View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11864_high_24 (Length: 237)
Name: NF11864_high_24
Description: NF11864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11864_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 4495072 - 4494867
Alignment:
| Q |
18 |
aagacaacccttataatagtgattctggaatgttaagcctcttatccgaggctctccaaaaggttaactcccagattgagtatcagttagttcttccttc |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4495072 |
aagacaacccttataatagtgattctggaaggttaagcctcttatccgaggctctccaaaaggttaactcccagattgagtatcagttagttcttccttc |
4494973 |
T |
|
| Q |
118 |
attcacttctttgtctgatccaaaagggtttgttcttgatgaattgttgaagttgttgccgctaaaatctcgtgtttttattgtacttcaagcatcgtta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4494972 |
attcacttctttgtctgatccaaaagggtttgttcttgatgaattgttgaagttgttgccgctaaaatctcgtgtttttattgtacttcaagcatcgtta |
4494873 |
T |
|
| Q |
218 |
cctatg |
223 |
Q |
| |
|
||||| |
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|
| T |
4494872 |
gctatg |
4494867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 4500640 - 4500435
Alignment:
| Q |
18 |
aagacaacccttataatagtgattctggaatgttaagcctcttatccgaggctctccaaaaggttaactcccagattgagtatcagttagttcttccttc |
117 |
Q |
| |
|
|||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
4500640 |
aagagaacccttacaatagtgattttggaatgttaagcctcttatccgaggctctccaaaaggttaactcccagattgagtatcaattagttcttccacc |
4500541 |
T |
|
| Q |
118 |
attcacttctttgtctgatccaaaagggtttgttcttgatgaattgttgaagttgttgccgctaaaatctcgtgtttttattgtacttcaagcatcgtta |
217 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
4500540 |
attcacttctttatctgatccaaaagggtttgttcttgatgaattgttgaagttgttgaggctaaaatctcgtgtttttattgtacttcaagcatcatta |
4500441 |
T |
|
| Q |
218 |
cctatg |
223 |
Q |
| |
|
|||||| |
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|
| T |
4500440 |
cctatg |
4500435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 4507881 - 4507676
Alignment:
| Q |
18 |
aagacaacccttataatagtgattctggaatgttaagcctcttatccgaggctctccaaaaggttaactcccagattgagtatcagttagttcttccttc |
117 |
Q |
| |
|
||||||| ||||||| |||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||| |||||||||||| ||||||||||| | |
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| T |
4507881 |
aagacaatccttatagtagtgattttggaatgttaaacctcttatcggaggctctcgaaaaggttaactcgaagattgagtatcgattagttcttccacc |
4507782 |
T |
|
| Q |
118 |
attcacttctttgtctgatccaaaagggtttgttcttgatgaattgttgaagttgttgccgctaaaatctcgtgtttttattgtacttcaagcatcgtta |
217 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
4507781 |
attcacttctttatcagatccaaaagggtttgttcttgatgaactgttgaagttgttgcggctaaaatctcgtgtttttattgtacttcaagcatcatta |
4507682 |
T |
|
| Q |
218 |
cctatg |
223 |
Q |
| |
|
|||||| |
|
|
| T |
4507681 |
cctatg |
4507676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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