View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11864_high_18 (Length: 319)
Name: NF11864_high_18
Description: NF11864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11864_high_18 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 142 - 319
Target Start/End: Complemental strand, 41372876 - 41372700
Alignment:
| Q |
142 |
tgcctttataacactctttaagaatttaaaattaaataaatcaaatactttaaattccaatgcattgaatatgcaatttttcatagaaatttactgttta |
241 |
Q |
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| T |
41372876 |
tgcctttataacactctttaagaatttaaaattaaataaatcaaatactttaaattccaatgcattaaatatgcaatttttcatagaaatttactattta |
41372777 |
T |
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| Q |
242 |
aagtcctttataaatgcctggagacatattaacttgcgttcagacggggcaccgcgtgtccgtctatccgctcttttt |
319 |
Q |
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| T |
41372776 |
aagtccttaataaatgcctggagacatattaactagcgttcagac-gggcaccgtgtgtccgtctatccgctcttttt |
41372700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 41375165 - 41375068
Alignment:
| Q |
20 |
aagttccaacatcaccttcacaacctgtctttcatggtattctcattgnnnnnnnngtaaagattattcacattgttttaccattattatttgacgggt |
118 |
Q |
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| T |
41375165 |
aagttccaacatccccttcacaacctgtctttcatggtattctcattg-tttttttgtcaagattattcgcattgttttaccattattatttgacgggt |
41375068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 6876927 - 6876973
Alignment:
| Q |
173 |
ttaaataaatcaaatactttaaattccaatgcattgaatatgcaatt |
219 |
Q |
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| T |
6876927 |
ttaaacaaattaaatactttaaattctaatgcattgaatatacaatt |
6876973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 46729217 - 46729278
Alignment:
| Q |
188 |
actttaaattccaatgcattgaatatgcaatttttcatagaaatttactgtttaaagtcctt |
249 |
Q |
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| T |
46729217 |
acttcaaattccgatgcattgaatgcacaattttccataaaaatttactatttaaagtcctt |
46729278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 14758617 - 14758665
Alignment:
| Q |
201 |
atgcattgaatatgcaatttttcatagaaatttactgtttaaagtcctt |
249 |
Q |
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| T |
14758617 |
atgcattgaatgcacaatttttcataaaaatttactatttaaagtcctt |
14758665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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