View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11864_high_5 (Length: 513)

Name: NF11864_high_5
Description: NF11864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11864_high_5
NF11864_high_5
[»] chr3 (2 HSPs)
chr3 (125-500)||(18009573-18009952)
chr3 (16-73)||(18009464-18009521)
[»] chr4 (3 HSPs)
chr4 (307-490)||(44890867-44891052)
chr4 (307-500)||(43242612-43242804)
chr4 (307-378)||(35076832-35076903)
[»] chr5 (1 HSPs)
chr5 (307-458)||(32234222-32234374)
[»] chr2 (5 HSPs)
chr2 (404-500)||(8972553-8972649)
chr2 (408-500)||(35780086-35780178)
chr2 (412-500)||(20440113-20440201)
chr2 (412-500)||(20445718-20445806)
chr2 (24-70)||(15235531-15235577)
[»] chr7 (1 HSPs)
chr7 (396-495)||(33131942-33132042)
[»] chr8 (2 HSPs)
chr8 (396-479)||(28977935-28978019)
chr8 (396-479)||(39889311-39889395)
[»] scaffold0302 (1 HSPs)
scaffold0302 (411-457)||(17796-17842)


Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 125 - 500
Target Start/End: Original strand, 18009573 - 18009952
Alignment:
Q  125 attcatacttcagtgttttggatctgtgaactggttttgtaatttttattatggaattggtgttaatgttatttggtaatttataatgctaacgctacca 224  Q
    |||||||||| ||||||||||||||||||| || ||||||| |||| |||||||||||||||||| | |||| ||||||||||||||||||| |||||||    
T  18009573 attcatactttagtgttttggatctgtgaattgattttgtatttttgattatggaattggtgttactattatctggtaatttataatgctaatgctacca 18009672  T
Q  225 ttttgagatttaattttatgtatcgattggtttcatttatttgtgtgatttgaatccctaaaatggggttgattnnnnnnnn----ttgtgggttgagat 320  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||            ||||||||||||||    
T  18009673 ttttgagatttaattttatgtatcggttggtttcatttatttgtgtgatttgaatcccaaaaatggggttgattaaaaaaaaaaaattgtgggttgagat 18009772  T
Q  321 ttgtttgatttggaataaagagatgaagatttgagaatatgtattgttgaatttgtttttctagttctttgggtgtttatgagttgagttgaagatgatg 420  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18009773 tggtttgatttggaataaagagatgaagatttgagaatatgtattgttgaatttgtttttctagttttttgggtgtttatgagttgagttgaagatgatg 18009872  T
Q  421 aagattcatgagtttgggtttgaatggaagaagaagaacatggaggaggatgtagaagatgaagaagcacgatggaaaag 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  18009873 aagattcatgagtttgggtttgaatggaagaagaagaacatggaggagtatgtagaagatgaagaagcacgatggtaaag 18009952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 18009464 - 18009521
Alignment:
Q  16 agagatttgaggagaggttcaagacaggaaaaaacaggtggttctttaccaagcttag 73  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  18009464 agagatttgaggagaggttcaagacaggaaaaaacaggtggttatttaccaagcttag 18009521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 307 - 490
Target Start/End: Complemental strand, 44891052 - 44890867
Alignment:
Q  307 ttgtgggttgagatttgtttgatttggaataaagagatgaagatttgagaatatgtattgttgaatttgtttttctagttctttggg-tgtttatgagtt 405  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||    
T  44891052 ttgtgggttgagatttgtttgatttagaataaagagatgaagatttgagaatatgtattgttgaatttgtttttctagttttttggggtttttatgagtt 44890953  T
Q  406 -gagttgaagatgatgaagattcatgagtttgggtttgaatggaagaagaagaacatggaggaggatgtagaagatgaagaagcac 490  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  44890952 tgagttgaagatgatgaagattcatgagtttgggtttgaatggaagaagaaaaacatggaggagtatgtagaagatgaagaagcac 44890867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 307 - 500
Target Start/End: Complemental strand, 43242804 - 43242612
Alignment:
Q  307 ttgtgggttgagatttgtttgatttggaataaagagatgaagatttgagaatatgtattgttgaatttgtttttct-agttctttgggtgtttatgag-t 404  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| | || ||||||| |||||||| |    
T  43242804 ttgtgggttgagatttgtttgatttggaataaagagatgaagatatgagaatatgtatcgttgaatttgtttttctaatttttttgggtatttatgagtt 43242705  T
Q  405 tgagttgaagatgatgaagattcatgagtttgggtttgaatggaagaagaagaacatggaggaggatgtagaagatgaagaagcacgatggaaaag 500  Q
    |||||||||||||||||||| |||||||||||||||||||||   ||||||||||||||||||| || ||||||||||||||||| ||||||||||    
T  43242704 tgagttgaagatgatgaagaatcatgagtttgggtttgaatg---gaagaagaacatggaggagtatatagaagatgaagaagcatgatggaaaag 43242612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 35076903 - 35076832
Alignment:
Q  307 ttgtgggttgagatttgtttgatttggaataaagagatgaagatttgagaatatgtattgttgaatttgttt 378  Q
    ||||||||||||||||||||  ||||||||| |||||| || ||||||||  |||| |||||||| ||||||    
T  35076903 ttgtgggttgagatttgtttattttggaatatagagatcaatatttgagagcatgtgttgttgaaattgttt 35076832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 307 - 458
Target Start/End: Complemental strand, 32234374 - 32234222
Alignment:
Q  307 ttgtgggttgagatttgtttgatttggaataaagagatgaagatttgagaatatgtattgttgaatttgtttttctagttctttgggtgtttatgag-tt 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||  || |||||||||| ||| | ||    
T  32234374 ttgtgggttgagatttgtttgatttggaataaagagatgaagatttaagaatatttattgttgaatgtgtttttctgattttttgggtgttcatgtgttt 32234275  T
Q  406 gagttgaagatgatgaagattcatgagtttgggtttgaatggaagaagaagaa 458  Q
    |||||||||||||| |||||||||||||||| |||||||| ||||||||||||    
T  32234274 gagttgaagatgataaagattcatgagtttgagtttgaattgaagaagaagaa 32234222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 404 - 500
Target Start/End: Complemental strand, 8972649 - 8972553
Alignment:
Q  404 ttgagttgaagatgatgaagattcatgagtttgggtttgaatggaagaagaagaacatggaggaggatgtagaagatgaagaagcacgatggaaaag 500  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8972649 ttgagttgaagatgatgaagattcatgagtttgggtttgaatgaaagaagaagaacatggaggagtatgtagaagatgaagaagcacgatggaaaag 8972553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 408 - 500
Target Start/End: Complemental strand, 35780178 - 35780086
Alignment:
Q  408 gttgaagatgatgaagattcatgagtttgggtttgaatggaagaagaagaacatggaggaggatgtagaagatgaagaagcacgatggaaaag 500  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  35780178 gttgaagatgatgaagaatcatgaatttgggtttgaatggaagaagaagaacatggaggagtatgtagaagatgaagaaacacgatggaaaag 35780086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 412 - 500
Target Start/End: Original strand, 20440113 - 20440201
Alignment:
Q  412 aagatgatgaagattcatgagtttgggtttgaatggaagaagaagaacatggaggaggatgtagaagatgaagaagcacgatggaaaag 500  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  20440113 aagatgatgaagaatcatgaatttgggtttgaatggaagaagaagaacatggaggagtatgtagaagatgaagaaacacgatggaaaag 20440201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 412 - 500
Target Start/End: Original strand, 20445718 - 20445806
Alignment:
Q  412 aagatgatgaagattcatgagtttgggtttgaatggaagaagaagaacatggaggaggatgtagaagatgaagaagcacgatggaaaag 500  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  20445718 aagatgatgaagaatcatgaatttgggtttgaatggaagaagaagaacatggaggagtatgtagaagatgaagaaacacgatggaaaag 20445806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 15235531 - 15235577
Alignment:
Q  24 gaggagaggttcaagacaggaaaaaacaggtggttctttaccaagct 70  Q
    ||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  15235531 gaggagaggtttaagactggaaagaataggtggttctttaccaagct 15235577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 396 - 495
Target Start/End: Complemental strand, 33132042 - 33131942
Alignment:
Q  396 tttatgagtt-gagttgaagatgatgaagattcatgagtttgggtttgaatggaagaagaagaacatggaggaggatgtagaagatgaagaagcacgatg 494  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||| ||| |||||| |||||| |||||||    
T  33132042 tttatgagtttgagttgaagatgatgaagattcatgagtttgggtttgaatggaagaagaagaatcttgaggagtatgaagaagaagaagaatcacgatg 33131943  T
Q  495 g 495  Q
    |    
T  33131942 g 33131942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 396 - 479
Target Start/End: Complemental strand, 28978019 - 28977935
Alignment:
Q  396 tttatgagtt-gagttgaagatgatgaagattcatgagtttgggtttgaatggaagaagaagaacatggaggaggatgtagaaga 479  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||| ||| ||||||    
T  28978019 tttatgagtttgagttgaagatgatgaagattcatgagtttgggtttgaatggaagaagaagaatcttgaggagtatgaagaaga 28977935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 396 - 479
Target Start/End: Original strand, 39889311 - 39889395
Alignment:
Q  396 tttatgagtt-gagttgaagatgatgaagattcatgagtttgggtttgaatggaagaagaagaacatggaggaggatgtagaaga 479  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||| ||| ||||||    
T  39889311 tttatgagtttgagttgaagatgatgaagattcatgagtttgggtttgaatggaagaagaagaatcttgaggagtatgaagaaga 39889395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 411 - 457
Target Start/End: Complemental strand, 17842 - 17796
Alignment:
Q  411 gaagatgatgaagattcatgagtttgggtttgaatggaagaagaaga 457  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  17842 gaagatgatgaatattcatgagtttgggtttgaatggaagaagaaga 17796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University