View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11864_high_10 (Length: 463)

Name: NF11864_high_10
Description: NF11864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11864_high_10
NF11864_high_10
[»] chr6 (4 HSPs)
chr6 (127-387)||(363531-363791)
chr6 (130-187)||(20006675-20006732)
chr6 (351-384)||(28863076-28863109)
chr6 (152-184)||(34559540-34559572)
[»] chr3 (14 HSPs)
chr3 (127-197)||(47683908-47683978)
chr3 (202-287)||(27639316-27639403)
chr3 (215-286)||(31996801-31996874)
chr3 (202-286)||(566963-567049)
chr3 (322-369)||(9189637-9189684)
chr3 (203-265)||(29586254-29586316)
chr3 (141-187)||(32187146-32187192)
chr3 (206-265)||(33632743-33632802)
chr3 (127-186)||(43460506-43460565)
chr3 (327-373)||(38857011-38857057)
chr3 (202-231)||(4699078-4699107)
chr3 (127-187)||(30633707-30633767)
chr3 (325-373)||(41351502-41351550)
chr3 (127-187)||(50279980-50280040)
[»] chr4 (7 HSPs)
chr4 (203-259)||(23119486-23119542)
chr4 (203-286)||(25200408-25200493)
chr4 (127-196)||(34259944-34260013)
chr4 (154-187)||(29949707-29949740)
chr4 (127-187)||(18634819-18634879)
chr4 (327-386)||(56269319-56269378)
chr4 (127-187)||(3223107-3223167)
[»] chr2 (12 HSPs)
chr2 (215-280)||(42075444-42075509)
chr2 (203-286)||(374628-374713)
chr2 (323-369)||(28584954-28585000)
chr2 (202-259)||(2061293-2061350)
chr2 (215-285)||(39329908-39329980)
chr2 (130-186)||(32755799-32755855)
chr2 (203-257)||(19908697-19908751)
chr2 (141-187)||(28508484-28508530)
chr2 (323-373)||(39329556-39329605)
chr2 (222-286)||(38445561-38445626)
chr2 (130-187)||(38689030-38689087)
chr2 (154-187)||(39454272-39454305)
[»] chr8 (7 HSPs)
chr8 (127-187)||(33511719-33511779)
chr8 (127-187)||(20284825-20284885)
chr8 (127-187)||(21071454-21071514)
chr8 (323-387)||(22593927-22593991)
chr8 (128-187)||(102349-102408)
chr8 (203-286)||(9195980-9196063)
chr8 (202-259)||(42502933-42502988)
[»] chr5 (9 HSPs)
chr5 (221-382)||(5355369-5355541)
chr5 (205-286)||(22408064-22408145)
chr5 (203-265)||(25256122-25256184)
chr5 (203-265)||(25319911-25319973)
chr5 (211-283)||(1923301-1923374)
chr5 (146-187)||(27546557-27546598)
chr5 (205-265)||(11775711-11775771)
chr5 (127-187)||(12827859-12827919)
chr5 (155-187)||(36548414-36548446)
[»] chr7 (5 HSPs)
chr7 (203-286)||(23311425-23311510)
chr7 (325-384)||(47270713-47270772)
chr7 (323-356)||(6882255-6882288)
chr7 (333-373)||(38200468-38200508)
chr7 (201-265)||(38200589-38200653)
[»] chr1 (6 HSPs)
chr1 (203-260)||(9651955-9652012)
chr1 (215-283)||(8710901-8710969)
chr1 (323-386)||(8711017-8711081)
chr1 (128-187)||(40605314-40605373)
chr1 (203-259)||(5047482-5047538)
chr1 (127-187)||(38627337-38627397)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 127 - 387
Target Start/End: Original strand, 363531 - 363791
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaa-tggttatacaaatatcatcaccctaattatttcgagttaagatcatctccatttat 225  Q
    ||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  363531 aagaagagagaaaaagaaa-ttgtcttaaaagttttcacaaaaatggttatacaaatatcatcaccctaattatttcgagttaaaatcctctccatttat 363629  T
Q  226 tagtctcttcatttctcccatctggagagataaaaacacagaagtttgaaaataattaataacggtgagact-gtagggtcaactacatannnnnnnata 324  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| || ||||||||| |||||||||||||||||       |||    
T  363630 tagtctcttcatttctctcatctggagagataaaaa-acagaagtttgaaaataattaacaatggtgagactggtagggtcaactacatatttttctata 363728  T
Q  325 tctatctctaaccaaatgacattattcatttattttaaacaaatggagaacatctttactcaa 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  363729 tctatctctaaccaaatgacattattcatttattttaaacaaatggagaacatctttactcaa 363791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 20006732 - 20006675
Alignment:
Q  130 aagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    ||||||||||||||||||||||  ||||||| |||| |||| || |||||||||||||    
T  20006732 aagagagaaaaagaaggttgtcacaaaagttatcaccaaatagtgatacaaatatcat 20006675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 384
Target Start/End: Original strand, 28863076 - 28863109
Alignment:
Q  351 catttattttaaacaaatggagaacatctttact 384  Q
    |||||||||||||||||||||||| |||||||||    
T  28863076 catttattttaaacaaatggagaagatctttact 28863109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 34559572 - 34559540
Alignment:
Q  152 ttaaaagttttcacaaaatggttatacaaatat 184  Q
    ||||||||| |||||||||||||||||||||||    
T  34559572 ttaaaagttatcacaaaatggttatacaaatat 34559540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 47683908 - 47683978
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcatcaccctaatt 197  Q
    ||||||||||||| |||||||||||| ||||||| ||||||||||||| |||||||||||| || ||||||    
T  47683908 aagaagagagaaagagaaggttgtctcaaaagttgtcacaaaatggttgtacaaatatcattactctaatt 47683978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 202 - 287
Target Start/End: Original strand, 27639316 - 27639403
Alignment:
Q  202 cgagttaagatcatctccatttattagtctcttcatttctcccatctggagagataaaaacac--agaagtttgaaaataattaataa 287  Q
    |||||||||||||||| ||||||||||||||||||| |||  ||| |||||||| | | ||||  |||||||||||||| ||||||||    
T  27639316 cgagttaagatcatctacatttattagtctcttcatctctttcatttggagagaaagagacacaaagaagtttgaaaatgattaataa 27639403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 215 - 286
Target Start/End: Original strand, 31996801 - 31996874
Alignment:
Q  215 tctccatttattagtctcttcatttctcccatctggagagataaaa--acacagaagtttgaaaataattaata 286  Q
    ||||||||||||||| ||| ||||||| | || |||||||||||||  ||| ||||||||||||||||||||||    
T  31996801 tctccatttattagtgtctccatttcttctatttggagagataaaagtacaaagaagtttgaaaataattaata 31996874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 202 - 286
Target Start/End: Complemental strand, 567049 - 566963
Alignment:
Q  202 cgagttaagatcatctccatttattagtctcttcatttctcccatctggagagataaaaac--acagaagtttgaaaataattaata 286  Q
    |||||||||||| ||| ||||||||||||| || ||||||  ||| |||||||||||| ||  | |||||||||||||||| |||||    
T  567049 cgagttaagatcctcttcatttattagtctattaatttctttcatttggagagataaagacataaagaagtttgaaaataagtaata 566963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 322 - 369
Target Start/End: Original strand, 9189637 - 9189684
Alignment:
Q  322 atatctatctctaaccaaatgacattattcatttattttaaacaaatg 369  Q
    |||| ||||||| | |||||||||||||||||||||||||||||||||    
T  9189637 atatttatctctcatcaaatgacattattcatttattttaaacaaatg 9189684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 265
Target Start/End: Original strand, 29586254 - 29586316
Alignment:
Q  203 gagttaagatcatctccatttattagtctcttcatttctcccatctggagagataaaaacaca 265  Q
    ||||||||||||||||||||||||| ||||| ||||||  |||| | |||||||||| |||||    
T  29586254 gagttaagatcatctccatttattattctctccatttcatccatttagagagataaagacaca 29586316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 32187192 - 32187146
Alignment:
Q  141 agaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    ||||||||||| |||||||| ||||||||||||| ||||||||||||    
T  32187192 agaaggttgtcataaaagttgtcacaaaatggttgtacaaatatcat 32187146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 265
Target Start/End: Original strand, 33632743 - 33632802
Alignment:
Q  206 ttaagatcatctccatttattagtctcttcatttctcccatctggagagataaaaacaca 265  Q
    |||||||| ||||||||||||| ||||| ||||||  |||| |||||||||| |||||||    
T  33632743 ttaagatcctctccatttattattctctccatttcatccatttggagagatataaacaca 33632802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 43460506 - 43460565
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatca 186  Q
    |||||||||||||| ||||| ||||  ||||||| |||||||| |||| |||||||||||    
T  43460506 aagaagagagaaaatgaaggctgtcccaaaagttgtcacaaaaaggttgtacaaatatca 43460565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 373
Target Start/End: Original strand, 38857011 - 38857057
Alignment:
Q  327 tatctctaaccaaatgacattattcatttattttaaacaaatggaga 373  Q
    ||||||| ||||||||||||| | |||||||||||||||| ||||||    
T  38857011 tatctctcaccaaatgacattctccatttattttaaacaattggaga 38857057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 231
Target Start/End: Complemental strand, 4699107 - 4699078
Alignment:
Q  202 cgagttaagatcatctccatttattagtct 231  Q
    ||||||||||||||||||||||||||||||    
T  4699107 cgagttaagatcatctccatttattagtct 4699078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 30633767 - 30633707
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    ||||||||||||||| ||||||||| | |||||| ||| ||||| | | ||||||||||||    
T  30633767 aagaagagagaaaaataaggttgtcattaaagttatcataaaatagatgtacaaatatcat 30633707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 373
Target Start/End: Original strand, 41351502 - 41351550
Alignment:
Q  325 tctatctctaaccaaatgacattattcatttattttaaacaaatggaga 373  Q
    ||||||||| || ||||||||||||||||||||||| | ||||| ||||    
T  41351502 tctatctctcacaaaatgacattattcatttatttttagcaaatagaga 41351550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 50280040 - 50279980
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    ||||||||||||||| ||||||||| | |||||| |||  |||||| | ||||||||||||    
T  50280040 aagaagagagaaaaacaaggttgtcattaaagttgtcatgaaatggatgtacaaatatcat 50279980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 23119542 - 23119486
Alignment:
Q  203 gagttaagatcatctccatttattagtctcttcatttctcccatctggagagataaa 259  Q
    |||| |||||||||||||||||||||||||| ||||||| |||| ||||||||||||    
T  23119542 gagtcaagatcatctccatttattagtctctccatttcttccatttggagagataaa 23119486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 25200408 - 25200493
Alignment:
Q  203 gagttaagatcatctccatttattagtctcttcatttctcccatctggagagataaaaac--acagaagtttgaaaataattaata 286  Q
    |||| |||||||||| ||||||||||||||| |||||||  ||| |||| ||||||| ||  | ||||||||||||||||||||||    
T  25200408 gagtcaagatcatctacatttattagtctctccatttctttcatttggaaagataaagacttaaagaagtttgaaaataattaata 25200493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 34259944 - 34260013
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcatcaccctaat 196  Q
    ||||||||||||||||||| |||||  ||||||| |||| |||||||| |||||||||||| || |||||    
T  34259944 aagaagagagaaaaagaagtttgtcacaaaagttgtcaccaaatggttgtacaaatatcattactctaat 34260013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 29949707 - 29949740
Alignment:
Q  154 aaaagttttcacaaaatggttatacaaatatcat 187  Q
    ||||||||||||||||||||||||||||||||||    
T  29949707 aaaagttttcacaaaatggttatacaaatatcat 29949740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 18634819 - 18634879
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    ||||||||||||||| ||||||||||||||| || |  |||||||||| || |||||||||    
T  18634819 aagaagagagaaaaataaggttgtcttaaaaattgtttcaaaatggttgtataaatatcat 18634879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 386
Target Start/End: Complemental strand, 56269378 - 56269319
Alignment:
Q  327 tatctctaaccaaatgacattattcatttattttaaacaaatggagaacatctttactca 386  Q
    ||||||| ||||||||||||||| |||||| ||||| |||||| || | |||||||||||    
T  56269378 tatctctcaccaaatgacattatccatttactttaagcaaatgaaggaaatctttactca 56269319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 3223107 - 3223167
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    |||||||||||||||||||||||||   ||||||||||   ||||| | ||||||||||||    
T  3223107 aagaagagagaaaaagaaggttgtcactaaagttttcatggaatggatgtacaaatatcat 3223167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 280
Target Start/End: Complemental strand, 42075509 - 42075444
Alignment:
Q  215 tctccatttattagtctcttcatttctcccatctggagagataaaaacacagaagtttgaaaataa 280  Q
    ||||||||||||||| | | ||||||| |||| |||||||||||| ||||| ||||||||||||||    
T  42075509 tctccatttattagtttatccatttcttccatttggagagataaagacacataagtttgaaaataa 42075444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 374628 - 374713
Alignment:
Q  203 gagttaagatcatctccatttattagtctcttcatttctcccatctggagagataaaaa--cacagaagtttgaaaataattaata 286  Q
    |||| |||||| ||||||||||||||||||||| ||||| |||| || ||||||||| |   | |||||||||||| |||||||||    
T  374628 gagtgaagatcttctccatttattagtctcttcgtttcttccatttgaagagataaagatttaaagaagtttgaaagtaattaata 374713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 369
Target Start/End: Complemental strand, 28585000 - 28584954
Alignment:
Q  323 tatctatctctaaccaaatgacattattcatttattttaaacaaatg 369  Q
    ||||||||| | ||||||||||||| |||||||||||||||||||||    
T  28585000 tatctatctttcaccaaatgacattcttcatttattttaaacaaatg 28584954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 2061293 - 2061350
Alignment:
Q  202 cgagttaagatcatctccatttattagtctcttcatttctcccatctggagagataaa 259  Q
    |||||||||||| ||||||||||||||| |||  |||||| |||| ||||||||||||    
T  2061293 cgagttaagatcctctccatttattagtatctcaatttcttccatttggagagataaa 2061350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 215 - 285
Target Start/End: Complemental strand, 39329980 - 39329908
Alignment:
Q  215 tctccatttattagtctcttcatttctcccatctggagagataaaaacac--agaagtttgaaaataattaat 285  Q
    ||||||||||||||| |||  |||||  |||| |||||||||||| ||||  |||||||||||||||||||||    
T  39329980 tctccatttattagtgtctctatttcatccatttggagagataaagacacaaagaagtttgaaaataattaat 39329908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 32755799 - 32755855
Alignment:
Q  130 aagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatca 186  Q
    |||||||||||| |||| ||||| ||||||| ||||||||||||| || ||||||||    
T  32755799 aagagagaaaaataaggctgtctcaaaagttgtcacaaaatggttgtagaaatatca 32755855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 19908697 - 19908751
Alignment:
Q  203 gagttaagatcatctccatttattagtctcttcatttctcccatctggagagata 257  Q
    ||||||||||| ||||||||||||| ||||||||||||  |||| | ||||||||    
T  19908697 gagttaagatcctctccatttattattctcttcatttcatccatttagagagata 19908751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 28508530 - 28508484
Alignment:
Q  141 agaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    |||||||||||  ||||||| ||||||||||||| ||||||||||||    
T  28508530 agaaggttgtcccaaaagttgtcacaaaatggttgtacaaatatcat 28508484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 373
Target Start/End: Complemental strand, 39329605 - 39329556
Alignment:
Q  323 tatctatctctaaccaaatgacattattcatttattttaaacaaatggaga 373  Q
    ||||||||||| | |||||||| |||| |||||||||||||||||||||||    
T  39329605 tatctatctctcatcaaatgac-ttatccatttattttaaacaaatggaga 39329556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 38445626 - 38445561
Alignment:
Q  222 ttattagtctcttcatttctcccatctggagagataaaaacac-agaagtttgaaaataattaata 286  Q
    |||||| ||||||||||||| |||| |||| |||||||  ||| | ||||||||||||||||||||    
T  38445626 ttattactctcttcatttcttccatttggaaagataaagtcacaaaaagtttgaaaataattaata 38445561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 38689030 - 38689087
Alignment:
Q  130 aagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    |||||||| |||||||||||||  |||| ||||||| |||||||| | ||||||||||    
T  38689030 aagagagagaaagaaggttgtcccaaaaattttcactaaatggttgttcaaatatcat 38689087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 39454272 - 39454305
Alignment:
Q  154 aaaagttttcacaaaatggttatacaaatatcat 187  Q
    ||||||| ||||||||||||||||||||||||||    
T  39454272 aaaagttgtcacaaaatggttatacaaatatcat 39454305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 33511719 - 33511779
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    |||||||||||| ||||| ||||||  ||||||||||||||||| ||| ||||||||||||    
T  33511719 aagaagagagaagaagaatgttgtcccaaaagttttcacaaaatagttgtacaaatatcat 33511779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 20284825 - 20284885
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    |||||||||||||||||||||||||  ||||||| |||  |||||||| | ||||||||||    
T  20284825 aagaagagagaaaaagaaggttgtcacaaaagttgtcatcaaatggttgttcaaatatcat 20284885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Original strand, 21071454 - 21071514
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    |||||||||||||||||||||||||  ||||||| |||  |||||||| | ||||||||||    
T  21071454 aagaagagagaaaaagaaggttgtcacaaaagttgtcatcaaatggttgttcaaatatcat 21071514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 22593991 - 22593927
Alignment:
Q  323 tatctatctctaaccaaatgacattattcatttattttaaacaaatggagaacatctttactcaa 387  Q
    |||||||| || ||||||||||||| | |||||||||||| ||||||||||  ||||| ||||||    
T  22593991 tatctatcgcttaccaaatgacattgtccatttattttaagcaaatggagaggatcttaactcaa 22593927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 102408 - 102349
Alignment:
Q  128 agaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    ||||| ||| |||||||||||| | |||||||| | ||||||||||| ||||||||||||    
T  102408 agaagcgaggaaaagaaggttggcctaaaagttgtaacaaaatggttgtacaaatatcat 102349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 286
Target Start/End: Complemental strand, 9196063 - 9195980
Alignment:
Q  203 gagttaagatcatctccatttattagtctcttcatttctcccatctggagagataaaaacacagaagtttgaaaataattaata 286  Q
    |||| ||||||| ||||||||||||||||||  ||||||  ||| | |||| ||||| ||| | || |||||||||||||||||    
T  9196063 gagtcaagatcacctccatttattagtctctcaatttctttcatttagagaaataaagacataaaaatttgaaaataattaata 9195980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 42502933 - 42502988
Alignment:
Q  202 cgagttaagatcatctccatttattagtctcttcatttctcccatctggagagataaa 259  Q
    |||||||||||| ||||||||||||||||||  ||||| | |||| ||||||||||||    
T  42502933 cgagttaagatcctctccatttattagtctc--cattttttccatttggagagataaa 42502988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 382
Target Start/End: Original strand, 5355369 - 5355541
Alignment:
Q  221 tttattagtctcttcatttctcccatctggagagataaaaac--acagaagtttgaaaataattaataacggtgagact---------gtagggtcaact 309  Q
    ||||||||| |||||||||||||||| | |||||||||| ||  | ||||||||||||||||||| ||| | |||||||         ||||| || |||    
T  5355369 tttattagtatcttcatttctcccatttagagagataaagacataaagaagtttgaaaataattagtaatgatgagactcacttaatggtaggatccact 5355468  T
Q  310 acatannnnnnnatatctatctctaaccaaatgacattattcatttattttaaacaaatggagaacatcttta 382  Q
    |||||        ||||||||||| ||||||| |||||||  |||| |||||||||||||||||  |||||||    
T  5355469 acatacttttttgtatctatctctcaccaaataacattatctatttcttttaaacaaatggagatgatcttta 5355541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 205 - 286
Target Start/End: Original strand, 22408064 - 22408145
Alignment:
Q  205 gttaagatcatctccatttattagtctcttcatttctcccatctggagagataaaaacacagaagtttgaaaataattaata 286  Q
    |||| |||| |||| |||||||||||||||||||||| | || |  | ||||||| | || |||||||||||||||||||||    
T  22408064 gttaggatcctctctatttattagtctcttcatttctactatttaaaaagataaagatacggaagtttgaaaataattaata 22408145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 265
Target Start/End: Original strand, 25256122 - 25256184
Alignment:
Q  203 gagttaagatcatctccatttattagtctcttcatttctcccatctggagagataaaaacaca 265  Q
    |||| |||||| |||| |||||||||||||| ||||||| | || || |||||||||||||||    
T  25256122 gagtcaagatcctctctatttattagtctctccatttcttctatttgaagagataaaaacaca 25256184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 265
Target Start/End: Original strand, 25319911 - 25319973
Alignment:
Q  203 gagttaagatcatctccatttattagtctcttcatttctcccatctggagagataaaaacaca 265  Q
    |||| |||||| |||| |||||||||||||| ||||||| | || || |||||||||||||||    
T  25319911 gagtcaagatcctctctatttattagtctctccatttcttctatttgaagagataaaaacaca 25319973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 283
Target Start/End: Original strand, 1923301 - 1923374
Alignment:
Q  211 atcatctccatttattagtctcttcatttctcccatctggagagataaaaacacag-aagtttgaaaataatta 283  Q
    ||||||||||||||||||||||| |||||||  |||   ||||||||| || |||| || ||||||||||||||    
T  1923301 atcatctccatttattagtctctccatttctatcattctgagagataacaatacagaaaatttgaaaataatta 1923374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 27546557 - 27546598
Alignment:
Q  146 gttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    ||||||||||||||| |  |||||||||||||||||||||||    
T  27546557 gttgtcttaaaagttgttgcaaaatggttatacaaatatcat 27546598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 265
Target Start/End: Original strand, 11775711 - 11775771
Alignment:
Q  205 gttaagatcatctccatttattagtctcttcatttctcccatctggagagataaaaacaca 265  Q
    ||||||||| |||||||||||  || ||| ||||||| | || ||||||||||||||||||    
T  11775711 gttaagatcctctccatttatgtgtttctccatttcttcaatttggagagataaaaacaca 11775771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 12827919 - 12827859
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    ||||||||||| ||||||||||||| |||||||  | |  |||||||||| ||||||||||    
T  12827919 aagaagagagagaaagaaggttgtcataaaagtcattagtaaatggttattcaaatatcat 12827859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 36548414 - 36548446
Alignment:
Q  155 aaagttttcacaaaatggttatacaaatatcat 187  Q
    |||||| ||||||||||||||||||||||||||    
T  36548414 aaagttgtcacaaaatggttatacaaatatcat 36548446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 286
Target Start/End: Original strand, 23311425 - 23311510
Alignment:
Q  203 gagttaagatcatctccatttattagtctcttcatttctcccatctggagagataaaaacac--agaagtttgaaaataattaata 286  Q
    ||||||| ||| |||| ||||||||||| || |||||||  ||| |||||||||||||||||  | ||||||||||||||| ||||    
T  23311425 gagttaaaatcctctctatttattagtcactccatttctttcatttggagagataaaaacacaaaaaagtttgaaaataatcaata 23311510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 384
Target Start/End: Original strand, 47270713 - 47270772
Alignment:
Q  325 tctatctctaaccaaatgacattattcatttattttaaacaaatggagaacatctttact 384  Q
    ||||| ||| |||||||| |||||| |||||||||||||||||| ||||  |||||||||    
T  47270713 tctatatcttaccaaatggcattatccatttattttaaacaaatagagaggatctttact 47270772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 356
Target Start/End: Complemental strand, 6882288 - 6882255
Alignment:
Q  323 tatctatctctaaccaaatgacattattcattta 356  Q
    ||||||||||| ||||||||||||||||||||||    
T  6882288 tatctatctctcaccaaatgacattattcattta 6882255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 373
Target Start/End: Complemental strand, 38200508 - 38200468
Alignment:
Q  333 taaccaaatgacattattcatttattttaaacaaatggaga 373  Q
    |||||||||||||||||  |||||||||||| |||||||||    
T  38200508 taaccaaatgacattatctatttattttaaataaatggaga 38200468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 38200653 - 38200589
Alignment:
Q  201 tcgagttaagatcatctccatttattagtctcttcatttctcccatctggagagataaaaacaca 265  Q
    |||||| |||||| ||| ||||||||||| ||||||||||| |||| || |||||| || |||||    
T  38200653 tcgagtcaagatcctcttcatttattagtttcttcatttcttccatttgaagagatgaacacaca 38200589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 9651955 - 9652012
Alignment:
Q  203 gagttaagatcatctccatttattagtctcttcatttctcccatctggagagataaaa 260  Q
    ||||||||||| ||||||||| ||||||||| ||||||| |||| |||||| ||||||    
T  9651955 gagttaagatcctctccatttgttagtctctccatttcttccatttggagaaataaaa 9652012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 8710901 - 8710969
Alignment:
Q  215 tctccatttattagtctcttcatttctcccatctggagagataaaaacacagaagtttgaaaataatta 283  Q
    |||| |||||||||||||| ||||||| |||| || | ||||||||||||||||  || ||||||||||    
T  8710901 tctcaatttattagtctctccatttcttccatttgaaaagataaaaacacagaaaattaaaaataatta 8710969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 386
Target Start/End: Original strand, 8711017 - 8711081
Alignment:
Q  323 tatctatctctaaccaaatgacattattcattta-ttttaaacaaatggagaacatctttactca 386  Q
    ||||||||||| ||||||||||||||| |||||| |||||| ||||||||||  ||||| |||||    
T  8711017 tatctatctctcaccaaatgacattatccatttatttttaagcaaatggagaggatcttgactca 8711081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 40605373 - 40605314
Alignment:
Q  128 agaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    |||||||||||||||||||||||| |||||||| | |  |||||||| | ||||||||||    
T  40605373 agaagagagaaaaagaaggttgtcataaaagttgttagcaaatggttgttcaaatatcat 40605314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 5047538 - 5047482
Alignment:
Q  203 gagttaagatcatctccatttattagtctcttcatttctcccatctggagagataaa 259  Q
    ||||||||||| ||||||||||||| | ||| ||||||| |||| | ||||||||||    
T  5047538 gagttaagatcctctccatttattactatctccatttcttccatttagagagataaa 5047482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 38627397 - 38627337
Alignment:
Q  127 aagaagagagaaaaagaaggttgtcttaaaagttttcacaaaatggttatacaaatatcat 187  Q
    |||||||| |||||| ||  |||||||||||||| ||||||||| | | ||||||||||||    
T  38627397 aagaagagggaaaaataatattgtcttaaaagttatcacaaaatagatgtacaaatatcat 38627337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University