View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11863_low_7 (Length: 246)
Name: NF11863_low_7
Description: NF11863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11863_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 31745330 - 31745095
Alignment:
| Q |
1 |
ttacaattaccatttttagtattttttaataaattattgaatctcattctcttactataaaatactccctccgatcctttttataaaaagacatttaaat |
100 |
Q |
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| T |
31745330 |
ttacaattaccatttttagtattttttaataaattattgaatcttattctcttactataaaatactccatccggtcctttttataaaaagacatttaaat |
31745231 |
T |
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| Q |
101 |
caacaaaagttaatgaatctagttaaataattggactagatccattaacgtttgttaacctaaatatttattttaaataggactagagagagtctattat |
200 |
Q |
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| T |
31745230 |
caataaaagttgatgtatctagttaaataattggaccagatccattaacgtttgttaacctaaatatttattttaaataggactagagagagtatattat |
31745131 |
T |
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| Q |
201 |
tttggtaattggtatagactcttttttgatgtccat |
236 |
Q |
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| T |
31745130 |
tttggtaattggtatagactcttttttgaggtccat |
31745095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 169
Target Start/End: Original strand, 10069229 - 10069312
Alignment:
| Q |
86 |
aaaagacatttaaatcaacaaaagttaatgaatctagttaaataattggactagatccattaacgtttgttaacctaaatattt |
169 |
Q |
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| T |
10069229 |
aaaagacatttgagtcaataaaagtttatgtatctggttaaaaaattggactagatacattaacttttgttgacctaaatattt |
10069312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 32045211 - 32045160
Alignment:
| Q |
63 |
tactccctccgatcctttttataaaaagacatttaaatcaacaaaagttaatg |
115 |
Q |
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| T |
32045211 |
tactccctccgatcctatttataaaa-gatatttaactcaacaaaagttaatg |
32045160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 9213512 - 9213572
Alignment:
| Q |
59 |
aaaatactccctccgatcctttttataaaaagacatttaaatcaacaaaagttaatgaatct |
120 |
Q |
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| T |
9213512 |
aaaatactccctccggtcctatttat-aaaagacattttagtcaacaaaagttgatgtatct |
9213572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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