View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11864_high_6 (Length: 498)
Name: NF11864_high_6
Description: NF11864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11864_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 16 - 483
Target Start/End: Complemental strand, 41716759 - 41716292
Alignment:
| Q |
16 |
agaggaaaaagtttgccacgaacgcatcatctagcgactttgacaaattccacttcacatcattggttcatcaaaagcgttattctgagtttctggccaa |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41716759 |
agaggaaaaagtttgccacgaacgcatcatctagtgactttgacaaattccacttcacatcattggttcatcaaaagcgttattctgagtttctggccaa |
41716660 |
T |
|
| Q |
116 |
caaaaagtttgtgggagaaaacaatttccagttggaagggagcaaattctcgtgtattcataaaatgatagaatccagaggatgggtggaattgacatcg |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41716659 |
caaaaagtttgtgggagaaaacaatttccagttggaagggagcaaattctcgtgtattcataaaatgatagaatccagaggatgggtggaattgacatcg |
41716560 |
T |
|
| Q |
216 |
tttgcaaaagatgctagtacgacaatagctaaagagttctttgcaaatgcatatcagggtcctgctaagaatgatcgaatgaaattcactagttttgtca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41716559 |
tttgcaaaagatgctagtacgacaatagctaaagagttctttgcaaatgcatatcagggtcctgctaagaatgatcgaatgaaattcactagttttgtca |
41716460 |
T |
|
| Q |
316 |
gagggaagaaggttccatttcatgataaaattatcaatcaaatgtttaggcttgagaactatgagaagtgttcatttgaagcaagaaaggccaagggttc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41716459 |
gagggaagaaggttccatttcatgataaaattatcaatcaaatgtttaggcttgagaactatgagaagtgttcatttgaagcaagaaaggccaagggttc |
41716360 |
T |
|
| Q |
416 |
taacattgatcatcaggagattcgtagtactttgtgtaggcccgaggctgattgggttaggaacaaag |
483 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41716359 |
taacgttgatcatcaggagattcgtagtactttgtgtaggcccgaggctgattgggttaggaacaaag |
41716292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 11 - 483
Target Start/End: Complemental strand, 41706961 - 41706489
Alignment:
| Q |
11 |
agcagagaggaaaaagtttgccacgaacgcatcatctagcgactttgacaaattccacttcacatcattggttcatcaaaagcgttattctgagtttctg |
110 |
Q |
| |
|
|||| |||| |||||| ||||||| ||| |||||| |||| |||||||||| |||||||||||||||| |||||||||| |||| ||||||||||||||| |
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|
| T |
41706961 |
agcaaagagaaaaaaggttgccaccaacccatcatttagcaactttgacaacttccacttcacatcatcggttcatcaagagcgctattctgagtttctg |
41706862 |
T |
|
| Q |
111 |
gccaacaaaaagtttgtgggagaaaacaatttccagttggaagggagcaaattctcgtgtattcataaaatgatagaatccagaggatgggtggaattga |
210 |
Q |
| |
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||||||||||||||||||| |||||| ||||||| ||||||||||| |||||||| ||| || |||||||| |||||||||||||||||||||| |
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| T |
41706861 |
gccaacaaaaagtttgtggaagaaaaaaatttccggttggaagggaacaaattcttagatatccaagtaatgatagtgtccagaggatgggtggaattga |
41706762 |
T |
|
| Q |
211 |
catcgtttgcaaaagatgctagtacgacaatagctaaagagttctttgcaaatgcatatcagggtcctgctaagaatgatcgaatgaaattcactagttt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
41706761 |
catcgtttgcaaaagatgctagtacgacattagctaaagagttctttgcaaatgcatatcagggccctgctaagaatgagcgaatgaaattcactagttt |
41706662 |
T |
|
| Q |
311 |
tgtcagagggaagaaggttccatttcatgataaaattatcaatcaaatgtttaggcttgagaactatgagaagtgttcatttgaagcaagaaaggccaag |
410 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||| ||||||||| || ||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
41706661 |
tatcagagggaagaatgttccatttcatgataatattatcaatgaattgtttgggcttgagaactatgagcagtgttcctttgaagcaagaaaggccaag |
41706562 |
T |
|
| Q |
411 |
ggttctaacattgatcatcaggagattcgtagtactttgtgtaggcccgaggctgattgggttaggaacaaag |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
41706561 |
ggttctaacattgatcatcaggagattcgtagtactctgtgtaggcccgaggccgattgggttaggaacaaag |
41706489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 10 - 477
Target Start/End: Complemental strand, 41665749 - 41665264
Alignment:
| Q |
10 |
aagcagagaggaaaaagtttgccacgaacgcatcatctagcgactttgacaaattccacttcacatcattggttcatcaaaagcgttattctgagtttct |
109 |
Q |
| |
|
||||| |||| |||||| ||||||| ||||| || |||||| ||||||||| || || |||| |||| |||| |||||| |||| ||||| ||||||| |
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|
| T |
41665749 |
aagcaaagagaaaaaaggttgccaccaacgcctcgtctagctcctttgacaactttcatttcatatcaatggtccatcaagagcgctattcgaagtttct |
41665650 |
T |
|
| Q |
110 |
ggccaacaaaaagtttgtgggagaaaacaatttccagttggaagggagcaaattctcgtgtattcataaaatgatagaatccagaggatgggtggaattg |
209 |
Q |
| |
|
||||||||||||||||| |||||| |||||| |||||||||| ||||||||| |||||| |||||||| |||||||||||| ||||| |
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|
| T |
41665649 |
aaccaacaaaaagtttgtgttagaaaaaaatttctggttggaaggggacaaattctcagatattcaggcaatgatagtggccagaggatggggcaaattg |
41665550 |
T |
|
| Q |
210 |
acatcgtttgcaaaagatgctagtacgacaatagctaaagagttctttgcaaatgcatatcagggtcctgctaa------------------gaatgatc |
291 |
Q |
| |
|
||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| |||| |||| || |||||||| |
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| T |
41665549 |
acatcatttgcaaaagaggctagtgcgacattagctaaagagttctttgcaaatgcatatatgggtactgccaaagaagatgggaactatgagaatgatc |
41665450 |
T |
|
| Q |
292 |
gaatgaaattcactagttttgtcagagggaagaaggttccatttcatgataaaattatcaatcaaatgtttaggcttgagaactatgagaagtgttcatt |
391 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||| || |
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| T |
41665449 |
tgatgaaattcactagttttgtgagagggaagaaggtgccatttcatgagaaaattatcaatcaattgtttgggcttgagaactatgagcagtgttcgtt |
41665350 |
T |
|
| Q |
392 |
tgaagcaagaaaggccaagggttctaacattgatcatcaggagattcgtagtactttgtgtaggcccgaggctgattgggttagga |
477 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||| |
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| T |
41665349 |
tgaagcaagaaagaccaagggctctaacattgatcatcaggagattcgtagcactctgtgcaggcccgaggctgattgggttagga |
41665264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 54 - 483
Target Start/End: Complemental strand, 41656943 - 41656497
Alignment:
| Q |
54 |
tttgacaaattccacttcacatcattggttcatcaaaagcgttattctgagtttctggccaacaaaaagtttgtgggagaaaacaatttccagttggaag |
153 |
Q |
| |
|
|||||||| || ||||||| ||||||||| |||||| ||| ||||| ||||||||||||||||||||||||| |||||| || ||||||||||||| |
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|
| T |
41656943 |
tttgacaattttcacttcatatcattggtccatcaagagcactattcgaagtttctggccaacaaaaagtttgtattagaaaaaaaattccagttggaag |
41656844 |
T |
|
| Q |
154 |
ggagcaaattctcgtgtattcataaaatgatagaatccagaggatgggtggaattgacatcgtttgcaaaagatgctagtacgacaatagctaaagagtt |
253 |
Q |
| |
|
|| ||||||||| |||||| ||||||||| |||||||||||| ||| ||||| | ||||||||||| |||||| | || ||||||||||||| |
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|
| T |
41656843 |
ggtacaaattctcagatattcaggaaatgatagtgaccagaggatggggggatctgacaacatttgcaaaagaggctagtgcc-cattagctaaagagtt |
41656745 |
T |
|
| Q |
254 |
ctttgcaaatgcatatcagggtcctgctaa------------------gaatgatcgaatgaaattcactagttttgtcagagggaagaaggttccattt |
335 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||| |||| ||| |||||| |
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| T |
41656744 |
ctttgcaaatgcatatctgggtcctgctaaagaagatgggaactataagaatgatttgatgaaattcactagttttgtcagaggcaagatggtgccattt |
41656645 |
T |
|
| Q |
336 |
catgataaaattatcaatcaaatgtttaggcttgagaactatgagaagtgttcatttgaagcaagaaaggccaagggttctaacattgatcatcaggaga |
435 |
Q |
| |
|
||||| ||||||||||||| | ||||| |||| |||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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|
| T |
41656644 |
catgagaaaattatcaatcgattgtttgggctagagaactatgagcagtgttcatttgaagcaagaaaggcaaagggatctaacattgatcatcaggaga |
41656545 |
T |
|
| Q |
436 |
ttcgtagtactttgtgtaggcccgaggctgattgggttaggaacaaag |
483 |
Q |
| |
|
||| ||||||| |||| ||||||||||| |||||| ||||||| |||| |
|
|
| T |
41656544 |
ttcttagtactctgtgcaggcccgaggccgattggattaggaagaaag |
41656497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 281 - 481
Target Start/End: Complemental strand, 41648608 - 41648408
Alignment:
| Q |
281 |
taagaatgatcgaatgaaattcactagttttgtcagagggaagaaggttccatttcatgataaaattatcaatcaaatgtttaggcttgagaactatgag |
380 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |
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|
| T |
41648608 |
taagaatgatctaatgcaattcactagttttgtgagagggaagaaggttccatttcatgataaaattatcaatcaattgtttgggcttgagaacaatgag |
41648509 |
T |
|
| Q |
381 |
aagtgttcatttgaagcaagaaaggccaagggttctaacattgatcatcaggagattcgtagtactttgtgtaggcccgaggctgattgggttaggaaca |
480 |
Q |
| |
|
||||||| |||||| |||||||| ||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
41648508 |
gagtgttcctttgaaacaagaaagaccaagggctctaacattgatcatcaggagattcacagtactctgtgtaggcccgaggccgattgggttaggaaca |
41648409 |
T |
|
| Q |
481 |
a |
481 |
Q |
| |
|
| |
|
|
| T |
41648408 |
a |
41648408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 190 - 278
Target Start/End: Complemental strand, 41648717 - 41648629
Alignment:
| Q |
190 |
ccagaggatgggtggaattgacatcgtttgcaaaagatgctagtacgacaatagctaaagagttctttgcaaatgcatatcagggtcct |
278 |
Q |
| |
|
|||||||||| ||||||||||||| | ||||| |||| ||| |||| ||| | |||||||| || | |||||||||||||||||||||| |
|
|
| T |
41648717 |
ccagaggatgagtggaattgacatagcttgcagaagaggcttgtacaacatttgctaaagaattgtctgcaaatgcatatcagggtcct |
41648629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 68 - 477
Target Start/End: Original strand, 2440176 - 2440599
Alignment:
| Q |
68 |
cttcacatcattggttcatcaaaagcgttattctgagtttctggccaacaaaaagtttgtgggagaaaacaatttccagttggaagggagcaaattctcg |
167 |
Q |
| |
|
||||| ||||||||| |||||| |||| ||||| ||||||||||| ||||||| |||| | ||| || ||||||| |||||||||| |||||| || |
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|
| T |
2440176 |
cttcatatcattggtccatcaagagcgctattcgaagtttctggcctacaaaaaatttgagttagagaaaaatttccggttggaaggggacaaattatca |
2440275 |
T |
|
| Q |
168 |
tgtattcataaaatgatagaatccagaggatgggtggaattgacatcgtttgcaaaagatgctagtacgacaatagctaaagagttctttgcaaatgcat |
267 |
Q |
| |
|
|||||| | ||||| ||||||| |||| ||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2440276 |
gatattcaagcagtgataacgaccagagggtggggagaattgacatcatttgcaaaagaggctagtacgacattagctaaagagttctttgcaaatgcat |
2440375 |
T |
|
| Q |
268 |
atcagggtcctgctaa------------------gaatgatcgaatgaaattcactagttttgtcagagggaagaaggttccatttcatgataaaattat |
349 |
Q |
| |
|
|| |||| |||||| ||||||| |||||||||||||||||||| |||||||||||||| |||||||| | ||||||| |
|
|
| T |
2440376 |
atattggtcttgctaaagaagatgggaactataagaatgatttgatgaaattcactagttttgttagagggaagaaggtgccatttcaggg--aaattat |
2440473 |
T |
|
| Q |
350 |
caatcaaatgtttaggcttgagaactatgagaagtgttcatttgaagcaagaaaggccaagggttctaacattgatcatcaggagattcgtagtactttg |
449 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||| | |||||| ||||||||||||||||||||||||| ||||||| || |
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|
| T |
2440474 |
caatcaattgtttaggcttgagaactatgagcagtgttcatttgaagcaagaaatggcaagggatctaacattgatcatcaggagattcttagtactctg |
2440573 |
T |
|
| Q |
450 |
tgtaggcccgaggctgattgggttagga |
477 |
Q |
| |
|
|| ||| ||||| ||||||||||||| |
|
|
| T |
2440574 |
tg--cgcctgaggccgattgggttagga |
2440599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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