15995924-15995971)
chr7 (119-228)||(35754017-35754126)
chr7 (168-244)||(44495238-44495314)
chr7 (181-228)||(14574768-14574815)
chr7 (110-217)||(35599837-35599944)
chr7 (139-228)||(31477085-31477175)
chr7 (115-228)||(10031945-10032058)
chr7 (138-191)||(25120218-25120271)
chr7 (187-254)||(27359398-27359466)
[»] chr8 (18 HSPs)
chr8 (116-262)||(31206280-31206426)
chr8 (146-254)||(38956884-38956992)
chr8 (139-263)||(5217747-5217869)
chr8 (141-246)||(45368729-45368834)
chr8 (142-255)||(5020051-5020162)
chr8 (143-254)||(20169716-20169827)
chr8 (116-257)||(9632898-9633040)
chr8 (113-195)||(33636685-33636767)
chr8 (119-245)||(39691121-39691247)
chr8 (141-254)||(7044329-7044442)
chr8 (116-216)||(24103087-24103187)
chr8 (116-208)||(39932721-39932813)
chr8 (116-254)||(10335020-10335159)
chr8 (141-179)||(36819755-36819793)
chr8 (116-191)||(37564393-37564468)
chr8 (117-179)||(2124141-2124203)
chr8 (116-176)||(5968377-5968437)
chr8 (116-228)||(22209376-22209488)
[»] chr6 (12 HSPs)
chr6 (141-262)||(12383008-12383129)
chr6 (141-254)||(16442075-16442188)
chr6 (144-239)||(8176324-8176419)
chr6 (142-225)||(12307821-12307904)
chr6 (116-245)||(31702747-31702874)
chr6 (119-227)||(7465451-7465558)
chr6 (185-260)||(22695473-22695549)
chr6 (117-188)||(22696000-22696071)
chr6 (145-243)||(35241410-35241509)
chr6 (141-254)||(6048268-6048381)
chr6 (144-225)||(26311807-26311889)
chr6 (116-217)||(30509286-30509387)
[»] scaffold0246 (1 HSPs)
scaffold0246 (116-217)||(18144-18245)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 31745641 - 31745389
Alignment:
Q  17 aagcttgaatctgcaaaatatgtacatcaataaaacatgtcataacaaaaatatttaattatgacaagaacagtgttgagttaatnnnnnnngttaattg 116  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||       ||||||||    
T  31745641 aagcttgaatctgcaaaatatgtaaatcaataaaacatgtcataacataaatatttaattatgacaagaacagtgttgagttaataaaaaa-gttaattg 31745543  T
Q  117 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattac 216  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31745542 tcttgttaactagtgcctccgaggcactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattac 31745443  T
Q  217 acatattttcatgataagttactatttaaaggccttaactagtgcctagtgcct 270  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31745442 acatatttttatgataagttactatttaaaggccttaactagtgcctagtgcct 31745389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 262
Target Start/End: Original strand, 40377012 - 40377158
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| |||||| |   | |||||||||| ||||| ||||||| |||| ||||||||| |||||||||||||| ||||| | || |||||||||    
T  40377012 gtcttgttaacgagtgccccttgggcactctttaaggattccaaaagaagaaataattttataaaaaagtcaaatattttgattcccaattcattgatta 40377111  T
Q  216 cacatattttcatgataagttactatttaaaggccttaactagtgcc 262  Q
    ||||  |||||||||||| |||| |||||||||||||||||||||||    
T  40377112 cacaacttttcatgataaattaccatttaaaggccttaactagtgcc 40377158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 263
Target Start/End: Original strand, 7549813 - 7549960
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| |||| |  || ||||||||||||  |||  ||||||| |||| ||||||||| |||||||||||||||||||   ||||||||||| |    
T  7549813 gtcttgttaacgagtgtcctcgggacactctttaagaatttcaaaagaagaaataattttataaaaaagtcaaatatttcgatttctgatgcattgatca 7549912  T
Q  216 cacatattttcatgataagttactatttaaaggccttaactagtgcct 263  Q
    ||||  ||||||||||||||||| |||||||||||||| |||||||||    
T  7549913 cacaacttttcatgataagttacaatttaaaggccttagctagtgcct 7549960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 36393479 - 36393592
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 240  Q
    |||||||||| ||||  ||||||| ||||||| |||||| ||| |||||||||| |||| |||||||||||||||||| ||||||||||||||||||| |    
T  36393479 cactctttaaggatttcaaaagaaaaaattatgttataaaaaaatcaaatattttgattttcgatgcattgattacacgtattttcatgataagttacca 36393578  T
Q  241 tttaaaggccttaa 254  Q
    |||||||| |||||    
T  36393579 tttaaaggtcttaa 36393592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 141 - 262
Target Start/End: Complemental strand, 50974685 - 50974564
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 240  Q
    ||||||| || ||||  ||||||| |||||||||||||| ||||||||||||||| ||| |||||||||| |||||| ||||||||||||||| |||| |    
T  50974685 cactcttgaaggatttcaaaagaaaaaattattttataaaaaagtcaaatatttcaattttcgatgcattaattacatatattttcatgataaattacca 50974586  T
Q  241 tttaaaggccttaactagtgcc 262  Q
    |||||||| |||||| ||||||    
T  50974585 tttaaaggtcttaacgagtgcc 50974564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 116 - 248
Target Start/End: Original strand, 45584509 - 45584641
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| | |||| ||| | |||||||||| ||||| ||||||| |||||||||||||| ||||| ||||||||  |||   |||| ||||||||    
T  45584509 gtcttgttaacgaatgcccccggggcactctttaaggattccaaaagaagaaattattttataaaaaagttaaatattttaatttctgatgtattgatta 45584608  T
Q  216 cacatattttcatgataagttactatttaaagg 248  Q
    |||||||||||||||||||||||| ||||||||    
T  45584609 cacatattttcatgataagttactttttaaagg 45584641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 116 - 262
Target Start/End: Original strand, 31652593 - 31652738
Alignment:
Q  116 gtcttgttaaccagtgcctccg-agacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatt 214  Q
    ||||||||||| |||| ||||| ||| ||||||||| ||||  |||| || |||||||||||||| ||||||||||||||  |||  ||||||| |||||    
T  31652593 gtcttgttaacgagtgtctccggaga-actctttaaggatttcaaaa-aagaaattattttataaaaaagtcaaatattttaatttccgatgcaatgatt 31652690  T
Q  215 acacatattttcatgataagttactatttaaaggccttaactagtgcc 262  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||||||    
T  31652691 acacatattttcatgataggttaccatttaaagcccttaactagtgcc 31652738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 116 - 263
Target Start/End: Original strand, 44719151 - 44719298
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| |||| | ||| |||||| ||||| ||||| |||| |||| |||||||||||| ||||| ||||||| |||||   |||||| ||||||    
T  44719151 gtcttgttaacgagtgtccccgggacactttttaaggattccaaaaaaatatattattttataaaaaagttaaatattccgatttctgatgcaatgatta 44719250  T
Q  216 cacatattttcatgataagttactatttaaaggccttaactagtgcct 263  Q
    |||| ||||||||||||| |||| ||||||||  ||||||||||||||    
T  44719251 cacacattttcatgataaattaccatttaaagctcttaactagtgcct 44719298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 141 - 233
Target Start/End: Complemental strand, 4039713 - 4039621
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataa 233  Q
    |||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||||  | |||||||||||||| ||||||| |||||||    
T  4039713 cactctttaaggattccaaaagaataaattattttataaaaaagtcaaatatttcgatttccaatgcattgattacatatatttttatgataa 4039621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 141 - 262
Target Start/End: Original strand, 5851530 - 5851649
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 240  Q
    |||||||||| ||||  ||||||| |||| ||||||||| ||| ||||| ||||||||| ||||||||||||||||| |||  ||||||||||||||| |    
T  5851530 cactctttaaggatttcaaaagaagaaataattttataaaaaaatcaaagatttcgattttcgatgcattgattacaaata--ttcatgataagttacca 5851627  T
Q  241 tttaaaggccttaactagtgcc 262  Q
    ||||||||| ||| ||||||||    
T  5851628 tttaaaggctttatctagtgcc 5851649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 140 - 246
Target Start/End: Original strand, 25302066 - 25302172
Alignment:
Q  140 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttact 239  Q
    ||||||||||| ||||| |||| || |||| ||| ||||| ||||||||| ||||||||| || || ||||||||||||||||||||||||||||||||     
T  25302066 acactctttaaggattccaaaacaaaaaataattgtataaaaaagtcaaagatttcgattttcaatacattgattacacatattttcatgataagttacc 25302165  T
Q  240 atttaaa 246  Q
    |||||||    
T  25302166 atttaaa 25302172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 25095579 - 25095680
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||| | |||| ||||  |||||||||||| ||||||||||||| ||||||||| |||| ||||||||||||||| ||| |||||||||||||||    
T  25095579 gtcttgttagcgagtgtctccatgacactctttaaggattctaaaagaagaaattatttcataaaaaagtcaaatatttcaattttcgatgcattgatta 25095678  T
Q  216 ca 217  Q
    ||    
T  25095679 ca 25095680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 119 - 254
Target Start/End: Complemental strand, 34596250 - 34596118
Alignment:
Q  119 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 218  Q
    ||||||||  ||||||||| |||| || |||| ||||||||||||| ||||||||||||||  || ||||||||||||||| || |||||||||||||||    
T  34596250 ttgttaacgggtgcctccg-gacattcattaaggattctaaaagaagaaattattttataa--aattcaaatatttcgattttcaatgcattgattacac 34596154  T
Q  219 atattttcatgataagttactatttaaaggccttaa 254  Q
    ||| |||||| | ||||||  ||||||||| |||||    
T  34596153 ataatttcataaaaagttatcatttaaaggtcttaa 34596118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 45753443 - 45753531
Alignment:
Q  139 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 227  Q
    |||||||||||||||||||||||||| ||||||||| | || || |||||||||||| ||| || |||||||||||||||| |||||||    
T  45753443 gacactctttaaagattctaaaagaagaaattatttcagaaaaatgtcaaatatttcaattttcaatgcattgattacacaaattttca 45753531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 262
Target Start/End: Complemental strand, 12148383 - 12148289
Alignment:
Q  168 attattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcc 262  Q
    |||||||||| | ||||| |||||||| ||||  | |||||||| |||||||||||||||||||||||||| |||||||| | ||||||||||||    
T  12148383 attattttatgaaaaagtaaaatattttgatttccaatgcattggttacacatattttcatgataagttaccatttaaagactttaactagtgcc 12148289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 225
Target Start/End: Original strand, 34445639 - 34445748
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| |||||| |||   |||||||||| ||||| ||||||| |||||| ||||||| |||||||||||||||||||  | ||||||||||||    
T  34445639 gtcttgttaacgagtgcccccggagcactctttaaggattccaaaagaagaaattaatttataaaaaagtcaaatatttcgatttccaatgcattgatta 34445738  T
Q  216 cacatatttt 225  Q
     |||| ||||    
T  34445739 gacatgtttt 34445748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 254
Target Start/End: Complemental strand, 12636414 - 12636305
Alignment:
Q  146 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat-gataagttactattta 244  Q
    ||||| ||||| |||||||||||| ||||||| | |||||||| ||||||||||  | || ||||||||||||||||||||||  | || ||||||||||    
T  12636414 tttaaggattccaaaagaataaataattttattaaaaagtcaagtatttcgatttcctatacattgattacacatattttcataaaaaaattactattta 12636315  T
Q  245 aaggccttaa 254  Q
    |||| |||||    
T  12636314 aaggtcttaa 12636305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 40203189 - 40203076
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 240  Q
    |||||||||| ||||  |||| || ||||||||| |||| ||||||||||||||| |||  | ||||||||||||||||||||||||    ||||||| |    
T  40203189 cactctttaaggattacaaaacaagaaattatttcataaaaaagtcaaatatttcaatttccaatgcattgattacacatattttcagacaaagttacca 40203090  T
Q  241 tttaaaggccttaa 254  Q
    ||||||| ||||||    
T  40203089 tttaaagaccttaa 40203076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 5115717 - 5115634
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattt 224  Q
    |||||||||| ||||||||||||||||||||| |||||| ||||| ||||||||| |||  | ||||||| |||||||| ||||    
T  5115717 cactctttaaggattctaaaagaataaattatgttataaaaaagttaaatatttcaatttccaatgcattaattacacaaattt 5115634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 225
Target Start/End: Complemental strand, 28672420 - 28672315
Alignment:
Q  119 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 218  Q
    |||||||  ||||| |||||||||||||| ||  ||||||||| ||  ||||||||| ||| |||||||||||||| |||| |  |||||||||||||||    
T  28672420 ttgttaatgagtgcatccgagacactctt-aagcattctaaaataaacaattattttttaaaaaagtcaaatattttgattttaaatgcattgattacac 28672322  T
Q  219 atatttt 225  Q
    |||||||    
T  28672321 atatttt 28672315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 260
Target Start/End: Complemental strand, 5787554 - 5787434
Alignment:
Q  139 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttac 238  Q
    |||||||||||| ||||| ||||||| ||| |||||||||| | ||| ||||||||| |||  | ||||||| ||||||||||||||  ||||||||||     
T  5787554 gacactctttaaggattc-aaaagaagaaaatattttataaaatagttaaatatttcaatttccaatgcattaattacacatatttttttgataagttat 5787456  T
Q  239 tatttaaaggccttaactagtg 260  Q
      ||||||| | ||||||||||    
T  5787455 attttaaagactttaactagtg 5787434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 42850176 - 42850094
Alignment:
Q  173 tttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaac 255  Q
    ||||||| ||||| ||||||||||||| |||||||||| |||| | ||||||| ||||||| |||  ||||||||| ||||||    
T  42850176 tttataaaaaagttaaatatttcgattttcgatgcattaattatatatatttttatgataaattatcatttaaaggtcttaac 42850094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 50222688 - 50222611
Alignment:
Q  171 attttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaagg 248  Q
    ||||||||| ||| ||||||||||  ||| || ||||||||||||||| ||||||||| | || ||||||||||||||    
T  50222688 attttataaaaaaatcaaatattttaattttcaatgcattgattacacttattttcataaaaaattactatttaaagg 50222611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 33744246 - 33744159
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 228  Q
    ||||||||||  ||| ||||| ||  ||||||||| | | ||||||||||||||||||| || |||||||||||||| || |||||||    
T  33744246 cactctttaagcattttaaaataagtaattatttttttaaaaagtcaaatatttcgattttcaatgcattgattacatattttttcat 33744159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 262
Target Start/End: Original strand, 48947225 - 48947320
Alignment:
Q  167 aattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcc 262  Q
    ||||||||| ||| || ||||||  |||| |||  | ||||| |||||||||| |||||||| | ||||||| |||||||| ||||||||||||||    
T  48947225 aattattttttaaaaatgtcaaagttttcaatttccaatgcactgattacacaaattttcataaaaagttaccatttaaagtccttaactagtgcc 48947320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 257
Target Start/End: Complemental strand, 13954271 - 13954126
Alignment:
Q  116 gtcttgttaaccagtgcctccgag-----acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcatt 210  Q
    |||||||||||  |||||||||||     ||||||||||| ||||||| ||||| |||||| ||||||| ||| ||||| |||| ||||  | ||||| |    
T  13954271 gtcttgttaacgggtgcctccgaggtggaacactctttaaggattctagaagaagaaattactttataaaaaaatcaaaaattttgatttccaatgca-t 13954173  T
Q  211 gattacacatattttcatgataagttactatttaaaggccttaacta 257  Q
    ||||||| | |||||||  |||| ||   ||||||||||||||||||    
T  13954172 gattacatacattttcacaataaattttcatttaaaggccttaacta 13954126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 228
Target Start/End: Complemental strand, 39241512 - 39241430
Alignment:
Q  146 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 228  Q
    ||||| |||| ||||| ||||| ||||||||||| |||   ||||||||  ||| |||||||||||||||||||| |||||||    
T  39241512 tttaaggattttaaaaaaataatttattttataaaaaaaataaatattttaattttcgatgcattgattacacatgttttcat 39241430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 48253319 - 48253375
Alignment:
Q  172 ttttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 228  Q
    |||||||| |||||||| |||||||||| || || ||||||||| ||||||||||||    
T  48253319 ttttataaaaaagtcaactatttcgattttcaatacattgattatacatattttcat 48253375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 44442270 - 44442349
Alignment:
Q  166 aaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaa 245  Q
    |||||||| | ||| ||||||||||||||| ||| || || |||| | |||||||||||| || | ||||||||||||||    
T  44442270 aaattattctttaaaaaagtcaaatatttcaattttcaatacattaaatacacatatttttataaaaagttactatttaa 44442349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 3338137 - 3338051
Alignment:
Q  142 actctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgattacacatattttca 227  Q
    |||||||||| |||||||||||| ||||||||| || || ||| | || |||||| ||| || |||||||||||||| | |||||||    
T  3338137 actctttaaacattctaaaagaagaaattatttcataaaaaaaattaagtatttcaattttcaatgcattgattacataaattttca 3338051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 5597710 - 5597764
Alignment:
Q  140 acactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 194  Q
    |||||||||||| ||| |||||||| |||||||| ||||| ||||| ||||||||    
T  5597710 acactctttaaatattttaaaagaagaaattattctataaaaaagttaaatattt 5597764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 27396102 - 27396164
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttata 178  Q
    ||||||||||| ||| || |||||||| |||||||  ||||||||| || |||||||||||||    
T  27396102 gtcttgttaacaagtaccaccgagacattctttaagaattctaaaataagaaattattttata 27396164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 261
Target Start/End: Complemental strand, 50328405 - 50328308
Alignment:
Q  163 aataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgc 261  Q
    ||||||||||||||||| ||| | |||||||| |||| | ||| | || |||| ||||||||| |||||||||||  ||||||| | ||||| ||||||    
T  50328405 aataaattattttataaaaaatt-aaatattttgatttttgatactttaattatacatatttttatgataagttatcatttaaaagtcttaattagtgc 50328308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 14774091 - 14774184
Alignment:
Q  135 ccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 228  Q
    |||||| | |||||||  ||||||||| ||| ||||||||  | | ||| ||||||||||||||| || ||||||||| || ||| ||||||||    
T  14774091 ccgagatattctttaagcattctaaaataatcaattatttgtttaaaaaatcaaatatttcgattttcaatgcattgaatatacacattttcat 14774184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 28171590 - 28171517
Alignment:
Q  144 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 217  Q
    |||||||  |||| ||||||| |||||||||||||| ||||| ||||||||| ||| |  ||||||| ||||||    
T  28171590 tctttaagcattcaaaaagaaaaaattattttataaaaaagttaaatatttcaatttttaatgcattcattaca 28171517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 15549642 - 15549686
Alignment:
Q  181 aaagtcaaatatttcgattctcgatgcattgattacacatatttt 225  Q
    ||||| ||||||||||||| || |||||||||||||||| |||||    
T  15549642 aaagtaaaatatttcgattttcaatgcattgattacacacatttt 15549686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 116 - 262
Target Start/End: Complemental strand, 49446730 - 49446583
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgatt 214  Q
    ||||||||||| ||||||  || | |||||||||| ||||| ||||||| || ||||||||||| ||| ||||||||||||||||  |||||||||||||    
T  49446730 gtcttgttaacaagtgccctcggggcactctttaaggattccaaaagaagaagttattttataaaaaaagtcaaatatttcgatttccgatgcattgatt 49446631  T
Q  215 acacatattttcatgataagttactatttaaaggccttaactagtgcc 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49446630 acacatattttcatgataagttactatttaaaggccttaactagtgcc 49446583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 116 - 255
Target Start/End: Complemental strand, 44646661 - 44646522
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| |||||| ||| | || ||||||| ||||  ||||||| ||| ||||||||||||||||||||||||||||||  ||||||||||||||    
T  44646661 gtcttgttaacgagtgcccccggggcattctttaaggatttcaaaagaagaaactattttataataaagtcaaatatttcgatttccgatgcattgatta 44646562  T
Q  216 cacatattttcatgataagttactatttaaaggccttaac 255  Q
    ||||||||||||||||||||||||||| ||| ||||||||    
T  44646561 cacatattttcatgataagttactattcaaaagccttaac 44646522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 44647992 - 44647879
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 240  Q
    |||||||||||||||| ||||||| ||| |||||||||||||| ||||||||||| |||  ||||||||| |||||||||||||||||||||||||||||    
T  44647992 cactctttaaagattccaaaagaagaaactattttataataaaatcaaatatttcaatttccgatgcattaattacacatattttcatgataagttacta 44647893  T
Q  241 tttaaaggccttaa 254  Q
    || |||||||||||    
T  44647892 ttcaaaggccttaa 44647879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 117 - 261
Target Start/End: Original strand, 42197007 - 42197150
Alignment:
Q  117 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattac 216  Q
    |||||||||| ||||||| ||  |||||||||||| |||||||||||| |||||||||||| | ||| |||||||||| |||| ||||| ||||||||||    
T  42197007 tcttgttaacgagtgccttcggaacactctttaaa-attctaaaagaagaaattattttattaaaaaatcaaatattttgattttcgatacattgattac 42197105  T
Q  217 acatattttcatgataagttactatttaaaggccttaactagtgc 261  Q
    ||||||||| ||||||| |||| |||||||| | |||||||||||    
T  42197106 acatatttttatgataaattaccatttaaagactttaactagtgc 42197150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 6316942 - 6316821
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| |||||||||| | |||||||||||||||  ||||||| |||| ||||||||| |||| |||| |||| |||| || ||||||||||||    
T  6316942 gtcttgttaacgagtgcctccggggcactctttaaagatttcaaaagaagaaataattttataaaaaaggcaaagattttgattttcaatgcattgatta 6316843  T
Q  216 cacatattttcatgataagtta 237  Q
    ||||||||||||||||||||||    
T  6316842 cacatattttcatgataagtta 6316821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 135 - 247
Target Start/End: Complemental strand, 9802732 - 9802621
Alignment:
Q  135 ccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataag 234  Q
    ||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||| ||||  |||| ||||||||||||||||||| ||||||||    
T  9802732 ccgagacactctttaaa-attctaaaagaaaaaattattttataaaaaagtcaaatattttgatttccgatacattgattacacatatttttatgataag 9802634  T
Q  235 ttactatttaaag 247  Q
    ||| | |||||||    
T  9802633 ttattctttaaag 9802621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 259
Target Start/End: Original strand, 20390023 - 20390138
Alignment:
Q  144 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 243  Q
    |||||||  |||| |||| || |||| ||||||||| |||||||||||||| |||| ||||||||||||| |||||  ||||||||||||||||| ||||    
T  20390023 tctttaagaattccaaaacaagaaataattttataaaaaagtcaaatattttgattttcgatgcattgatcacacaacttttcatgataagttaccattt 20390122  T
Q  244 aaaggccttaactagt 259  Q
    ||| ||||||||||||    
T  20390123 aaaagccttaactagt 20390138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 133 - 248
Target Start/End: Original strand, 42844030 - 42844145
Alignment:
Q  133 ctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgata 232  Q
    ||||| ||||||||| |||||||  |||| |  |||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| |||    
T  42844030 ctccgggacactcttgaaagatttcaaaaaacgaaattattttataaaaaaatcaaatatttcgattttcgatgcattgattacacatattttcataata 42844129  T
Q  233 agttactatttaaagg 248  Q
    | ||||  ||||||||    
T  42844130 aattaccctttaaagg 42844145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 142 - 262
Target Start/End: Original strand, 41468080 - 41468200
Alignment:
Q  142 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 241  Q
    |||||||||  |||| ||||||| ||||||| |||||| ||||| ||||||| |||||   |||||||||||||||  |||||| |||| ||||||| ||    
T  41468080 actctttaagaattccaaaagaagaaattatgttataaaaaagttaaatattccgatttctgatgcattgattacatgtatttttatgaaaagttaccat 41468179  T
Q  242 ttaaaggccttaactagtgcc 262  Q
    |||||||||||||||||||||    
T  41468180 ttaaaggccttaactagtgcc 41468200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 33982423 - 33982517
Alignment:
Q  144 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttac 238  Q
    ||||||| ||||  ||||||| |||||||||||||| ||||| |||||||||||||  |||| ||||||||||| ||||||||||||||||||||    
T  33982423 tctttaaggatttcaaaagaaaaaattattttataaaaaagttaaatatttcgatttccgatacattgattacatatattttcatgataagttac 33982517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 44088286 - 44088376
Alignment:
Q  166 aaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaact 256  Q
    |||||||||||| | ||| |||||||||| |||| | | |||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  44088286 aaattattttattaaaaaatcaaatattttgatttttggtgcattgattacacatatcttcatgataagttactatttaaagtccttaact 44088376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 228
Target Start/End: Original strand, 25196110 - 25196218
Alignment:
Q  120 tgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacaca 219  Q
    ||||||| ||||||||||| ||||||||||| ||||||||||||| |||||| ||||||| |||||||||||||| ||||  | |  |||| ||||||||    
T  25196110 tgttaacgagtgcctccgaaacactctttaaggattctaaaagaaaaaattaatttataaaaaagtcaaatattttgatttccaagacattaattacaca 25196209  T
Q  220 tattttcat 228  Q
    | |||||||    
T  25196210 tgttttcat 25196218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 50115059 - 50115149
Alignment:
Q  158 aaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggcct 251  Q
    ||||||| |||||||||||||| ||||||||| |||||||||  | ||||||||||||||||||||   |||||||||||| ||||||||||||    
T  50115059 aaaagaagaaattattttataaaaaagtcaaagatttcgatttcctatgcattgattacacatatt---atgataagttaccatttaaaggcct 50115149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 40480306 - 40480205
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||| ||| |||||||| | |||||||||||| ||| ||||||||| ||||||| | |||| ||||||||||||||| |||| |||| |||||||||    
T  40480306 gtcttgtaaacgagtgcctctgggacactctttaaggatgctaaaagaagaaattatgtcataaaaaagtcaaatatttcaattcccgatacattgatta 40480207  T
Q  216 ca 217  Q
    ||    
T  40480206 ca 40480205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 228
Target Start/End: Complemental strand, 12103951 - 12103864
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 228  Q
    |||| ||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||  | |  ||||||||||||||||||||||    
T  12103951 cactttttaaggattctaaaagaataaattatttcataaaaaagtcaaataattcgatttccaaaacattgattacacatattttcat 12103864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 24395308 - 24395194
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatg-cattgattacacatattttcatgataagttac 238  Q
    |||||||||| ||||||||||||| |||||| ||||||| ||| |||||||||||||||| || | | ||||||||||||||||||||||   |||||||    
T  24395308 cactctttaaggattctaaaagaagaaattaatttataaaaaaggtcaaatatttcgatt-tctaagacattgattacacatattttcatacaaagttac 24395210  T
Q  239 tatttaaaggccttaa 254  Q
    ||| |||||| |||||    
T  24395209 tatataaaggtcttaa 24395194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 157 - 247
Target Start/End: Original strand, 49144774 - 49144864
Alignment:
Q  157 taaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaag 247  Q
    |||||||| |||||||||||||| ||||| ||| |||| |||| ||||||||||||||||| ||||||| |||| || |||| ||||||||    
T  49144774 taaaagaagaaattattttataaaaaagttaaaaattttgattttcgatgcattgattacatatatttttatgaaaaattaccatttaaag 49144864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 38494829 - 38494748
Alignment:
Q  181 aaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcc 262  Q
    |||| ||||| |||||||| ||||||||||||||||||||||||| ||||||| |||  || ||||| ||||||||||||||    
T  38494829 aaaggcaaatctttcgattttcgatgcattgattacacatatttttatgataaattatcatataaagaccttaactagtgcc 38494748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 195
Target Start/End: Original strand, 28165362 - 28165442
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttc 195  Q
    ||||||||||| |||||| | |||| ||||||||||||||||||||||| |||||||||||| || ||| |||||||||||    
T  28165362 gtcttgttaacgagtgcccctgagatactctttaaagattctaaaagaagaaattattttataaaaaaaatcaaatatttc 28165442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 227
Target Start/End: Complemental strand, 39727660 - 39727579
Alignment:
Q  145 ctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 227  Q
    |||||| |||||||||||||||||||||| ||||| ||||||||||||||| |||   ||||||||||||||| | |||||||    
T  39727660 ctttaaggattctaaaagaataaattattctataa-aaagtcaaatatttcaatttctgatgcattgattacataaattttca 39727579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 228
Target Start/End: Complemental strand, 50086543 - 50086432
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| |||||| ||| || |||||||||| |||| |||| ||  ||||||| | ||| ||| |||||||||| |||| || ||||||||| ||    
T  50086543 gtcttgttaacgagtgcc-ccgggaaactctttaaacattccaaaataaacaattattctttaaaaaaatcaaatattttgattttcaatgcattgaata 50086445  T
Q  216 cacatattttcat 228  Q
    |||||||||||||    
T  50086444 cacatattttcat 50086432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 34235910 - 34235984
Alignment:
Q  144 tctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgattaca 217  Q
    |||||||| ||| ||||||||||||||||||||| || ||||||||| ||||| ||| || ||||||||||||||    
T  34235910 tctttaaacattttaaaagaataaattattttataaaaaaagtcaaaaatttcaattttcaatgcattgattaca 34235984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 36721657 - 36721591
Alignment:
Q  181 aaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaag 247  Q
    ||||||||||||||| |||||| |||||||||||||||| |||| ||| | || |||||||||||||    
T  36721657 aaagtcaaatatttcaattctcaatgcattgattacacaaatttccataaaaacttactatttaaag 36721591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 259
Target Start/End: Complemental strand, 49769219 - 49769110
Alignment:
Q  150 aagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggc 249  Q
    |||||| |||||||| |||| ||||||||| |||||  || ||||  |||   || | |||||||||||||||||| |||||||||||| |||||||||     
T  49769219 aagattttaaaagaagaaataattttataaaaaagttgaaaattttaatttatgacgaattgattacacatatttttatgataagttaccatttaaaggt 49769120  T
Q  250 cttaactagt 259  Q
    ||||| ||||    
T  49769119 cttaagtagt 49769110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 31871149 - 31871090
Alignment:
Q  158 aaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 217  Q
    ||||||| |||||||||||||| ||||| ||||||||| |||  ||||||||||||||||    
T  31871149 aaaagaagaaattattttataaaaaagtaaaatatttcaatttccgatgcattgattaca 31871090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 246
Target Start/End: Complemental strand, 52373181 - 52373050
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgatt 214  Q
    ||||||||||| ||| |||||| |||||||||||| |||| | ||| || ||||||||| || || |||||||||||||   ||| || ||||||  |||    
T  52373181 gtcttgttaacgagtacctccgggacactctttaaggattttgaaataagaaattatttcataaaaaaagtcaaatattataattttcaatgcataaatt 52373082  T
Q  215 acacatattttcatgataagttactatttaaa 246  Q
    ||||| |||||||  | || ||||||||||||    
T  52373081 acacaaattttcagaaaaaattactatttaaa 52373050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 41370239 - 41370157
Alignment:
Q  181 aaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcct 263  Q
    ||||| ||||||||| ||| || |||||||||||||||| |||||||| | || |||||||| |||| ||||||  |||||||    
T  41370239 aaagttaaatatttcaattttcaatgcattgattacacaaattttcataaaaacttactattcaaagtccttaaaaagtgcct 41370157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 1696283 - 1696194
Alignment:
Q  157 taaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaa 246  Q
    |||||||| | ||||||  |||| |||| |||||||||| |||  |||||||||||||||| | |||||||  | |||||||||||||||    
T  1696283 taaaagaagatattattccataaaaaagacaaatatttcaatttccgatgcattgattacatacattttcaaaaaaagttactatttaaa 1696194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 53919863 - 53919936
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatt 214  Q
    ||||||||||  |||  |||||||||||||||| ||||| ||||||||| ||||| |||  |||||||||||||    
T  53919863 cactctttaagcatttcaaaagaataaattattctataaaaaagtcaaaaatttcaatttccgatgcattgatt 53919936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 233
Target Start/End: Original strand, 27346293 - 27346385
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataa 233  Q
    |||||||||| |||||||||| || || ||||||||||| ||||||||| |||| ||||   | |||||| |||| ||| ||||| |||||||    
T  27346293 cactctttaaggattctaaaaaaagaatttattttataaaaaagtcaaagattttgatttctggtgcatttattatacacatttttatgataa 27346385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 5388022 - 5387947
Alignment:
Q  139 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatt 214  Q
    |||||| | |||||||| |||||||| |||||||||||  | ||| | ||||||||||||| || |||||||||||    
T  5388022 gacactttataaagattttaaaagaagaaattattttaataaaaaattaaatatttcgattttcaatgcattgatt 5387947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 51105918 - 51106020
Alignment:
Q  142 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 241  Q
    |||||||||| ||||||||| ||  ||||||| | ||| ||||||||||||||  ||| || || ||  |||||| ||||||||||| |  |||||||||    
T  51105918 actctttaaatattctaaaataaacaattattatttaaaaaagtcaaatattttaattttcaatacacggattacgcatattttcataaatagttactat 51106017  T
Q  242 tta 244  Q
    |||    
T  51106018 tta 51106020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 27707003 - 27706954
Alignment:
Q  146 tttaaagattctaaaagaataaattattttataataaagtcaaatatttc 195  Q
    ||||| |||||||||| || |||| ||||||||| |||||||||||||||    
T  27707003 tttaatgattctaaaataagaaatcattttataagaaagtcaaatatttc 27706954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 247
Target Start/End: Original strand, 27981368 - 27981477
Alignment:
Q  139 gacactctttaaagattct-aaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagtta 237  Q
    ||||||||||||| ||| | |||| || |||||| ||||| | ||| | ||||||||| ||| || || |||| ||||||||||||| |||   ||||||    
T  27981368 gacactctttaaaaatttttaaaaaaaaaaattaatttatgaaaaaattaaatatttcaattttcaatacattaattacacatatttacatacaaagtta 27981467  T
Q  238 ctatttaaag 247  Q
    ||||||||||    
T  27981468 ctatttaaag 27981477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 44088211 - 44088272
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat 177  Q
    ||||||||||| ||||||||||   || | |||||| |||||||||||| ||||||||||||    
T  44088211 gtcttgttaacgagtgcctccggagcaatttttaaaaattctaaaagaagaaattattttat 44088272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 245
Target Start/End: Complemental strand, 52650826 - 52650697
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| ||||||||||  |||||||||||| || |||||  || |||||||| | ||  || ||||||  |||| ||| || || || ||||||    
T  52650826 gtcttgttaacgagtgcctccggaacactctttaaacatgctaaattaagaaattattctttacaaatgtcaaaattttcaattttcaattcactgatta 52650727  T
Q  216 cacatattttcatgataagttactatttaa 245  Q
    ||||  ||||||| | || |||||||||||    
T  52650726 cacaatttttcataaaaaattactatttaa 52650697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 11875539 - 11875452
Alignment:
Q  140 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 228  Q
    ||||||||||||| || ||||| || |||||||||||||  ||| | ||||||||  ||| || |||||||||||| ||| ||||||||    
T  11875539 acactctttaaagcttttaaaaaaagaaattattttatacaaaaattaaatattt-aattttcaatgcattgattatacacattttcat 11875452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 215
Target Start/End: Complemental strand, 23230372 - 23230272
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgatt 214  Q
    ||||| ||||| |||| ||||||||||||||||||  |||| ||||| | ||||||||  || || ||||| |||| |||| ||| || |||||||||||    
T  23230372 gtcttattaacgagtgtctccgagacactctttaagcattccaaaaggagaaattattccatgaaaaaagttaaatgtttcaattttcaatgcattgatt 23230273  T
Q  215 a 215  Q
    |    
T  23230272 a 23230272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 47560596 - 47560707
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| |||| || |||||||||||||||  |||| |||| ||  ||||||||| ||| ||| |||||| ||| |||| |  || |||||||||    
T  47560596 gtcttgttaacgagtgtcttcgagacactctttaatcattccaaaataagcaattatttt-taaaaaaatcaaatgttttgatttttaatacattgatta 47560694  T
Q  216 cacatattttcat 228  Q
    |||  ||||||||    
T  47560695 cacgcattttcat 47560707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 9e-42; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 116 - 262
Target Start/End: Original strand, 34758899 - 34759045
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| |||||||||| | |||||||||| ||||| |||||||  ||||||||||||| ||||| ||||||||||| ||  |||||||||||||    
T  34758899 gtcttgttaacgagtgcctccggggcactctttaaggattcaaaaagaagtaattattttataaaaaagtgaaatatttcgactcctgatgcattgatta 34758998  T
Q  216 cacatattttcatgataagttactatttaaaggccttaactagtgcc 262  Q
    || |||||| |||||||||||||||||||||| ||||||||||||||    
T  34758999 catatatttccatgataagttactatttaaagcccttaactagtgcc 34759045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 117 - 262
Target Start/End: Complemental strand, 54912133 - 54911988
Alignment:
Q  117 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattac 216  Q
    |||||||||| |||| | ||||  ||||||||||  |||| ||||||||||| |||||||||| ||||| ||||||||| |||   ||||||||||||||    
T  54912133 tcttgttaacgagtgtccccgaagcactctttaagaattccaaaagaataaactattttataacaaagttaaatatttcaatttcggatgcattgattac 54912034  T
Q  217 acatattttcatgataagttactatttaaaggccttaactagtgcc 262  Q
    ||||||||||||||||||||   ||||| |||||||||||||||||    
T  54912033 acatattttcatgataagttgtcatttataggccttaactagtgcc 54911988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 141 - 262
Target Start/End: Complemental strand, 18399271 - 18399149
Alignment:
Q  141 cactctttaaagattctaaaagaataaattatttt-ataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttact 239  Q
    |||||||||| ||||| ||||||| |||| ||||| |||| |||||||||||||||||||  ||||||||||||||||||  |||||||||||||||||     
T  18399271 cactctttaaggattccaaaagaagaaataatttttataaaaaagtcaaatatttcgatttccgatgcattgattacacaacttttcatgataagttacc 18399172  T
Q  240 atttaaaggccttaactagtgcc 262  Q
    ||||||| |||||||||| ||||    
T  18399171 atttaaaagccttaactaatgcc 18399149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 117 - 254
Target Start/End: Complemental strand, 30687214 - 30687077
Alignment:
Q  117 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattac 216  Q
    |||||||||| |||| ||| |||| ||||||||| ||||||||||||| ||||||| |||||| ||| ||||| | || |||| | ||||||||||||||    
T  30687214 tcttgttaacgagtgtctcagagatactctttaaggattctaaaagaagaaattatgttataaaaaaatcaaagagtttgatttttgatgcattgattac 30687115  T
Q  217 acatattttcatgataagttactatttaaaggccttaa 254  Q
    ||||||||||||||||| |||  |||||||| ||||||    
T  30687114 acatattttcatgataaattatcatttaaagaccttaa 30687077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 116 - 255
Target Start/End: Original strand, 27968170 - 27968307
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcatt-gatt 214  Q
    ||||||||||| |||||| ||| |||||| ||||| ||||| ||||||| |||| |||| |||| ||||||||| |||| |||| |||||||||| ||||    
T  27968170 gtcttgttaacgagtgcc-ccg-gacactttttaaggattccaaaagaagaaataattt-ataaaaaagtcaaagattttgattttcgatgcatttgatt 27968266  T
Q  215 acacatattttcatgataagttactatttaaaggccttaac 255  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  27968267 acacatattttcatgataagttaccatttaaaggccttaac 27968307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 116 - 255
Target Start/End: Complemental strand, 52340257 - 52340118
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaag-tcaaatatttcgattctcgatgcattgatt 214  Q
    ||||||||||| ||| | |||||| |||||||||| ||||| ||| ||| |||| ||||||||| |||  ||||| |||||||||  |||||||||||||    
T  52340257 gtcttgttaacgagttc-tccgaggcactctttaaggattccaaaggaagaaataattttataaaaaaaatcaaagatttcgatttccgatgcattgatt 52340159  T
Q  215 acacatattttcatgataagttactatttaaaggccttaac 255  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  52340158 acacatatttttatgataagttaccatttaaaggccttaac 52340118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 128 - 246
Target Start/End: Original strand, 38388694 - 38388812
Alignment:
Q  128 agtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 227  Q
    |||||||||| | |||| ||||||||||||||||||| |||||| ||||||| |||||||||||||| |||| ||  ||||||||||||||||||||| |    
T  38388694 agtgcctccggggcactatttaaagattctaaaagaagaaattaatttataaaaaagtcaaatattttgattttcattgcattgattacacatattttta 38388793  T
Q  228 tgataagttactatttaaa 246  Q
    | | || ||||||||||||    
T  38388794 taaaaatttactatttaaa 38388812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 116 - 227
Target Start/End: Original strand, 28434481 - 28434591
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| |||||  ||| |||||||||||| |||| ||| |||||||||||||| |||| |||||||||||||| |||| |||||||||||||||    
T  28434481 gtcttgttaacgagtgctcccgggacactctttaaggattttaagagaataaattatttcataa-aaagtcaaatattttgattttcgatgcattgatta 28434579  T
Q  216 cacatattttca 227  Q
    || | |||||||    
T  28434580 cataaattttca 28434591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 779810 - 779710
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| | ||||| |||||||| ||||  | ||||||| ||||    
T  779810 gtcttgttaacgagtgcctcc-agacactctttaaaaattctaaaagaataaattattttatgaaaaagttaaatattttgatttgcaatgcattcatta 779712  T
Q  216 ca 217  Q
    ||    
T  779711 ca 779710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 233
Target Start/End: Complemental strand, 38705086 - 38704969
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| |||||| ||||   |||||||||  |||| ||||||| |||||||||||||| || ||||||||||| ||||  ||||||||||||||    
T  38705086 gtcttgttaacgagtgcccccgaagtactctttaagaattcaaaaagaaaaaattattttataaaaatgtcaaatattttgatttccgatgcattgatta 38704987  T
Q  216 cacatattttcatgataa 233  Q
    |||||||||  |||||||    
T  38704986 cacatatttgtatgataa 38704969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 152 - 250
Target Start/End: Complemental strand, 7754871 - 7754772
Alignment:
Q  152 gattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggcc 250  Q
    ||||| ||||||| || | ||||||||| ||| |||||  |||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7754871 gattccaaaagaagaagtaattttataaaaaaagtcaacgatttcgatttccgatgcattgattagacatattttcatgataagttactatttaaaggcc 7754772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 4033026 - 4033138
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 240  Q
    |||| ||||| |||||||||| || |||||||||||||| ||| ||||| |||||||||  ||||||| |||||||||| ||||||||||||| ||   |    
T  4033026 cactttttaaggattctaaaaaaagaaattattttataaaaaaatcaaagatttcgatttccgatgca-tgattacacacattttcatgataaatttaca 4033124  T
Q  241 tttaaaggccttaa 254  Q
    |||||||| |||||    
T  4033125 tttaaaggacttaa 4033138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 163 - 254
Target Start/End: Complemental strand, 19898191 - 19898100
Alignment:
Q  163 aataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaa 254  Q
    ||||||||||||||||  ||| ||||||||||| ||| || ||||||||||||||||||||||||| | || |||| || |||||| |||||    
T  19898191 aataaattattttatataaaaatcaaatatttcaattttcaatgcattgattacacatattttcataaaaatttacaatgtaaaggtcttaa 19898100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 55110042 - 55110109
Alignment:
Q  161 agaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 228  Q
    |||| |||||||||||||| ||| ||||||||||||||| || |||||||||||||| ||||||||||    
T  55110042 agaaaaaattattttataaaaaaatcaaatatttcgattttcaatgcattgattacatatattttcat 55110109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 254
Target Start/End: Complemental strand, 25548333 - 25548196
Alignment:
Q  117 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgatta 215  Q
    |||||||||| ||| || |||| ||||||||||| || |||||||||| ||| |||||||||| ||| || ||||||||| |||    ||||||||||||    
T  25548333 tcttgttaacgagtacccccga-acactctttaaggactctaaaagaagaaaatattttataaaaaaagttaaatatttcaatttctaatgcattgatta 25548235  T
Q  216 cacatattttcatgataagttactatttaaaggccttaa 254  Q
    ||||||||||||| | || |||  ||||||||| |||||    
T  25548234 cacatattttcataaaaatttatcatttaaaggtcttaa 25548196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 43749581 - 43749507
Alignment:
Q  145 ctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacaca 219  Q
    |||||| |||||||||||||||||||||| ||| | ||||||||||||||| ||| || ||  ||||||||||||    
T  43749581 ctttaaggattctaaaagaataaattattctattaaaaagtcaaatatttcaattttctatatattgattacaca 43749507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 53433281 - 53433211
Alignment:
Q  157 taaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 227  Q
    |||||||| |||||||| ||||| ||||||||||||||  ||| ||||||||||||||||| | |||||||    
T  53433281 taaaagaagaaattattctataaaaaagtcaaatattttaattttcgatgcattgattacataaattttca 53433211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 1680566 - 1680511
Alignment:
Q  144 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 199  Q
    ||||||| ||||| |||||||||||||| ||||||| |||||||||||||| ||||    
T  1680566 tctttaaggattcaaaaagaataaattaatttataaaaaagtcaaatattttgatt 1680511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 2831538 - 2831629
Alignment:
Q  137 gagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 228  Q
    |||||||||||||| ||||| |||  || |||||||||| ||||||||||||||||||| ||| |  ||||| |||||| |||  |||||||    
T  2831538 gagacactctttaaggattccaaatcaagaaattattttttaataaagtcaaatatttcaattttaaatgcaatgattatacaagttttcat 2831629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 39976721 - 39976804
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 225  Q
    |||||||| || ||||||||| ||| ||||||||| ||| |||||||||| |||| ||| || || |||||||||||| ||||||    
T  39976721 cactctttgaacattctaaaataatcaattatttt-taaaaaagtcaaatgtttctattttcaatacattgattacacgtatttt 39976804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 54955859 - 54955783
Alignment:
Q  161 agaataaattattttata-ataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagtt 236  Q
    |||||||||||||||||| | ||| |||||||||| |||| | |||||||  |||||| |||||||||||| |||||    
T  54955859 agaataaattattttatagaaaaaatcaaatattttgatttttgatgcataaattacatatattttcatgaaaagtt 54955783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 11404700 - 11404754
Alignment:
Q  140 acactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 194  Q
    ||||||||| ||||||  |||| ||||||||||||||||| ||||| ||||||||    
T  11404700 acactcttttaagattaaaaaaaaataaattattttataaaaaagttaaatattt 11404754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 40546348 - 40546398
Alignment:
Q  167 aattattttataataaagtcaaatatttcgattctcgatgcattgattaca 217  Q
    ||||||||| ||| |||||||||||||||||||  | ||||||||||||||    
T  40546348 aattattttttaaaaaagtcaaatatttcgatttccaatgcattgattaca 40546398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 29497285 - 29497248
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaaga 153  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  29497285 gtcttgttaacgagtgcctccgagacattctttaaaga 29497248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 29611990 - 29612035
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaa 161  Q
    ||||||||||| |||||| ||| ||||||||||||| |||||||||    
T  29611990 gtcttgttaacgagtgcccccgggacactctttaaacattctaaaa 29612035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 21490682 - 21490626
Alignment:
Q  172 ttttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 228  Q
    |||| ||| ||||||||||||||| ||| || || ||||||| ||||||||||||||    
T  21490682 ttttgtaaaaaagtcaaatatttcaattttcaattcattgatgacacatattttcat 21490626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 30464056 - 30463992
Alignment:
Q  153 attctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 217  Q
    |||| ||||||| |||||||| ||||| ||||||||| ||||| ||| |  ||||||||||||||    
T  30464056 attccaaaagaagaaattattctataaaaaagtcaaacatttcaatttttaatgcattgattaca 30463992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 37775411 - 37775371
Alignment:
Q  159 aaagaataaattattttataataaagtcaaatatttcgatt 199  Q
    |||||| |||||||||||||| ||||| |||||||||||||    
T  37775411 aaagaagaaattattttataaaaaagttaaatatttcgatt 37775371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 116 - 259
Target Start/End: Original strand, 8247037 - 8247180
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| |||||| ||| |||||||||||| ||||| ||||||| |||| ||||||||| |||||||||||||||||||  ||||||||||||||    
T  8247037 gtcttgttaacgagtgcccccgtgacactctttaaggattccaaaagaagaaataattttataaaaaagtcaaatatttcgatttccgatgcattgatta 8247136  T
Q  216 cacatattttcatgataagttactatttaaaggccttaactagt 259  Q
     |||  ||||||||||||||||| |||||||| |||||||||||    
T  8247137 tacaacttttcatgataagttaccatttaaagaccttaactagt 8247180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 116 - 261
Target Start/End: Original strand, 3263717 - 3263862
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| ||||| |||| | ||||||||||  |||  ||||||| |||| ||||||||| ||||||||| |||||||||  ||||||||||||||    
T  3263717 gtcttgttaacgagtgcttccggggcactctttaagaatttcaaaagaagaaatcattttataaaaaagtcaaagatttcgatttccgatgcattgatta 3263816  T
Q  216 cacatattttcatgataagttactatttaaaggccttaactagtgc 261  Q
    |||||||||| |||||||||||| |||||||| |||||||||||||    
T  3263817 cacatattttaatgataagttaccatttaaagaccttaactagtgc 3263862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 119 - 262
Target Start/End: Original strand, 19692696 - 19692840
Alignment:
Q  119 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgattaca 217  Q
    |||||||| |||| | ||| | |||||||||||||||  ||||||| |||||| ||||||| ||| |||||||||||||||| || ||||||||||||||    
T  19692696 ttgttaacgagtgtccccggggcactctttaaagatttcaaaagaagaaattaatttataaaaaaagtcaaatatttcgattttcaatgcattgattaca 19692795  T
Q  218 catattttcatgataagttactatttaaaggccttaactagtgcc 262  Q
    |||| ||| |||||||||||| |||||||||||||||| ||||||    
T  19692796 cataatttgatgataagttacaatttaaaggccttaaccagtgcc 19692840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 144 - 255
Target Start/End: Complemental strand, 5356406 - 5356295
Alignment:
Q  144 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 243  Q
    ||||||| ||| | |||| || |||||| ||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  5356406 tctttaaggataccaaaataagaaattaatttataaaaacgtcaaatatttcgattttcgatgcattgattacacatattttcatgataagttaccattt 5356307  T
Q  244 aaaggccttaac 255  Q
    |||| |||||||    
T  5356306 aaagaccttaac 5356295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 142 - 262
Target Start/End: Original strand, 35395184 - 35395304
Alignment:
Q  142 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 241  Q
    ||||||||| ||||| ||||||| ||| |||||||||| ||||||||||||||  ||| |||||||||||||||||||||||||||||||||||| | ||    
T  35395184 actctttaaggattccaaaagaagaaactattttataaaaaagtcaaatattttaattttcgatgcattgattacacatattttcatgataagttgccat 35395283  T
Q  242 ttaaaggccttaactagtgcc 262  Q
    | |||||  ||||| ||||||    
T  35395284 taaaaggtgttaacgagtgcc 35395304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 116 - 261
Target Start/End: Original strand, 10051700 - 10051845
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| |||| | |  || |||||||||| |||| |||||||| |||| ||||||||| ||||||||||||||  |||  ||||||||||||||    
T  10051700 gtcttgttaacgagtgtccctaaggcactctttaaggattttaaaagaagaaataattttataaaaaagtcaaatatttatatttccgatgcattgatta 10051799  T
Q  216 cacatattttcatgataagttactatttaaaggccttaactagtgc 261  Q
     |||  ||||||| ||||||||| ||||||||| ||||||||||||    
T  10051800 tacaacttttcataataagttaccatttaaaggtcttaactagtgc 10051845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 116 - 257
Target Start/End: Original strand, 28793305 - 28793446
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| ||||| ||||   | |||||||| ||||| ||||||| |||| ||||||||| |||||||||||||||||||  ||||||||| ||||    
T  28793305 gtcttgttaacgagtgcttccggtgcgctctttaaggattccaaaagaagaaatgattttataaaaaagtcaaatatttcgatttccgatgcattaatta 28793404  T
Q  216 cacatattttcatgataagttactatttaaaggccttaacta 257  Q
    || ||||||| ||||||| |||| |||||||  |||||||||    
T  28793405 catatatttttatgataatttaccatttaaataccttaacta 28793446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 118 - 255
Target Start/End: Complemental strand, 1354481 - 1354345
Alignment:
Q  118 cttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 217  Q
    ||||||||| |||||||||||||||||||| | | ||||||||| || |||||||||||||| ||||| |||||||||||||    ||  |||||||| |    
T  1354481 cttgttaacaagtgcctccgagacactcttaaga-attctaaaaaaagaaattattttataaaaaagttaaatatttcgatttctaatatattgattata 1354383  T
Q  218 catattttcatgataagttactatttaaaggccttaac 255  Q
     ||||||||||||||| ||||  |||||||||||||||    
T  1354382 tatattttcatgataatttaccttttaaaggccttaac 1354345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 262
Target Start/End: Original strand, 22473432 - 22473551
Alignment:
Q  144 tctttaaagattctaaaagaataaattattttataataaag-tcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatt 242  Q
    ||||||| ||||  ||||||| |||||||||||||| |||  ||||||||||  |||   ||||||||||||||||||||||||| |||||||||| |||    
T  22473432 tctttaaggatttcaaaagaagaaattattttataaaaaaaatcaaatattttaatttctgatgcattgattacacatattttcacgataagttaccatt 22473531  T
Q  243 taaaggccttaactagtgcc 262  Q
    ||||| ||||||||||||||    
T  22473532 taaagcccttaactagtgcc 22473551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 237
Target Start/End: Original strand, 21582367 - 21582463
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagtta 237  Q
    |||| ||||| ||||| |||||||||||||||||||||| | |||||||||||||||||   ||| || |||| ||||| |||||||||||||||||    
T  21582367 cactttttaaggattccaaaagaataaattattttataaaatagtcaaatatttcgatttctgatacaatgatcacacacattttcatgataagtta 21582463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 123 - 225
Target Start/End: Original strand, 14042440 - 14042542
Alignment:
Q  123 taaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatat 222  Q
    |||| |||| ||||| || |||||||||||||||||||| ||||||||||| | ||| |||||||||||||| ||||  | |||||||||||| ||| ||    
T  14042440 taacgagtgtctccgggatactctttaaagattctaaaataataaattattatttaaaaaagtcaaatattttgatttccaatgcattgattatacaaat 14042539  T
Q  223 ttt 225  Q
    |||    
T  14042540 ttt 14042542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 239
Target Start/End: Original strand, 31889611 - 31889709
Alignment:
Q  142 actctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttact 239  Q
    ||||||||| ||||||||||||| |||||| ||||||| ||| || ||||||||| |||    ||||||||||||||||||||||||| | ||||||||    
T  31889611 actctttaacgattctaaaagaagaaattaatttataaaaaaagtaaaatatttcaatttctaatgcattgattacacatattttcataaaaagttact 31889709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 4725979 - 4725897
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 199  Q
    ||||||||||| |||| | |||| ||||| ||||| ||||  |||||||||||||||||||||| ||||||||| |||||||||    
T  4725979 gtcttgttaacgagtgtccccgaaacactgtttaaggatttcaaaagaataaattattttataa-aaagtcaaagatttcgatt 4725897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 257
Target Start/End: Complemental strand, 142436 - 142350
Alignment:
Q  171 attttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaacta 257  Q
    ||||||||| ||| ||||||||||| |||   ||| ||||||||||||||| ||| ||||||||||||  |||||||| ||||||||    
T  142436 attttataaaaaaatcaaatatttcaatttctgatacattgattacacataattttatgataagttacattttaaagggcttaacta 142350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 22871913 - 22871967
Alignment:
Q  139 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatt 193  Q
    |||||||||||| ||||||||||||| ||| |||||||||| |||||||||||||    
T  22871913 gacactctttaaggattctaaaagaagaaaatattttataaaaaagtcaaatatt 22871967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 225
Target Start/End: Original strand, 3758194 - 3758279
Alignment:
Q  140 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 225  Q
    |||||||||||| ||| ||||| ||| ||||||| | ||| ||||||||||||||||||| || ||||||||| || |||| ||||    
T  3758194 acactctttaaacattttaaaataatcaattattctttaaaaaagtcaaatatttcgattttcaatgcattgaatatacatttttt 3758279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 26663642 - 26663714
Alignment:
Q  153 attctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 225  Q
    ||||||||| || |||||||||| ||| |||||||||||||||||||  | ||| ||||||||||||| ||||    
T  26663642 attctaaaataagaaattattttttaaaaaagtcaaatatttcgatttccaatgtattgattacacatttttt 26663714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 225
Target Start/End: Original strand, 26935237 - 26935309
Alignment:
Q  153 attctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 225  Q
    ||||||||| || |||||||||| ||| |||||||||||||||||||  | ||| ||||||||||||| ||||    
T  26935237 attctaaaataagaaattattttttaaaaaagtcaaatatttcgatttccaatgtattgattacacatttttt 26935309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 254
Target Start/End: Complemental strand, 14475133 - 14474998
Alignment:
Q  119 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 218  Q
    |||||||| ||||| |||| | | ||||| ||  ||| |||||||| |||||||| ||||| || |||||||||||| |||   ||||| |||||||||     
T  14475133 ttgttaacaagtgcttccggggctctcttcaagcattttaaaagaagaaattattctataaaaatgtcaaatatttcaatttcagatgctttgattacat 14475034  T
Q  219 atattttcatgataagttactatttaaaggccttaa 254  Q
    | |||||||  | |||||||||||| |||| |||||    
T  14475033 aaattttcaaaaaaagttactatttgaaggtcttaa 14474998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 27650944 - 27650866
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 194  Q
    ||||||||||| ||| ||||||  |||||||||||| |||| |||| || |||||||| ||||| ||||| ||||||||    
T  27650944 gtcttgttaacgagtacctccggaacactctttaaacattccaaaaaaagaaattattatataaaaaagttaaatattt 27650866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 37976444 - 37976497
Alignment:
Q  142 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttc 195  Q
    |||||||||| |||||||||||| ||||||||| |||| ||| |||||||||||    
T  37976444 actctttaaacattctaaaagaagaaattatttcataaaaaaatcaaatatttc 37976497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 12933327 - 12933381
Alignment:
Q  140 acactctttaaagattctaaaagaataaattattttataataaagtcaaatattt 194  Q
    |||||||| || ||||  |||| ||||||||||||||||| ||||||||||||||    
T  12933327 acactcttcaacgatttcaaaataataaattattttataagaaagtcaaatattt 12933381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 199
Target Start/End: Complemental strand, 24241256 - 24241210
Alignment:
Q  153 attctaaaagaataaattattttataataaagtcaaatatttcgatt 199  Q
    |||||||||||| |||||||||||  | |||||||||||||||||||    
T  24241256 attctaaaagaaaaaattattttaataaaaagtcaaatatttcgatt 24241210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 24241096 - 24241039
Alignment:
Q  168 attattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 225  Q
    |||||||||||| ||||||||||||||| ||| |  || ||||||||| |||||||||    
T  24241096 attattttataaaaaagtcaaatatttcaatttttaatacattgattatacatatttt 24241039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 263
Target Start/End: Original strand, 43145883 - 43145943
Alignment:
Q  203 gatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcct 263  Q
    ||||||||||||||| | |||||||  | || |||||||||||||| ||||| ||||||||    
T  43145883 gatgcattgattacataaattttcaaaaaaaattactatttaaaggtcttaaatagtgcct 43145943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 116 - 263
Target Start/End: Original strand, 8789826 - 8789973
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| ||| | | || |||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||   |||||||||||||    
T  8789826 gtcttgttaacgagtactttcgggacactctttaaagattctaaaagaagaaattattttataaaaaagttaaatattttgatttctgatgcattgatta 8789925  T
Q  216 cacatattttcatgataagttactatttaaaggccttaactagtgcct 263  Q
    |||||||||||||| ||||||||  ||||||| ||||||| |||||||    
T  8789926 cacatattttcatgttaagttaccctttaaagaccttaaccagtgcct 8789973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 116 - 261
Target Start/End: Complemental strand, 44941216 - 44941072
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| |||||| | |||||||||||||| ||||||||||||| ||| ||| |||||| ||||| ||| |||||||||  ||||||||||||||    
T  44941216 gtcttgttaacgagtgcc-ctgagacactctttaaggattctaaaagaagaaagtatgttataaaaaagttaaagatttcgatttccgatgcattgatta 44941118  T
Q  216 cacatattttcatgataagttactatttaaaggccttaactagtgc 261  Q
    || |||||||| |||||| |||| ||||||||||||||||||||||    
T  44941117 catatattttcctgataaattaccatttaaaggccttaactagtgc 44941072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 116 - 259
Target Start/End: Complemental strand, 20683133 - 20682990
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| |||||| ||| |||||||||||| ||||| ||||||| |||  ||||||||| ||| |||||||||||||||  ||||||||||||||    
T  20683133 gtcttgttaacgagtgcccccgggacactctttaaggattccaaaagaagaaaagattttataaaaaaatcaaatatttcgatttccgatgcattgatta 20683034  T
Q  216 cacatattttcatgataagttactatttaaaggccttaactagt 259  Q
    |||||||||| |||||||||||| || ||||  | |||||||||    
T  20683033 cacatatttttatgataagttaccatataaaaactttaactagt 20682990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 141 - 255
Target Start/End: Complemental strand, 8773784 - 8773670
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 240  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||   ||||||||||||||| ||||||||||| ||||||||      
T  8773784 cactctttaaagattctaaaagaagaaattattttataaaaaagtcaaatattttgatttctgatgcattgattacatatattttcatgttaagttaccc 8773685  T
Q  241 tttaaaggccttaac 255  Q
    ||||||| |||||||    
T  8773684 tttaaagaccttaac 8773670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 139 - 237
Target Start/End: Complemental strand, 4238438 - 4238341
Alignment:
Q  139 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagtta 237  Q
    |||||||||||| ||||| ||||||| |||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  4238438 gacactctttaaggattcaaaaagaagaaattattttataaaaaaatcaaatatttcgattttcgatgcattgattacacatattttcat-ataagtta 4238341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 139 - 262
Target Start/End: Complemental strand, 18053130 - 18053008
Alignment:
Q  139 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttac 238  Q
    |||||||||||| ||||  ||||||| |||||||||||||| |||||||||||||| ||||  |||||||||||||| ||||| ||||||||||| ||||    
T  18053130 gacactctttaaggatttcaaaagaagaaattattttataaaaaagtcaaatattttgatttccgatgcattgattatacatactttcatgataaattac 18053031  T
Q  239 tatttaaaggccttaactagtgcc 262  Q
      ||||||||||||||||| ||||    
T  18053030 -ctttaaaggccttaactaatgcc 18053008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 42945125 - 42945012
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 240  Q
    |||| ||||| |||| |||||||| | |||||||||| | ||| |||||||||||||||  |  ||||||||||||||||||||| ||||||| ||||||    
T  42945125 cactttttaaggattttaaaagaaaacattattttattaaaaactcaaatatttcgatttccagtgcattgattacacatatttttatgataatttacta 42945026  T
Q  241 tttaaaggccttaa 254  Q
    ||||||||||||||    
T  42945025 tttaaaggccttaa 42945012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 6761862 - 6761751
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| ||||| |||||| ||||||||||  |||| |||||||||||| ||| ||||| ||||||||||||||| |||  | ||||||||||||    
T  6761862 gtcttgttaacaagtgcttccgaggcactctttaagcattccaaaagaataaatcattctataaaaaagtcaaatatttcaatttccaatgcattgatta 6761763  T
Q  216 cacatattttca 227  Q
    || | |||||||    
T  6761762 cataaattttca 6761751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 254
Target Start/End: Complemental strand, 2393148 - 2393038
Alignment:
Q  144 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 243  Q
    ||||||| ||||||||||||| |||||| ||||||| |||||||||||||| ||||||| |  |||||||| ||||| |||||||   |||||||||| |    
T  2393148 tctttaaggattctaaaagaagaaattaatttataaaaaagtcaaatattttgattctcaagacattgatttcacatgttttcatacaaagttactatat 2393049  T
Q  244 aaaggccttaa 254  Q
    ||||| |||||    
T  2393048 aaaggtcttaa 2393038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 141 - 255
Target Start/End: Complemental strand, 34546379 - 34546265
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 240  Q
    |||||||| | ||||| ||| ||| |||||| ||||||| ||||||||||| |||||||   ||||||||||||||||| |||||||||||||||||  |    
T  34546379 cactctttgaggattccaaatgaagaaattaatttataaaaaagtcaaatacttcgatttctgatgcattgattacacacattttcatgataagttatca 34546280  T
Q  241 tttaaaggccttaac 255  Q
    ||||| || ||||||    
T  34546279 tttaatggtcttaac 34546265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 254
Target Start/End: Original strand, 42966938 - 42967066
Alignment:
Q  128 agtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgattacacatattttc 226  Q
    |||||||||||||||||||||||  || ||||||||| ||||||||| |||| ||| || ||||||||| |||| |||||||||||||||| | ||||||    
T  42966938 agtgcctccgagacactctttaagaatactaaaagaagaaattatttcataaaaaaagttaaatatttcaattcccgatgcattgattacataaattttc 42967037  T
Q  227 atgataag-ttactatttaaaggccttaa 254  Q
    |  | ||  |||||||||||||| |||||    
T  42967038 aaaaaaaaattactatttaaaggtcttaa 42967066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 1070568 - 1070639
Alignment:
Q  154 ttctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttc 226  Q
    ||||||||||||| |||||||||||||||||| |||||||| |||| || ||| |||||||||||||||||||    
T  1070568 ttctaaaagaatatattattttataataaagtaaaatattttgattttcaatg-attgattacacatattttc 1070639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 261
Target Start/End: Complemental strand, 5962101 - 5961954
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaa-taaattattttat-aataaagtcaaatatttcgattctcgatgcattgat 213  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||||||  ||| ||||  || || ||| | ||||||||| |||  | ||||||||||    
T  5962101 gtcttgttaacgagtgcctccgagacactctttaagcattctaaaagaagaaaaatattccataaaaaaaattaaatatttcaatttccaatgcattgat 5962002  T
Q  214 tacacatattttcatgataagttactatttaaaggccttaactagtgc 261  Q
    |||| | |||||||  |  |||||||||||||||| ||||| ||||||    
T  5962001 tacataaattttcaaaaacagttactatttaaaggtcttaaatagtgc 5961954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 230
Target Start/End: Original strand, 3882586 - 3882700
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| ||||||  || | ||||||||||  ||||||||| ||  ||||||| | ||| || ||||||||||||| || || ||||||||||||    
T  3882586 gtcttgttaacgagtgccctcggggcactctttaagcattctaaaataagcaattattctttaaaaaggtcaaatatttcggttttcaatgcattgatta 3882685  T
Q  216 cacatattttcatga 230  Q
    |||| ||||||||||    
T  3882686 cacacattttcatga 3882700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 433643 - 433551
Alignment:
Q  119 ttgttaaccagtgcctccgag-acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattg 211  Q
    |||||||| |||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||| ||||| |||||||| |||| | |||||||||    
T  433643 ttgttaacgagtgcc-ccgaggacactctttaaggattccaaaagaataaattaatttataaaaaagttaaatattttgatttttgatgcattg 433551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 8898913 - 8898861
Alignment:
Q  140 acactctttaaagattctaaaagaataaattattttataataaagtcaaatat 192  Q
    |||| |||||| |||||||||| || |||||||||||||||||||||||||||    
T  8898913 acaccctttaatgattctaaaataagaaattattttataataaagtcaaatat 8898861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 18227092 - 18227204
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| |||| |||||  |||||||||||| ||| ||||| ||  ||||||| |  |  ||||||||||||||||||| || ||||||||||||    
T  18227092 gtcttgttaacgagtgtctccggaacactctttaaacattataaaataagtaattattcttcataaaagtcaaatatttcgattttcaatgcattgatta 18227191  T
Q  216 cacatattttcat 228  Q
     | | ||||||||    
T  18227192 aatacattttcat 18227204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 2826066 - 2825983
Alignment:
Q  142 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 225  Q
    |||||||||  || |||||| || |||||||||| ||| ||||| |||||||||||||  | |||||||||||||||| |||||    
T  2826066 actctttaagcatactaaaataagaaattattttttaaaaaagtaaaatatttcgatttccaatgcattgattacacacatttt 2825983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 13442703 - 13442636
Alignment:
Q  128 agtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttc 195  Q
    |||||||||||   ||||||||||||||| |||||||||||||||||||| || ||||| |||||||||    
T  13442703 agtgcctccgaagtactctttaaagattc-aaaagaataaattattttataaaaaaagttaaatatttc 13442636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 228
Target Start/End: Original strand, 35228732 - 35228816
Alignment:
Q  144 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 228  Q
    ||||||| ||||  ||||||| |||||||||| ||| ||  |||||||||||||||    ||||||| |||||||||||||||||    
T  35228732 tctttaaggatttcaaaagaagaaattattttctaaaaagatcaaatatttcgatttctaatgcatttattacacatattttcat 35228816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 3199599 - 3199541
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 199  Q
    ||||||||||  ||||||||| || |||||||||||||| ||| |||||||||| ||||    
T  3199599 cactctttaataattctaaaataagaaattattttataaaaaattcaaatattttgatt 3199541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 246
Target Start/End: Original strand, 7271769 - 7271880
Alignment:
Q  139 gacactctttaaagattctaaaagaataaattattttataataaa----gtcaaatatttcgattctcgatgcattgattacacatattttcatgataag 234  Q
    |||||||||||| |||||||||| || ||| ||| |||||| |||    |||||||||||  |||  | |||||||||||||| |||||||||| | |||    
T  7271769 gacactctttaaggattctaaaaaaagaaactatcttataaaaaaaaaagtcaaatatttttatttccaatgcattgattacatatattttcataaaaag 7271868  T
Q  235 ttactatttaaa 246  Q
    |||  |||||||    
T  7271869 ttatcatttaaa 7271880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 254
Target Start/End: Complemental strand, 14102435 - 14102297
Alignment:
Q  117 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaa-gtcaaatatttcgattctcgatgcattgatta 215  Q
    |||||||||| ||||||||||   ||||||||||| || | |||| || ||||||||| | || ||| || |||||||||||||  | || |||||||||    
T  14102435 tcttgttaacgagtgcctccggagcactctttaaacatgccaaaataagaaattatttaaaaaaaaaagttaaatatttcgatttccaatacattgatta 14102336  T
Q  216 cacatattttcatgataagttactatttaaaggccttaa 254  Q
    ||||  ||||||| |  |||||||| ||| || ||||||    
T  14102335 cacactttttcataaatagttactacttatagtccttaa 14102297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 31448400 - 31448315
Alignment:
Q  140 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 225  Q
    ||||||||||||||||   |||||| |||||||||||||| ||| | ||| |||| ||||  |||| |||| ||||| ||||||||    
T  31448400 acactctttaaagatttctaaagaagaaattattttataaaaaatttaaaaattttgatttccgatacattaattactcatatttt 31448315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 45212057 - 45212110
Alignment:
Q  146 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgatt 199  Q
    ||||| ||||||||||  |||||||||||||||| ||| |||||||||| ||||    
T  45212057 tttaaggattctaaaaagataaattattttataaaaaaatcaaatattttgatt 45212110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 33276005 - 33275918
Alignment:
Q  140 acactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 228  Q
    |||||||||||  ||||||||| || |||||||||| ||| ||||| ||||||||| ||| || || ||| || |||||| ||||||||    
T  33276005 acactctttaagcattctaaaacaagaaattattttttaaaaaagttaaatatttcaattttcaatacataga-tacacacattttcat 33275918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 142 - 262
Target Start/End: Complemental strand, 30413030 - 30412910
Alignment:
Q  142 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 241  Q
    ||||||||| ||||  ||||||| ||| |||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||||| |||||||    
T  30413030 actctttaaggatttcaaaagaagaaactattttatgataaagtcaaatatttcgattcccgatgcattgattatacatattttcgtgataaattactat 30412931  T
Q  242 ttaaaggccttaactagtgcc 262  Q
    |||||||||||||| ||||||    
T  30412930 ttaaaggccttaaccagtgcc 30412910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 116 - 262
Target Start/End: Original strand, 8170001 - 8170147
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| ||| |  |||  ||||||||||| ||||| ||||||| |||||||||||||| |||||||||||||| ||||  |||| |||||||||    
T  8170001 gtcttgttaacaagtactcccggaacactctttaaggattccaaaagaagaaattattttataaaaaagtcaaatattttgatttccgatacattgatta 8170100  T
Q  216 cacatattttcatgataagttactatttaaaggccttaactagtgcc 262  Q
     |||||| |||||||||||||||| ||||||| ||||||||||||||    
T  8170101 tacatatgttcatgataagttactttttaaagaccttaactagtgcc 8170147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 152 - 262
Target Start/End: Original strand, 48137789 - 48137899
Alignment:
Q  152 gattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggcct 251  Q
    ||||| ||||||| |||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| ||||||| |||||||||||| || |    
T  48137789 gattccaaaagaagaaattattttataaaaaagtcaaatattttgattttcgatgcattgattacacatatttttatgataaattactatttaaaagcat 48137888  T
Q  252 taactagtgcc 262  Q
    |||||||||||    
T  48137889 taactagtgcc 48137899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 141 - 235
Target Start/End: Original strand, 42493703 - 42493798
Alignment:
Q  141 cactctttaaagattctaaaagaataaattatttt-ataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagt 235  Q
    |||||||||| ||||| ||||||| |||||||||| |||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  42493703 cactctttaaggattccaaaagaagaaattattttgataaaaaagtcaaatattttgattttcgatgcattgattacacatattttcatgataagt 42493798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 116 - 247
Target Start/End: Original strand, 47507580 - 47507711
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| |||| ||||| | |||||||||| ||||||||||||| |||| ||||||||| ||| ||||| ||||| |||  ||||| ||||||||    
T  47507580 gtcttgttaacgagtgtctccggggcactctttaaggattctaaaagaagaaataattttataaaaaaatcaaagatttcaatttccgatgtattgatta 47507679  T
Q  216 cacatattttcatgataagttactatttaaag 247  Q
    ||||| ||||||||| ||||||| ||||||||    
T  47507680 cacattttttcatgagaagttaccatttaaag 47507711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 120 - 258
Target Start/End: Original strand, 38452146 - 38452283
Alignment:
Q  120 tgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacaca 219  Q
    ||||||| |||||| |||| ||| ||||||| ||||  ||||||| |||||||||||||| ||||||||||||||| |||  |||||||||| |||||||    
T  38452146 tgttaacgagtgcccccga-acattctttaaggatttaaaaagaagaaattattttataaaaaagtcaaatatttcaatttccgatgcattggttacaca 38452244  T
Q  220 tattttcatgataagttactatttaaaggccttaactag 258  Q
    ||||||||| |||| |||   ||||||||||||||||||    
T  38452245 tattttcataataaattatcttttaaaggccttaactag 38452283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 2964049 - 2964146
Alignment:
Q  146 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 243  Q
    ||||||||||||||||||| |||||||||||||| ||| | ||| |||| |||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  2964049 tttaaagattctaaaagaagaaattattttataaaaaaattaaaaattttgattttcgatacattgattacacatatttttatgataagttactattt 2964146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 116 - 248
Target Start/End: Original strand, 16878677 - 16878809
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    |||||||||||  |||  |||| |||||||||||||||||| | ||  | ||||||||| |||| ||||| |||||||||||||||| ||||||||||||    
T  16878677 gtcttgttaacaggtgtttccgggacactctttaaagattcaataaagagaaattatttcataaaaaagttaaatatttcgattctcaatgcattgatta 16878776  T
Q  216 cacatattttcatgataagttactatttaaagg 248  Q
    || ||||||| |||  |||||||||||||||||    
T  16878777 caaatatttttatgcaaagttactatttaaagg 16878809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 143 - 254
Target Start/End: Complemental strand, 44391537 - 44391426
Alignment:
Q  143 ctctttaaagattctaaaagaataaattattttataataaagtc-aaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 241  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |  |||||||||||| | ||||||||||   ||||||| ||    
T  44391537 ctctttaaagattctaaaagaataaattattttataa-aaagtcaaaatatttcgatttttaatgcattgattatatatattttcatacaaagttaccat 44391439  T
Q  242 ttaaaggccttaa 254  Q
    ||||||| |||||    
T  44391438 ttaaaggtcttaa 44391426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 46684626 - 46684550
Alignment:
Q  182 aagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactag 258  Q
    |||||||||||||||||| |||| |||||||||||| ||||||||||||||| |||| |||||||||||||||||||    
T  46684626 aagtcaaatatttcgattttcgacgcattgattacatatattttcatgataaattaccatttaaaggccttaactag 46684550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 5248088 - 5248179
Alignment:
Q  139 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatga 230  Q
    |||| ||||||| ||||  ||||||| |||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||| ||||    
T  5248088 gacattctttaaggatttcaaaagaagaaattattttataaaaaagtcaaatatttcgattattgatgcattgattacacatatttttatga 5248179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 233
Target Start/End: Original strand, 2741168 - 2741260
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataa 233  Q
    |||||||||| |||| |||||||| |||||||||||| | ||| |||||||||| ||||  ||||||||||||||||||||||||||| ||||    
T  2741168 cactctttaaggattttaaaagaaaaaattattttattaaaaaatcaaatattttgatttccgatgcattgattacacatattttcataataa 2741260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 257
Target Start/End: Complemental strand, 15034911 - 15034793
Alignment:
Q  139 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcatt-gattacacatattttcatgataagtta 237  Q
    |||||||||||| ||||| || | || ||| |||||||||| ||||||||||||||||||   | ||||||| |||||||| ||||||||| ||||||||    
T  15034911 gacactctttaaggattccaagaaaagaaaatattttataa-aaagtcaaatatttcgatatccaatgcatttgattacacgtattttcataataagtta 15034813  T
Q  238 ctatttaaaggccttaacta 257  Q
    |  |||||||||||||||||    
T  15034812 ccttttaaaggccttaacta 15034793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 252
Target Start/End: Original strand, 43670409 - 43670517
Alignment:
Q  144 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 243  Q
    |||||||||||| |||| ||| |||| ||||||||| ||| ||||| |||| |||| |||||||| |||||||| || |||| ||||||| |||| ||||    
T  43670409 tctttaaagattttaaatgaagaaataattttataaaaaaatcaaagattttgattttcgatgcactgattacatatgtttttatgataaattaccattt 43670508  T
Q  244 aaaggcctt 252  Q
    |||| ||||    
T  43670509 aaagacctt 43670517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 47305592 - 47305516
Alignment:
Q  187 aaatatttcga-ttctcgatgcattgattacacatattttcatgataagttactatttaaaggccttaactagtgcc 262  Q
    ||||||||||| || ||||| ||| |||||||||||||||||||||||||||| |||||||  ||||||||||||||    
T  47305592 aaatatttcgaattttcgatccatagattacacatattttcatgataagttaccatttaaacaccttaactagtgcc 47305516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 676488 - 676400
Alignment:
Q  136 cgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 225  Q
    |||||||||||||||| ||||||||| ||  ||||||||  ||| ||||| ||||||||||||| |  ||||||||||||||||||||||    
T  676488 cgagacactctttaaacattctaaaataagtaattatttattaa-aaagttaaatatttcgattttaaatgcattgattacacatatttt 676400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 37352535 - 37352436
Alignment:
Q  128 agtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttca 227  Q
    ||||||||||||||| ||||||| ||||| |||| || ||||||||  || | ||||||||||||||| |||  | ||||||| |||||||| |||||||    
T  37352535 agtgcctccgagacattctttaaggattcaaaaacaagaaattattccattaaaaagtcaaatatttcaatttccaatgcattaattacacaaattttca 37352436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 33887971 - 33887887
Alignment:
Q  133 ctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 217  Q
    ||||||||||||||||||  |||| |||| ||  ||||||| | ||| ||||||||||||||| ||| || ||||||||||||||    
T  33887971 ctccgagacactctttaagcattccaaaataaataattattctttaaaaaagtcaaatatttcaattttcaatgcattgattaca 33887887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 260
Target Start/End: Complemental strand, 36015141 - 36015002
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| | || ||||| |||| ||||||| ||||  |||| || |||||||||||||| ||| |||||||| || ||| || ||  ||||||||    
T  36015141 gtcttgttaacgaatgtctccgggacattctttaaggatttcaaaaaaagaaattattttataaaaaaatcaaatatgtcaattttcaatttattgatta 36015042  T
Q  216 cacatattttcatgataagttactatttaaaggccttaactagtg 260  Q
    ||| ||||||     ||||||||  ||||||| ||||||||||||    
T  36015041 cacgtatttt-----taagttaccttttaaagaccttaactagtg 36015002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 256
Target Start/End: Complemental strand, 36285887 - 36285774
Alignment:
Q  142 actctttaaagattctaaaagaataaattattttataataaag-tcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 240  Q
    |||||||||| ||| |||||||| |||  ||||||||| |||  |||||||||| ||||  |||| |||||||||||  |||||| ||||||||||||      
T  36285887 actctttaaaaattttaaaagaagaaagcattttataaaaaaaatcaaatattttgatttccgatacattgattaca--tatttttatgataagttacat 36285790  T
Q  241 tttaaaggccttaact 256  Q
    |||||||| |||||||    
T  36285789 tttaaaggacttaact 36285774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 45375483 - 45375399
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaa-ttattttataataaagtcaaatatttcgatt 199  Q
    ||||| ||||| |||||||||| | |||||||||| ||||||||||||| ||| |||| |||||| ||||| |||||||| ||||    
T  45375483 gtcttattaacgagtgcctccggggcactctttaaggattctaaaagaagaaacttatgttataaaaaagttaaatattttgatt 45375399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 15995924 - 15995971
Alignment:
Q  181 aaagtcaaatatttcgattctcgatgcattgattacacatattttcat 228  Q
    ||||| ||||||||||||| || |||||||||||||||||||||||||    
T  15995924 aaagttaaatatttcgattttcaatgcattgattacacatattttcat 15995971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 228
Target Start/End: Original strand, 35754017 - 35754126
Alignment:
Q  119 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 218  Q
    |||| ||| |||| ||| || |||||||||||  |||  |||| || |||||||||||||| | | |||| |||||||||| || ||||||| |||||||    
T  35754017 ttgtcaacgagtgtctctgaaacactctttaagaatttcaaaaaaagaaattattttataaaataatcaagtatttcgattttcaatgcattaattacac 35754116  T
Q  219 atattttcat 228  Q
    || |||||||    
T  35754117 atgttttcat 35754126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 44495238 - 44495314
Alignment:
Q  168 attattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattta 244  Q
    |||||||||||| ||| | ||||||||||||| |  || ||||||||||||||||||| || | |||||| ||||||    
T  44495238 attattttataaaaaatttaaatatttcgatttttaattcattgattacacatatttttataacaagttattattta 44495314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 14574768 - 14574815
Alignment:
Q  181 aaagtcaaatatttcgattctcgatgcattgattacacatattttcat 228  Q
    ||||| ||||| ||||||| || |||||||||||||||||||||||||    
T  14574768 aaagttaaatacttcgattttcaatgcattgattacacatattttcat 14574815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 217
Target Start/End: Complemental strand, 35599944 - 35599837
Alignment:
Q  110 ttaattgtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcat 209  Q
    ||||| ||||||||||| ||||||||||||| |||||||||| || |||||  |  |||||||| | ||| ||| ||||||| ||| | | || ||||||    
T  35599944 ttaatggtcttgttaacgagtgcctccgagatactctttaaacatactaaattaggaaattattctttaaaaaattcaaatagttcaaatttcaatgcat 35599845  T
Q  210 tgattaca 217  Q
    ||| ||||    
T  35599844 tgaataca 35599837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 228
Target Start/End: Original strand, 31477085 - 31477175
Alignment:
Q  139 gacactctttaaagattctaaaagaat-aaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcat 228  Q
    |||||| ||||| |||||||||| ||  |||||||| ||||| || |||||| |  | |||| || |||||||||||||||||||||||||    
T  31477085 gacactatttaaggattctaaaaaaaagaaattattgtataaaaacgtcaaaaaaattgattttcaatgcattgattacacatattttcat 31477175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 228
Target Start/End: Complemental strand, 10032058 - 10031945
Alignment:
Q  115 tgtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatt 214  Q
    ||||| |||||| |||||| ||| ||||||||||||  |||| ||||  |  ||||||||| | | ||||| |||| ||||||||  | |||||||||||    
T  10032058 tgtctcgttaacgagtgcccccgggacactctttaagcattccaaaattagtaattatttttttaaaaagttaaatgtttcgatttccaatgcattgatt 10031959  T
Q  215 acacatattttcat 228  Q
    |||||  |||||||    
T  10031958 acacactttttcat 10031945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 25120271 - 25120218
Alignment:
Q  138 agacactctttaaagattctaaaagaataaattattttataataaagtcaaata 191  Q
    ||||||||||||||||||  |||  ||||||||||||| ||| |||||||||||    
T  25120271 agacactctttaaagatttcaaattaataaattattttttaaaaaagtcaaata 25120218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 27359398 - 27359466
Alignment:
Q  187 aaatatttcgattctcgatgcattgattacacatattttcat-gataagttactatttaaaggccttaa 254  Q
    |||||||||||||  | ||||||||||||||| | |||||||  | ||||||||||||||||| |||||    
T  27359398 aaatatttcgatttccaatgcattgattacacttgttttcataaaaaagttactatttaaaggtcttaa 27359466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 116 - 262
Target Start/End: Original strand, 31206280 - 31206426
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| ||| ||  ||||  ||||||||| ||||| ||||| | |||||||||||||| ||| |||||||||| ||||  ||||||||||||||    
T  31206280 gtcttgttaacgagtccccacgaggtactctttaaggattcaaaaagtagaaattattttataaaaaaatcaaatattttgatttccgatgcattgatta 31206379  T
Q  216 cacatattttcatgataagttactatttaaaggccttaactagtgcc 262  Q
    |||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  31206380 cacatatttttatgataaattactatttaaaggccttaactaatgcc 31206426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 254
Target Start/End: Original strand, 38956884 - 38956992
Alignment:
Q  146 tttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactatttaa 245  Q
    ||||| ||||||||||||   ||||| ||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||  ||||||    
T  38956884 tttaaggattctaaaagatgtaattaatttataaaaaagtcaaatatttcgatttccgatgcattgattacacatattttcatgataagttatcatttaa 38956983  T
Q  246 aggccttaa 254  Q
    || ||||||    
T  38956984 agaccttaa 38956992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 139 - 263
Target Start/End: Complemental strand, 5217869 - 5217747
Alignment:
Q  139 gacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttac 238  Q
    |||||||||||| ||||| ||||  |||||| ||||||||| |||||||||||||||||||  ||||| |||||||||||||||||| ||||||| ||||    
T  5217869 gacactctttaaggattcaaaaa--ataaatgattttataaaaaagtcaaatatttcgatttccgatgtattgattacacatatttttatgataaattac 5217772  T
Q  239 tatttaaaggccttaactagtgcct 263  Q
     || |||||  ||||||||||||||    
T  5217771 catataaagatcttaactagtgcct 5217747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 141 - 246
Target Start/End: Complemental strand, 45368834 - 45368729
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 240  Q
    |||||||||| ||||| |||| || |||||||||||||| ||||| ||||||||| ||| |||||||| |||||| |||||||||||||||||||||| |    
T  45368834 cactctttaaggattccaaaaaaagaaattattttataaaaaagttaaatatttcaattttcgatgcaatgattatacatattttcatgataagttacca 45368735  T
Q  241 tttaaa 246  Q
    ||||||    
T  45368734 tttaaa 45368729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 142 - 255
Target Start/End: Complemental strand, 5020162 - 5020051
Alignment:
Q  142 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 241  Q
    ||||||||| ||||||||||||| |||| ||||||||| ||||||||| ||||| |||  |||| ||||||||||||  |||||||||| ||||||| ||    
T  5020162 actctttaaggattctaaaagaagaaataattttataaaaaagtcaaagatttcaatttccgatacattgattacac--attttcatgacaagttaccat 5020065  T
Q  242 ttaaaggccttaac 255  Q
    ||||||||||||||    
T  5020064 ttaaaggccttaac 5020051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 143 - 254
Target Start/End: Complemental strand, 20169827 - 20169716
Alignment:
Q  143 ctctttaaagattctaaaagaataaattattttataataaagtc-aaatatttcgattctcgatgcattgattacacatattttcatgataagttactat 241  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |  |||||||||||| | ||||||||||   ||||||| ||    
T  20169827 ctctttaaagattctaaaagaataaattattttataa-aaagtcaaaatatttcgatttttaatgcattgattatatatattttcatacaaagttaccat 20169729  T
Q  242 ttaaaggccttaa 254  Q
    ||||||| |||||    
T  20169728 ttaaaggtcttaa 20169716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 257
Target Start/End: Original strand, 9632898 - 9633040
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaa--taaattattttataataaagtcaaatatttcgattctcgatgcattgat 213  Q
    ||||||||||| |||| ||||| | |||||||||||||||  |||| ||  ||||  ||| || || |||||||||||||| ||||   |||||||||||    
T  9632898 gtcttgttaacaagtgtctccgggtcactctttaaagatttcaaaaaaaaataaaaaattataaaa-aaagtcaaatattttgatttcagatgcattgat 9632996  T
Q  214 tacacatattttcatgataagttactatttaaaggccttaacta 257  Q
    ||||||||||||||| |||| || | |||||||| |||||||||    
T  9632997 tacacatattttcataataaattgccatttaaagaccttaacta 9633040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 33636685 - 33636767
Alignment:
Q  113 attgtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttc 195  Q
    |||||||| ||||| |||||  ||||||||||||||||  |||||||||| | ||||||||| |||| |||||||||| ||||    
T  33636685 attgtcttattaacgagtgcgcccgagacactctttaagcattctaaaaggagaaattatttcataaaaaagtcaaatgtttc 33636767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 245
Target Start/End: Complemental strand, 39691247 - 39691121
Alignment:
Q  119 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 218  Q
    |||||||| ||||||  |||||||||||||||  |||| | |  || |||||||| | ||| ||||||||||| ||| ||| || ||||||||| |||||    
T  39691247 ttgttaacgagtgccctcgagacactctttaagcattccacattaaaaaattattctttaaaaaagtcaaatagttcaattttcaatgcattgaatacac 39691148  T
Q  219 atattttcatgataagttactatttaa 245  Q
    | |||||||| | || |||||||||||    
T  39691147 aaattttcataaaaaattactatttaa 39691121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 7044442 - 7044329
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 240  Q
    |||||||||| ||||||||||||| |||||| ||||| | ||||||||| ||||||||| |  | || |||||||||| | |||||||   |||||| ||    
T  7044442 cactctttaaggattctaaaagaagaaattaatttattaaaaagtcaaacatttcgatttttaaggctttgattacacgtgttttcatacaaagttatta 7044343  T
Q  241 tttaaaggccttaa 254  Q
    | |||||| |||||    
T  7044342 tataaaggtcttaa 7044329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 24103187 - 24103087
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    |||| |||||| | ||| |||||||||||||||||  ||||||||| || |||||||||| | | || ||||||| ||||||||  ||||||| ||||||    
T  24103187 gtctcgttaacgattgcttccgagacactctttaagcattctaaaataagaaattatttttttaaaaggtcaaatgtttcgatttccgatgcaatgatta 24103088  T
Q  216 c 216  Q
    |    
T  24103087 c 24103087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 208
Target Start/End: Complemental strand, 39932813 - 39932721
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgca 208  Q
    ||||||||||| | | ||||||| |||||||||||| ||||||||||||  ||| |||  |||| ||||||||||||||| ||| || |||||    
T  39932813 gtcttgttaacgaattcctccgaaacactctttaaacattctaaaagaagtaataattccataaaaaagtcaaatatttcaattttccatgca 39932721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 254
Target Start/End: Complemental strand, 10335159 - 10335020
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttat-aataaagtcaaatatttcgattctcgatgcattgatt 214  Q
    ||||||||||| ||||| | ||   ||||||||||  |||| |||||||||||||||| ||| || |||||||||||||   ||| || ||||||| |||    
T  10335159 gtcttgttaacgagtgcattcggagcactctttaagaattccaaaagaataaattattctataaaaaaagtcaaatattataattttcaatgcattaatt 10335060  T
Q  215 acacatattttcatgataagttactatttaaaggccttaa 254  Q
    | ||| |||||||  | || |||| |||||||||||||||    
T  10335059 atacaaattttcacaaaaaattacaatttaaaggccttaa 10335020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 179
Target Start/End: Complemental strand, 36819793 - 36819755
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataa 179  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  36819793 cactctttaaagattctaaaagaaaaaattattttataa 36819755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 37564468 - 37564393
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaata 191  Q
    ||||||||||| |||||||| | ||||||||||||| || |||||  || |||||||| | ||| |||||||||||    
T  37564468 gtcttgttaacgagtgcctctgggacactctttaaacatgctaaattaagaaattattctttaaaaaagtcaaata 37564393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 2124203 - 2124141
Alignment:
Q  117 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataa 179  Q
    |||||||||| ||||   |||||||| |||||||| |||||||||||| |||||||| |||||    
T  2124203 tcttgttaacgagtgttcccgagacattctttaaacattctaaaagaagaaattattctataa 2124141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 5968437 - 5968377
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattatttta 176  Q
    ||||||||||| |||||||||  | ||||||||||| ||||||||| ||  ||||||||||    
T  5968437 gtcttgttaacgagtgcctccagggcactctttaaacattctaaaacaagcaattatttta 5968377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 228
Target Start/End: Original strand, 22209376 - 22209488
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||| ||||| |||| ||||| ||||||||||||  ||| ||||||||  |||||||   ||| ||||| |||||||| ||||  | |  |||||||||    
T  22209376 gtcttattaacaagtgtctccgggacactctttaagcattttaaaagaagcaattattccttaaaaaagttaaatattttgatttccaagacattgatta 22209475  T
Q  216 cacatattttcat 228  Q
    || ||||||||||    
T  22209476 catatattttcat 22209488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 141 - 262
Target Start/End: Complemental strand, 12383129 - 12383008
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 240  Q
    ||||||||||  |||  ||||| | |||||||||||||| ||||| |||||||| ||||  |||||||||||||| ||||||||| ||||||| ||||||    
T  12383129 cactctttaagaatttcaaaaggagaaattattttataaaaaagttaaatattttgatttccgatgcattgattatacatatttttatgataaattacta 12383030  T
Q  241 tttaaaggccttaactagtgcc 262  Q
    |||||||| |||||||||||||    
T  12383029 tttaaaggacttaactagtgcc 12383008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 141 - 254
Target Start/End: Original strand, 16442075 - 16442188
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 240  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||| |||| |||| || |   ||||||||||||| |||||||   |||||||||    
T  16442075 cactctttaaagattctaaaagaataaattagtttataaaaaagtcaaacattttgattttcaaaatattgattacacatgttttcatacaaagttacta 16442174  T
Q  241 tttaaaggccttaa 254  Q
    | |||||| |||||    
T  16442175 tataaaggtcttaa 16442188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 144 - 239
Target Start/End: Original strand, 8176324 - 8176419
Alignment:
Q  144 tctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttact 239  Q
    ||||||| ||||||||||||| |||| | ||| ||| ||||||||| ||||| ||| |||||||||| ||||||||||||||||| ||||||||||    
T  8176324 tctttaaggattctaaaagaagaaataaatttttaaaaaagtcaaaaatttcaattttcgatgcattaattacacatattttcataataagttact 8176419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 12307821 - 12307904
Alignment:
Q  142 actctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatatttt 225  Q
    ||||||||| ||||  ||||||| |||||||||||||| ||||||||||||||  ||| || || |||| ||||||||||||||    
T  12307821 actctttaaggatttcaaaagaagaaattattttataaaaaagtcaaatattttaattttcaatacattaattacacatatttt 12307904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 245
Target Start/End: Complemental strand, 31702874 - 31702747
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| ||||  |||| | ||||||||||  |||  ||||||| |||||||||||||| ||||| || |||||  |||    ||||||||||||    
T  31702874 gtcttgttaacgagtg--tccggggcactctttaagaatttcaaaagaagaaattattttataaaaaagttaagtattttaatttctaatgcattgatta 31702777  T
Q  216 cacatattttcatgataagttactatttaa 245  Q
    |||||||||| || | ||||||||||||||    
T  31702776 cacatatttttataaaaagttactatttaa 31702747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 7465451 - 7465558
Alignment:
Q  119 ttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacac 218  Q
    |||||||| |||||| ||| | |||| ||||| |||||| |||||| ||||| ||  |||| ||||||||||||||| |||  ||||||||||||||||     
T  7465451 ttgttaacgagtgcccccggg-cactttttaaggattcttaaagaagaaattgttccataaaaaagtcaaatatttcaatttccgatgcattgattacat 7465549  T
Q  219 atattttca 227  Q
    | |||||||    
T  7465550 aaattttca 7465558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 22695549 - 22695473
Alignment:
Q  185 tcaaatatttcgattctcgatgcattgattacacata-ttttcatgataagttactatttaaaggccttaactagtg 260  Q
    ||||||||||| ||| ||||||||||||||||||||| |||| || | ||||||| ||||||| |||||||| ||||    
T  22695549 tcaaatatttcaattttcgatgcattgattacacatatttttaataaaaagttaccatttaaaagccttaacgagtg 22695473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 22696071 - 22696000
Alignment:
Q  117 tcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaa 188  Q
    |||||||||| |||||||| ||  |||||||||| ||||| ||||||| |||||||||||||| ||| ||||    
T  22696071 tcttgttaacgagtgcctctgatgcactctttaaggattccaaaagaagaaattattttataaaaaaatcaa 22696000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 243
Target Start/End: Original strand, 35241410 - 35241509
Alignment:
Q  145 ctttaaagattctaaaagaataaattattttataata-aagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttactattt 243  Q
    |||||| |||| ||||| || |||||||||||||| | || | |||||||| ||||   ||||||||||||| ||||||||| |||||||||||| ||||    
T  35241410 ctttaaggattttaaaaaaagaaattattttataaaagaaattaaatattttgatttctgatgcattgattatacatatttttatgataagttaccattt 35241509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 254
Target Start/End: Complemental strand, 6048381 - 6048268
Alignment:
Q  141 cactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattacacatattttcatgataagttacta 240  Q
    ||||||||||| |||||||||||| |||||| ||||||| ||||| ||| ||||  |||  | |   ||||||||||||| |||||||   |||||||||    
T  6048381 cactctttaaaaattctaaaagaagaaattaatttataaaaaagtgaaacattttaatttccaagatattgattacacatgttttcatacaaagttacta 6048282  T
Q  241 tttaaaggccttaa 254  Q
    | |||||| |||||    
T  6048281 tataaaggtcttaa 6048268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 26311807 - 26311889
Alignment:
Q  144 tctttaaagattctaaaagaataaattattttataataa-agtcaaatatttcgattctcgatgcattgattacacatatttt 225  Q
    ||||||| |||||| ||||||||||||| ||||||| ||  || |||||||| |||| || || |||| ||||||||||||||    
T  26311807 tctttaaggattctgaaagaataaattaatttataaaaatggttaaatattttgattttcaatacattaattacacatatttt 26311889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 30509286 - 30509387
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||||||| |||| |||||  |||||||||||  || | |||| ||  ||||||| | ||| ||| ||||| ||||||||| || ||||||||||||    
T  30509286 gtcttgttaacgagtgtctccggaacactctttaagcataccaaaataagcaattattctttaaaaaaatcaaacatttcgattttcaatgcattgatta 30509385  T
Q  216 ca 217  Q
    ||    
T  30509386 ca 30509387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 217
Target Start/End: Complemental strand, 18245 - 18144
Alignment:
Q  116 gtcttgttaaccagtgcctccgagacactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgatta 215  Q
    ||||||| ||| |||||||| | |||||||||||| ||| ||||||||| ||||||| | |||| ||||||||||||||| |||| |||| |||||||||    
T  18245 gtcttgtaaacgagtgcctctgggacactctttaaggatgctaaaagaagaaattatgtcataaaaaagtcaaatatttcaattcccgatacattgatta 18146  T
Q  216 ca 217  Q
    ||    
T  18145 ca 18144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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