View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11864_high_15 (Length: 385)
Name: NF11864_high_15
Description: NF11864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11864_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 7135185 - 7135022
Alignment:
| Q |
13 |
ggagtataattctcatgcaagtaaccgtcagtagcggtgcaaatcttggtaaaataattgctccttcatggaaaccaatacacgtaaatttgcaatgcca |
112 |
Q |
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| T |
7135185 |
ggagtataattctcatgcaagtaaccgtcagtagcggtgcaaatcttggtaaaataattgatccttcatggaaaccaatacacgtaaatttgcaatgcca |
7135086 |
T |
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| Q |
113 |
tgatcctcaacgtttgccaaatttaggtgtacctatgataaagtctaatagcattgatgagtgg |
176 |
Q |
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| T |
7135085 |
tgatcctcaacgtttgccaaatttaggtgtacctatgataaagtctaatagcattgatgagtgg |
7135022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 236 - 335
Target Start/End: Complemental strand, 7134980 - 7134881
Alignment:
| Q |
236 |
gttgactcaatgtatatatcctttaatgcacgtggcgcttacgattcacgacacggataaggtgagaaacgaaggtggtttattatggatcgtatacaag |
335 |
Q |
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| T |
7134980 |
gttgagtcaaggtatatatcctttaatgcacgtggcgcttaggattcacgacacggataaggtgagaaacgaagaaggtttattatggatcgtatacaag |
7134881 |
T |
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